Wall clock time and date at job start Mon Mar 30 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35966 * 116.99759 * 2 1 4 4 C 1.38731 * 119.98742 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.01643 * 180.02562 * 4 3 2 6 6 C 1.38847 * 119.98787 * 359.97438 * 5 4 3 7 7 N 1.40101 * 120.01532 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00132 * 351.95459 * 7 6 5 9 9 C 1.34776 * 119.99919 * 171.95539 * 7 6 5 10 10 O 1.21288 * 119.99975 * 353.40613 * 9 7 6 11 11 C 1.50708 * 120.00014 * 173.68646 * 9 7 6 12 12 H 1.09002 * 109.46950 * 316.92933 * 11 9 7 13 13 C 1.53001 * 109.47031 * 76.92578 * 11 9 7 14 14 C 1.50696 * 109.47167 * 196.92389 * 11 9 7 15 15 H 1.08003 * 120.00103 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00120 * 179.97438 * 14 11 9 17 17 N 1.31522 * 119.99962 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00297 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47296 * 89.99779 * 18 16 14 20 20 H 1.48493 * 109.47284 * 210.00183 * 18 16 14 21 21 H 1.48504 * 109.46854 * 329.99899 * 18 16 14 22 22 C 1.38847 * 119.96792 * 0.25599 * 6 5 4 23 23 C 1.38087 * 119.98576 * 359.53450 * 22 6 5 24 24 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47145 * 299.99331 * 1 2 3 26 26 H 1.09001 * 109.47452 * 59.99467 * 1 2 3 27 27 H 1.08004 * 119.98468 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.00123 * 179.97438 * 5 4 3 29 29 H 1.08993 * 109.47170 * 273.46753 * 8 7 6 30 30 H 1.09001 * 109.46950 * 33.47080 * 8 7 6 31 31 H 1.09006 * 109.47244 * 153.46472 * 8 7 6 32 32 H 1.08997 * 109.47172 * 306.40042 * 13 11 9 33 33 H 1.08997 * 109.47416 * 66.39927 * 13 11 9 34 34 H 1.08999 * 109.46951 * 186.39938 * 13 11 9 35 35 H 0.97000 * 119.99976 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.00726 * 179.74045 * 22 6 5 37 37 H 1.08004 * 119.99375 * 180.19139 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5139 0.0011 6 6 3.3031 3.6786 0.0005 7 7 3.9392 4.9269 0.0016 8 6 5.3908 5.0092 0.1809 9 6 3.2155 6.0520 -0.1622 10 8 2.0346 5.9800 -0.4296 11 6 3.8750 7.3996 -0.0195 12 1 4.5370 7.3903 0.8464 13 6 4.6876 7.7057 -1.2793 14 6 2.8190 8.4585 0.1667 15 1 1.7748 8.1831 0.1807 16 6 3.1860 9.7785 0.3201 17 7 4.4576 10.1138 0.3035 18 14 1.8771 11.0910 0.5516 19 1 1.5956 11.2594 1.9999 20 1 2.3607 12.3772 -0.0114 21 1 0.6343 10.6798 -0.1496 22 6 1.9166 3.6055 0.0048 23 6 1.2904 2.3748 -0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 4.0194 0.3778 0.0005 28 1 5.1376 2.5700 0.0019 29 1 5.6247 5.0326 1.2452 30 1 5.8632 4.1396 -0.2760 31 1 5.7646 5.9168 -0.2933 32 1 5.3745 6.8829 -1.4774 33 1 4.0126 7.8274 -2.1264 34 1 5.2545 8.6248 -1.1315 35 1 4.7158 11.0425 0.4118 36 1 1.3280 4.5110 0.0087 37 1 0.2118 2.3178 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597809028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:36 Heat of formation + Delta-G solvation = -26.682079 kcal Electronic energy + Delta-G solvation = -19733.826246 eV Core-core repulsion = 16670.588501 eV Total energy + Delta-G solvation = -3063.237744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43657 -39.27141 -37.00584 -34.85743 -33.87201 -31.03236 -30.67278 -28.91062 -27.42224 -26.28682 -25.25125 -23.24614 -22.42679 -21.06910 -18.96568 -18.02715 -16.94243 -16.49097 -15.95446 -15.66435 -15.23877 -14.95332 -14.55742 -14.49839 -13.56593 -13.40680 -13.11239 -13.01473 -12.57401 -12.47673 -12.39580 -12.01553 -11.70854 -11.32395 -11.20751 -11.06095 -10.82831 -10.70195 -10.50107 -10.34666 -10.04001 -9.36144 -9.06330 -8.79768 -8.55490 -8.29855 -7.17774 -6.10890 -4.14196 1.53623 1.69249 3.29516 3.32437 3.35991 3.40727 3.41925 3.49258 4.12349 4.40886 4.92933 5.03127 5.12016 5.13667 5.23282 5.32636 5.39890 5.44796 5.55151 5.72181 5.76247 5.87839 5.97187 6.14395 6.30701 6.52628 6.63376 6.69040 6.71941 6.82020 6.86074 7.27792 7.36785 7.61980 7.65364 7.83840 7.96024 8.22454 8.90936 8.97775 9.51191 10.97224 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.004667 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.314022 B = 5998.708799 C = 6712.405407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.083 3.917 4 C -0.128 4.128 5 C -0.135 4.135 6 C 0.135 3.865 7 N -0.567 5.567 8 C 0.063 3.937 9 C 0.521 3.479 10 O -0.519 6.519 11 C 0.033 3.967 12 H 0.053 0.947 13 C -0.135 4.135 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.128 4.128 23 C -0.181 4.181 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.262 0.738 36 H 0.180 0.820 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 -15.240 -0.208 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.038 3.962 4 C -0.147 4.147 5 C -0.156 4.156 6 C 0.040 3.960 7 N -0.290 5.290 8 C -0.079 4.079 9 C 0.315 3.685 10 O -0.395 6.395 11 C 0.012 3.988 12 H 0.071 0.929 13 C -0.193 4.193 14 C -0.543 4.543 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.147 4.147 23 C -0.200 4.200 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.196 0.804 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.459 -15.183 -0.343 15.193 hybrid contribution -0.717 0.736 0.173 1.042 sum -1.176 -14.446 -0.170 14.495 Atomic orbital electron populations 1.22968 0.78999 1.03291 1.01329 1.86007 1.20880 1.27305 1.89652 1.18970 0.92340 0.83981 1.00955 1.20055 0.91193 0.97625 1.05839 1.20631 0.99590 0.90402 1.04957 1.18098 0.92225 0.85290 1.00410 1.45904 1.08666 1.04525 1.69929 1.22180 0.79167 1.04295 1.02284 1.22356 0.86860 0.86235 0.73048 1.90242 1.16929 1.86225 1.46127 1.18921 0.96585 0.86459 0.96794 0.92921 1.21869 0.98762 1.01517 0.97104 1.21069 0.93220 0.90647 1.49365 0.90924 1.24927 0.95615 0.98543 0.94917 1.69872 1.15074 1.18088 1.50342 0.86433 0.81813 0.80539 0.78357 1.20620 1.21194 1.19685 1.22404 0.93816 1.00047 0.98467 1.21241 0.99787 0.91941 1.07037 0.88729 0.92868 0.92864 0.85472 0.85149 0.92132 0.91273 0.88277 0.96289 0.94334 0.88822 0.92831 0.80392 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.34 10.50 -19.63 -0.21 -4.55 16 3 C 0.08 1.23 6.69 -39.22 -0.26 0.97 16 4 C -0.13 -1.80 9.98 -39.46 -0.39 -2.20 16 5 C -0.13 -1.98 9.26 -39.41 -0.37 -2.34 16 6 C 0.14 2.41 6.48 -83.63 -0.54 1.87 16 7 N -0.57 -10.60 3.10 -120.78 -0.37 -10.97 16 8 C 0.06 0.92 9.43 59.85 0.56 1.48 16 9 C 0.52 11.83 6.77 -10.98 -0.07 11.76 16 10 O -0.52 -12.96 12.17 5.55 0.07 -12.89 16 11 C 0.03 0.81 1.81 -92.92 -0.17 0.64 16 12 H 0.05 1.29 7.60 -51.93 -0.39 0.90 16 13 C -0.13 -3.02 8.49 37.16 0.32 -2.71 16 14 C -0.50 -13.91 8.35 -34.44 -0.29 -14.20 16 15 H 0.07 2.10 6.89 -52.48 -0.36 1.74 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.41 11.39 55.43 0.63 -23.78 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.13 -2.36 8.96 -39.41 -0.35 -2.71 16 23 C -0.18 -2.83 9.03 -39.46 -0.36 -3.19 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.13 1.56 6.07 -52.49 -0.32 1.24 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.80 6.11 -51.93 -0.32 0.48 16 31 H 0.10 1.50 4.30 -51.93 -0.22 1.28 16 32 H 0.02 0.35 5.70 -51.93 -0.30 0.05 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 2.26 6.27 -51.93 -0.33 1.94 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.18 3.74 4.77 -54.90 -0.26 3.48 16 37 H 0.13 1.68 6.29 -52.48 -0.33 1.35 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -30.54 298.50 -5.88 -36.42 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.45 Total: 2.76 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.03 Total: -7.80 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.26 Total: -34.75 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.14 Total: -17.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.54 -5.88 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597809028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.734 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds