Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99651 * 2 1 4 4 C 1.38728 * 119.98101 * 180.02562 * 3 2 1 5 5 C 1.38090 * 120.01307 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98314 * 0.02562 * 5 4 3 7 7 N 1.40117 * 120.01057 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99787 * 245.14576 * 7 6 5 9 9 C 1.34776 * 120.00071 * 65.15128 * 7 6 5 10 10 O 1.21288 * 119.99850 * 354.55217 * 9 7 6 11 11 C 1.50694 * 119.99729 * 174.55762 * 9 7 6 12 12 H 1.09005 * 109.47595 * 59.99537 * 11 9 7 13 13 C 1.53000 * 109.47163 * 299.99419 * 11 9 7 14 14 C 1.50706 * 109.47166 * 179.97438 * 11 9 7 15 15 H 1.08000 * 119.99780 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00116 * 179.72151 * 14 11 9 17 17 N 1.31513 * 119.99798 * 0.27923 * 16 14 11 18 18 Si 1.86799 * 119.99904 * 180.27183 * 16 14 11 19 19 H 1.48499 * 109.47034 * 60.00323 * 18 16 14 20 20 H 1.48502 * 109.47037 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47408 * 300.00154 * 18 16 14 22 22 C 1.38849 * 119.97175 * 0.27135 * 6 5 4 23 23 C 1.38085 * 119.98349 * 359.45471 * 22 6 5 24 24 H 1.09009 * 109.47017 * 299.99729 * 1 2 3 25 25 H 1.08997 * 109.47287 * 59.99284 * 1 2 3 26 26 H 1.09001 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99166 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.00958 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47038 * 270.00681 * 8 7 6 30 30 H 1.09007 * 109.46871 * 29.99924 * 8 7 6 31 31 H 1.08994 * 109.47199 * 150.00416 * 8 7 6 32 32 H 1.09002 * 109.47061 * 59.99966 * 13 11 9 33 33 H 1.09001 * 109.47426 * 180.02562 * 13 11 9 34 34 H 1.08999 * 109.47388 * 300.00447 * 13 11 9 35 35 H 0.97003 * 120.00015 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.00490 * 179.70170 * 22 6 5 37 37 H 1.07996 * 119.99047 * 180.27336 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0592 2.5139 0.0000 6 6 3.3032 3.6785 0.0016 7 7 3.9393 4.9269 0.0016 8 6 3.7981 5.8210 1.1536 9 6 4.6810 5.3054 -1.0582 10 8 4.8795 4.5282 -1.9680 11 6 5.2638 6.6940 -1.1126 12 1 5.9267 6.8436 -0.2603 13 6 4.1332 7.7238 -1.0663 14 6 6.0443 6.8615 -2.3909 15 1 6.1119 6.0439 -3.0934 16 6 6.6677 8.0601 -2.6660 17 7 6.5858 9.0554 -1.8104 18 14 7.6287 8.2701 -4.2540 19 1 6.7225 8.0630 -5.4121 20 1 8.1979 9.6406 -4.3105 21 1 8.7290 7.2742 -4.3022 22 6 1.9166 3.6054 0.0084 23 6 1.2904 2.3748 0.0021 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0195 0.3778 -0.0014 28 1 5.1376 2.5700 0.0000 29 1 2.9316 6.4663 1.0086 30 1 3.6626 5.2287 2.0587 31 1 4.6948 6.4330 1.2506 32 1 3.5690 7.6025 -0.1415 33 1 4.5547 8.7282 -1.1061 34 1 3.4703 7.5742 -1.9185 35 1 7.0240 9.8989 -2.0041 36 1 1.3281 4.5110 0.0145 37 1 0.2120 2.3178 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597809029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = -37.146023 kcal Electronic energy + Delta-G solvation = -19686.674973 eV Core-core repulsion = 16622.983477 eV Total energy + Delta-G solvation = -3063.691495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30643 -39.20508 -37.07943 -34.63265 -33.75344 -31.03068 -30.73855 -29.03005 -27.28838 -26.21064 -25.09803 -23.19993 -22.50073 -21.26976 -18.87611 -18.13357 -16.67871 -16.33795 -15.95297 -15.80176 -15.52420 -14.65224 -14.50228 -14.39240 -13.62559 -13.43134 -13.26812 -12.92008 -12.59124 -12.47252 -12.22342 -11.98275 -11.91183 -11.26829 -11.09677 -10.98046 -10.84526 -10.73049 -10.51633 -10.26987 -9.97077 -8.98519 -8.91312 -8.71132 -8.57559 -8.32638 -7.67783 -6.03461 -4.06627 1.44884 1.48524 3.22296 3.36757 3.38930 3.43923 3.58788 3.61731 3.87157 4.46959 4.79971 4.92021 4.99451 5.03759 5.28688 5.29757 5.39837 5.45270 5.54949 5.68216 5.80776 5.96196 6.02002 6.09646 6.12326 6.35937 6.64266 6.68074 6.71833 6.85227 6.92877 7.24526 7.41858 7.52765 7.73207 7.93584 8.07786 8.35020 9.01467 9.16630 9.58794 11.04059 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.004423 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.093366 B = 6329.452911 C = 6696.651805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.112 3.888 4 C -0.140 4.140 5 C -0.068 4.068 6 C 0.123 3.877 7 N -0.591 5.591 8 C 0.087 3.913 9 C 0.521 3.479 10 O -0.530 6.530 11 C 0.034 3.966 12 H 0.054 0.946 13 C -0.141 4.141 14 C -0.503 4.503 15 H 0.073 0.927 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.089 4.089 23 C -0.198 4.198 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.093 0.907 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 -10.986 8.449 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.067 3.933 4 C -0.159 4.159 5 C -0.088 4.088 6 C 0.032 3.968 7 N -0.323 5.323 8 C -0.055 4.055 9 C 0.313 3.687 10 O -0.404 6.404 11 C 0.014 3.986 12 H 0.072 0.928 13 C -0.199 4.199 14 C -0.541 4.541 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.108 4.108 23 C -0.218 4.218 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.160 -11.357 7.949 17.797 hybrid contribution 0.149 0.410 -0.782 0.896 sum -11.011 -10.948 7.166 17.101 Atomic orbital electron populations 1.23010 0.78784 1.03590 1.01303 1.86062 1.21076 1.27118 1.89153 1.18970 0.92285 0.83951 0.98071 1.20267 0.91209 0.98213 1.06258 1.21115 1.00358 0.90670 0.96670 1.17650 0.90779 0.86021 1.02339 1.45874 1.51620 1.15328 1.19509 1.21904 1.03054 0.93616 0.86963 1.22269 0.75594 0.91508 0.79286 1.90555 1.57874 1.54926 1.37032 1.18855 0.94658 0.85137 0.99994 0.92842 1.21927 0.96892 1.03706 0.97398 1.21116 1.30221 0.98996 1.03764 0.90867 1.24930 0.96388 0.95681 0.97119 1.69857 1.44344 1.03688 1.35720 0.86504 0.80223 0.76856 0.83557 1.20206 1.21354 1.20156 1.21016 0.93595 0.97376 0.98856 1.21009 0.99682 0.91875 1.09207 0.92801 0.92723 0.88518 0.85138 0.85168 0.92489 0.92183 0.89748 0.95787 0.88812 0.95203 0.92891 0.85638 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.99 10.50 -19.66 -0.21 -4.19 16 3 C 0.11 1.56 6.69 -39.22 -0.26 1.30 16 4 C -0.14 -2.07 9.98 -39.45 -0.39 -2.46 16 5 C -0.07 -1.14 9.19 -39.41 -0.36 -1.50 16 6 C 0.12 2.14 4.91 -83.62 -0.41 1.73 16 7 N -0.59 -11.06 2.94 -120.78 -0.35 -11.41 16 8 C 0.09 1.28 8.73 59.85 0.52 1.81 16 9 C 0.52 12.23 6.91 -10.99 -0.08 12.15 16 10 O -0.53 -14.19 14.94 5.55 0.08 -14.11 16 11 C 0.03 0.86 1.84 -92.92 -0.17 0.69 16 12 H 0.05 1.36 7.24 -51.93 -0.38 0.98 16 13 C -0.14 -3.23 8.70 37.16 0.32 -2.91 16 14 C -0.50 -14.33 8.38 -34.44 -0.29 -14.62 16 15 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.90 -25.01 11.31 55.43 0.63 -24.38 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.09 -1.32 9.81 -39.41 -0.39 -1.71 16 23 C -0.20 -2.61 9.03 -39.46 -0.36 -2.96 16 24 H 0.05 0.37 7.66 -51.92 -0.40 -0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.06 0.77 6.75 -51.93 -0.35 0.42 16 30 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 31 H 0.08 1.30 6.32 -51.93 -0.33 0.97 16 32 H 0.02 0.45 4.82 -51.93 -0.25 0.20 16 33 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -32.27 306.16 -5.99 -38.26 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.77 Total: 0.04 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.96 Total: -5.70 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.27 Total: -35.79 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.12 Total: -18.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.27 -5.99 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597809029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.111 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds