Wall clock time and date at job start Mon Mar 30 2020 07:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.50700 * 109.47505 * 120.00342 * 2 1 3 5 5 N 1.31792 * 119.03860 * 120.00186 * 4 2 1 6 6 C 1.32270 * 120.88888 * 180.02562 * 5 4 2 7 7 C 1.39234 * 119.01651 * 359.97438 * 6 5 4 8 8 N 1.39980 * 120.87021 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99679 * 34.90794 * 8 7 6 10 10 O 1.21284 * 120.00335 * 355.32106 * 9 8 7 11 11 C 1.50702 * 119.99838 * 175.31910 * 9 8 7 12 12 H 1.08998 * 109.47294 * 59.99986 * 11 9 8 13 13 C 1.53007 * 109.47140 * 300.00135 * 11 9 8 14 14 C 1.50699 * 109.47056 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00362 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99812 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99929 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 120.00117 * 0.02562 * 16 14 11 19 19 H 1.48492 * 109.47131 * 270.00035 * 18 16 14 20 20 H 1.48505 * 109.47303 * 29.99829 * 18 16 14 21 21 H 1.48497 * 109.47176 * 149.99555 * 18 16 14 22 22 C 1.39233 * 118.26000 * 0.27730 * 7 6 5 23 23 N 1.31798 * 119.03436 * 300.02121 * 4 2 1 24 24 H 1.09008 * 109.46804 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47157 * 299.99469 * 1 2 3 26 26 H 1.08994 * 109.47464 * 60.00101 * 1 2 3 27 27 H 1.09004 * 109.47419 * 240.00631 * 2 1 3 28 28 H 1.08997 * 109.47275 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46845 * 300.00360 * 3 2 1 30 30 H 1.09004 * 109.46475 * 60.00053 * 3 2 1 31 31 H 1.07995 * 120.49016 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00025 * 214.90691 * 8 7 6 33 33 H 1.09000 * 109.47041 * 59.99827 * 13 11 9 34 34 H 1.08994 * 109.47068 * 179.97438 * 13 11 9 35 35 H 1.08998 * 109.46906 * 300.00089 * 13 11 9 36 36 H 0.96999 * 119.99839 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.49048 * 179.70392 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.7889 -1.7801 1.0874 6 6 3.2494 -2.4322 2.1420 7 6 2.9241 -1.9722 3.4153 8 7 3.3908 -2.6321 4.5583 9 6 4.6120 -3.2022 4.5558 10 8 5.2720 -3.2177 3.5383 11 6 5.1577 -3.8202 5.8173 12 1 4.4944 -4.6201 6.1463 13 6 5.2502 -2.7527 6.9095 14 6 6.5294 -4.3832 5.5482 15 1 6.9630 -4.3012 4.5625 16 6 7.2314 -5.0019 6.5609 17 7 8.4284 -5.4937 6.3260 18 14 6.4818 -5.1431 8.2660 19 1 6.8558 -3.9527 9.0712 20 1 5.0031 -5.2189 8.1521 21 1 6.9906 -6.3698 8.9304 22 6 2.1182 -0.8419 3.5221 23 7 1.7021 -0.2441 2.4180 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.8684 -3.3082 2.0174 32 1 2.8352 -2.6791 5.3520 33 1 4.2582 -2.3451 7.1042 34 1 5.6444 -3.1998 7.8220 35 1 5.9135 -1.9528 6.5805 36 1 8.9224 -5.9287 7.0385 37 1 1.8398 -0.4570 4.4920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597599737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:02 Heat of formation + Delta-G solvation = 6.063399 kcal Electronic energy + Delta-G solvation = -19411.103115 eV Core-core repulsion = 16381.578072 eV Total energy + Delta-G solvation = -3029.525043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25953 -39.32592 -35.93485 -34.36554 -34.05430 -33.56999 -31.47759 -29.43051 -27.27936 -25.28798 -25.00671 -24.42937 -22.73909 -20.90416 -19.89437 -17.82869 -17.38445 -16.93988 -16.42606 -15.74209 -15.07481 -14.78056 -14.49214 -14.36300 -14.04905 -13.48334 -13.42717 -13.09011 -12.84675 -12.44218 -12.27724 -12.09725 -11.79773 -11.40164 -11.20794 -11.11084 -11.02272 -10.80729 -10.73883 -10.56904 -10.42868 -9.76156 -9.30104 -9.25242 -8.92275 -8.69295 -8.23978 -6.15971 -4.18277 0.93187 1.15671 3.12028 3.16687 3.21171 3.26108 3.29371 3.83094 3.94225 4.21515 4.27267 4.59296 4.87618 4.94838 5.03280 5.08364 5.12560 5.37871 5.51219 5.59364 5.65406 5.72614 5.82021 5.91060 5.95850 6.09949 6.10378 6.17020 6.26417 6.27646 6.53991 6.69201 6.98091 7.08582 7.33215 7.67941 8.17627 8.38614 8.65164 9.01738 9.41004 10.96631 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.048869 B = 0.004046 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.819861 B = 6919.371648 C = 7197.890195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 C -0.140 4.140 4 C 0.287 3.713 5 N -0.498 5.498 6 C 0.145 3.855 7 C 0.056 3.944 8 N -0.678 5.678 9 C 0.528 3.472 10 O -0.507 6.507 11 C 0.001 3.999 12 H 0.058 0.942 13 C -0.147 4.147 14 C -0.513 4.513 15 H 0.095 0.905 16 C 0.073 3.927 17 N -0.891 5.891 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.267 1.267 21 H -0.294 1.294 22 C 0.114 3.886 23 N -0.495 5.495 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.183 0.817 32 H 0.411 0.589 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.266 0.734 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.466 10.251 -5.126 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.198 4.198 4 C 0.019 3.981 5 N -0.211 5.211 6 C -0.024 4.024 7 C -0.044 4.044 8 N -0.326 5.326 9 C 0.318 3.682 10 O -0.378 6.378 11 C -0.021 4.021 12 H 0.076 0.924 13 C -0.205 4.205 14 C -0.551 4.551 15 H 0.113 0.887 16 C -0.130 4.130 17 N -0.528 5.528 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.221 1.221 22 C -0.055 4.055 23 N -0.209 5.209 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.200 0.800 32 H 0.247 0.753 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.050 10.553 -6.547 20.294 hybrid contribution -0.105 -0.632 2.391 2.475 sum -16.155 9.920 -4.156 19.408 Atomic orbital electron populations 1.21782 0.93414 1.01980 1.02539 1.19871 0.96234 0.95651 0.92523 1.21789 1.01115 0.94426 1.02513 1.23002 0.91756 0.90454 0.92871 1.68304 1.10180 1.08395 1.34244 1.23648 0.94488 0.98218 0.86029 1.19730 0.99519 0.95055 0.90138 1.43944 1.18949 1.55899 1.13762 1.21751 0.78257 0.75751 0.92414 1.90596 1.57697 1.54968 1.34563 1.19337 0.99655 0.94722 0.88395 0.92410 1.22155 0.99477 0.99673 0.99170 1.20885 0.97566 1.36576 1.00069 0.88734 1.24973 0.94676 0.94815 0.98494 1.69873 1.11666 1.37999 1.33306 0.86916 0.79769 0.76868 0.85014 1.20404 1.19206 1.22134 1.23047 0.94892 0.89531 0.98053 1.68037 1.22978 1.31402 0.98440 0.92877 0.91573 0.91883 0.88828 0.92764 0.91869 0.91567 0.80003 0.75271 0.94677 0.92891 0.92178 0.92363 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.09 37.16 0.34 -0.94 16 2 C -0.02 -0.25 3.25 -91.77 -0.30 -0.55 16 3 C -0.14 -1.37 9.09 37.16 0.34 -1.04 16 4 C 0.29 4.11 6.34 -157.19 -1.00 3.12 16 5 N -0.50 -8.12 10.29 -10.58 -0.11 -8.22 16 6 C 0.14 2.45 9.98 -16.99 -0.17 2.28 16 7 C 0.06 0.85 6.34 -83.40 -0.53 0.32 16 8 N -0.68 -10.12 5.22 -9.68 -0.05 -10.17 16 9 C 0.53 10.56 7.01 -10.99 -0.08 10.48 16 10 O -0.51 -12.00 12.96 5.55 0.07 -11.92 16 11 C 0.00 0.01 2.23 -92.92 -0.21 -0.20 16 12 H 0.06 1.18 7.20 -51.93 -0.37 0.81 16 13 C -0.15 -2.78 8.57 37.16 0.32 -2.46 16 14 C -0.51 -14.09 8.95 -34.44 -0.31 -14.40 16 15 H 0.09 2.97 7.00 -52.49 -0.37 2.61 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.88 20.30 24.37 -169.99 -4.14 16.16 16 19 H -0.28 -6.17 6.87 56.52 0.39 -5.78 16 20 H -0.27 -5.60 6.53 56.52 0.37 -5.23 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.11 1.48 11.26 -17.00 -0.19 1.28 16 23 N -0.50 -6.83 9.79 -10.58 -0.10 -6.93 16 24 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 31 H 0.18 3.34 6.33 -52.49 -0.33 3.01 16 32 H 0.41 4.63 8.39 -40.82 -0.34 4.29 16 33 H 0.03 0.50 7.68 -51.93 -0.40 0.10 16 34 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -32.22 305.72 -5.79 -38.01 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.95 Total: 4.60 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.88 Total: -0.17 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.51 Total: -51.27 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.14 Total: 16.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.22 -5.79 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597599737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.070 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds