Wall clock time and date at job start Mon Mar 30 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35966 * 116.99759 * 2 1 4 4 C 1.38731 * 119.98742 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.01643 * 180.02562 * 4 3 2 6 6 C 1.38847 * 119.98787 * 359.97438 * 5 4 3 7 7 N 1.40101 * 120.01532 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00132 * 351.95459 * 7 6 5 9 9 C 1.34776 * 119.99919 * 171.95539 * 7 6 5 10 10 O 1.21288 * 119.99975 * 353.40613 * 9 7 6 11 11 C 1.50708 * 120.00014 * 173.68646 * 9 7 6 12 12 H 1.09002 * 109.46950 * 316.92933 * 11 9 7 13 13 C 1.53001 * 109.47031 * 76.92578 * 11 9 7 14 14 C 1.50696 * 109.47167 * 196.92389 * 11 9 7 15 15 H 1.08003 * 120.00103 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00120 * 179.97438 * 14 11 9 17 17 N 1.31522 * 119.99962 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00297 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47296 * 89.99779 * 18 16 14 20 20 H 1.48493 * 109.47284 * 210.00183 * 18 16 14 21 21 H 1.48504 * 109.46854 * 329.99899 * 18 16 14 22 22 C 1.38847 * 119.96792 * 0.25599 * 6 5 4 23 23 C 1.38087 * 119.98576 * 359.53450 * 22 6 5 24 24 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47145 * 299.99331 * 1 2 3 26 26 H 1.09001 * 109.47452 * 59.99467 * 1 2 3 27 27 H 1.08004 * 119.98468 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.00123 * 179.97438 * 5 4 3 29 29 H 1.08993 * 109.47170 * 273.46753 * 8 7 6 30 30 H 1.09001 * 109.46950 * 33.47080 * 8 7 6 31 31 H 1.09006 * 109.47244 * 153.46472 * 8 7 6 32 32 H 1.08997 * 109.47172 * 306.40042 * 13 11 9 33 33 H 1.08997 * 109.47416 * 66.39927 * 13 11 9 34 34 H 1.08999 * 109.46951 * 186.39938 * 13 11 9 35 35 H 0.97000 * 119.99976 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.00726 * 179.74045 * 22 6 5 37 37 H 1.08004 * 119.99375 * 180.19139 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5139 0.0011 6 6 3.3031 3.6786 0.0005 7 7 3.9392 4.9269 0.0016 8 6 5.3908 5.0092 0.1809 9 6 3.2155 6.0520 -0.1622 10 8 2.0346 5.9800 -0.4296 11 6 3.8750 7.3996 -0.0195 12 1 4.5370 7.3903 0.8464 13 6 4.6876 7.7057 -1.2793 14 6 2.8190 8.4585 0.1667 15 1 1.7748 8.1831 0.1807 16 6 3.1860 9.7785 0.3201 17 7 4.4576 10.1138 0.3035 18 14 1.8771 11.0910 0.5516 19 1 1.5956 11.2594 1.9999 20 1 2.3607 12.3772 -0.0114 21 1 0.6343 10.6798 -0.1496 22 6 1.9166 3.6055 0.0048 23 6 1.2904 2.3748 -0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 4.0194 0.3778 0.0005 28 1 5.1376 2.5700 0.0019 29 1 5.6247 5.0326 1.2452 30 1 5.8632 4.1396 -0.2760 31 1 5.7646 5.9168 -0.2933 32 1 5.3745 6.8829 -1.4774 33 1 4.0126 7.8274 -2.1264 34 1 5.2545 8.6248 -1.1315 35 1 4.7158 11.0425 0.4118 36 1 1.3280 4.5110 0.0087 37 1 0.2118 2.3178 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597809028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:36 Heat of formation + Delta-G solvation = -45.383215 kcal Electronic energy + Delta-G solvation = -19734.637188 eV Core-core repulsion = 16670.588501 eV Total energy + Delta-G solvation = -3064.048687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83464 -40.52534 -38.31810 -36.36302 -35.73733 -32.73649 -32.04270 -30.16105 -28.46869 -27.53294 -27.22270 -24.80562 -23.75477 -22.43010 -20.53106 -19.13370 -18.61315 -17.86792 -17.79360 -16.77282 -16.65353 -16.37477 -16.17968 -15.72562 -15.10782 -14.77975 -14.67060 -14.26343 -14.18880 -13.65767 -13.63664 -13.40438 -13.02891 -12.96790 -12.71595 -12.66339 -12.31856 -12.28752 -12.17757 -12.02812 -11.82310 -11.09279 -10.66280 -10.54276 -10.07077 -9.93942 -8.46776 -8.18057 -6.27912 0.33305 0.42319 1.39885 1.41177 1.52321 1.78138 1.99308 2.42412 2.45331 2.86440 3.12616 3.73036 3.93713 4.09585 4.17423 4.32355 4.39229 4.40036 4.48097 4.54999 4.65950 4.68939 4.72382 4.77072 4.92601 4.98756 5.09068 5.14392 5.28999 5.46349 5.47198 5.56163 5.71199 5.88495 6.01665 6.13945 6.44644 6.51224 6.77911 7.28725 7.41072 8.88411 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.004667 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.314022 B = 5998.708799 C = 6712.405407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.087 3.913 4 C -0.126 4.126 5 C -0.118 4.118 6 C 0.104 3.896 7 N -0.562 5.562 8 C 0.055 3.945 9 C 0.516 3.484 10 O -0.556 6.556 11 C 0.033 3.967 12 H 0.047 0.953 13 C -0.122 4.122 14 C -0.532 4.532 15 H 0.047 0.953 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.280 1.280 22 C -0.155 4.155 23 C -0.186 4.186 24 H 0.124 0.876 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.159 0.841 28 H 0.165 0.835 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.266 0.734 36 H 0.146 0.854 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -17.385 -0.089 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.041 3.959 4 C -0.144 4.144 5 C -0.138 4.138 6 C 0.010 3.990 7 N -0.284 5.284 8 C -0.085 4.085 9 C 0.309 3.691 10 O -0.435 6.435 11 C 0.012 3.988 12 H 0.065 0.935 13 C -0.179 4.179 14 C -0.571 4.571 15 H 0.065 0.935 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.205 1.205 22 C -0.175 4.175 23 C -0.205 4.205 24 H 0.142 0.858 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.684 -17.364 -0.214 17.379 hybrid contribution -1.102 1.230 0.158 1.659 sum -0.418 -16.134 -0.056 16.140 Atomic orbital electron populations 1.23280 0.77056 1.05454 1.01725 1.86013 1.22897 1.26259 1.89220 1.19161 0.92991 0.84145 0.99609 1.20485 0.91163 0.98560 1.04238 1.20939 1.01023 0.89131 1.02720 1.18314 0.92287 0.85725 1.02672 1.45754 1.09972 1.03882 1.68842 1.22452 0.76813 1.05677 1.03606 1.22005 0.86545 0.87031 0.73567 1.90261 1.18280 1.86953 1.48034 1.18808 0.95829 0.87030 0.97182 0.93507 1.21691 0.98532 1.02174 0.95542 1.21224 0.92974 0.92355 1.50512 0.93506 1.25542 0.97500 0.99977 0.94539 1.69939 1.15949 1.18635 1.50149 0.85609 0.79317 0.78593 0.78468 1.19876 1.19892 1.20531 1.22165 0.94588 0.99923 1.00827 1.21316 1.00720 0.91432 1.07065 0.85759 0.92435 0.92536 0.82315 0.81786 0.90796 0.87406 0.89122 0.92406 0.96138 0.90591 0.92458 0.83739 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -7.89 10.50 -93.17 -0.98 -8.87 16 3 C 0.09 2.38 6.69 22.50 0.15 2.53 16 4 C -0.13 -3.09 9.98 22.35 0.22 -2.87 16 5 C -0.12 -3.08 9.26 22.38 0.21 -2.87 16 6 C 0.10 3.64 6.48 38.11 0.25 3.88 16 7 N -0.56 -20.77 3.10 -654.43 -2.03 -22.81 16 8 C 0.06 1.48 9.43 127.77 1.21 2.68 16 9 C 0.52 24.18 6.77 87.66 0.59 24.77 16 10 O -0.56 -29.45 12.17 -3.05 -0.04 -29.49 16 11 C 0.03 1.62 1.81 -12.28 -0.02 1.60 16 12 H 0.05 2.35 7.60 -2.39 -0.02 2.33 16 13 C -0.12 -5.52 8.49 71.98 0.61 -4.91 16 14 C -0.53 -30.49 8.35 25.60 0.21 -30.28 16 15 H 0.05 2.87 6.89 -2.91 -0.02 2.85 16 16 C 0.02 1.33 5.30 84.65 0.45 1.78 16 17 N -0.91 -49.90 11.39 21.45 0.24 -49.65 16 18 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 C -0.16 -5.88 8.96 22.38 0.20 -5.68 16 23 C -0.19 -5.76 9.03 22.35 0.20 -5.55 16 24 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 27 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.16 3.08 6.07 -2.91 -0.02 3.06 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 2.03 6.11 -2.39 -0.01 2.02 16 31 H 0.09 2.58 4.30 -2.38 -0.01 2.57 16 32 H 0.06 2.12 5.70 -2.39 -0.01 2.10 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 3.71 6.27 -2.39 -0.01 3.69 16 35 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.15 6.54 4.77 -41.16 -0.20 6.34 16 37 H 0.14 3.70 6.29 -2.91 -0.02 3.68 16 Total: -1.00 -68.60 298.50 5.53 -63.07 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.91 Total: 14.79 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.39 Total: -13.47 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.79 Total: -72.46 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.02 Total: -38.36 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.60 5.53 -63.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597809028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.688 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds