Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99651 * 2 1 4 4 C 1.38728 * 119.98101 * 180.02562 * 3 2 1 5 5 C 1.38090 * 120.01307 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98314 * 0.02562 * 5 4 3 7 7 N 1.40117 * 120.01057 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99787 * 245.14576 * 7 6 5 9 9 C 1.34776 * 120.00071 * 65.15128 * 7 6 5 10 10 O 1.21288 * 119.99850 * 354.55217 * 9 7 6 11 11 C 1.50694 * 119.99729 * 174.55762 * 9 7 6 12 12 H 1.09005 * 109.47595 * 59.99537 * 11 9 7 13 13 C 1.53000 * 109.47163 * 299.99419 * 11 9 7 14 14 C 1.50706 * 109.47166 * 179.97438 * 11 9 7 15 15 H 1.08000 * 119.99780 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00116 * 179.72151 * 14 11 9 17 17 N 1.31513 * 119.99798 * 0.27923 * 16 14 11 18 18 Si 1.86799 * 119.99904 * 180.27183 * 16 14 11 19 19 H 1.48499 * 109.47034 * 60.00323 * 18 16 14 20 20 H 1.48502 * 109.47037 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47408 * 300.00154 * 18 16 14 22 22 C 1.38849 * 119.97175 * 0.27135 * 6 5 4 23 23 C 1.38085 * 119.98349 * 359.45471 * 22 6 5 24 24 H 1.09009 * 109.47017 * 299.99729 * 1 2 3 25 25 H 1.08997 * 109.47287 * 59.99284 * 1 2 3 26 26 H 1.09001 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99166 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.00958 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47038 * 270.00681 * 8 7 6 30 30 H 1.09007 * 109.46871 * 29.99924 * 8 7 6 31 31 H 1.08994 * 109.47199 * 150.00416 * 8 7 6 32 32 H 1.09002 * 109.47061 * 59.99966 * 13 11 9 33 33 H 1.09001 * 109.47426 * 180.02562 * 13 11 9 34 34 H 1.08999 * 109.47388 * 300.00447 * 13 11 9 35 35 H 0.97003 * 120.00015 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.00490 * 179.70170 * 22 6 5 37 37 H 1.07996 * 119.99047 * 180.27336 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0592 2.5139 0.0000 6 6 3.3032 3.6785 0.0016 7 7 3.9393 4.9269 0.0016 8 6 3.7981 5.8210 1.1536 9 6 4.6810 5.3054 -1.0582 10 8 4.8795 4.5282 -1.9680 11 6 5.2638 6.6940 -1.1126 12 1 5.9267 6.8436 -0.2603 13 6 4.1332 7.7238 -1.0663 14 6 6.0443 6.8615 -2.3909 15 1 6.1119 6.0439 -3.0934 16 6 6.6677 8.0601 -2.6660 17 7 6.5858 9.0554 -1.8104 18 14 7.6287 8.2701 -4.2540 19 1 6.7225 8.0630 -5.4121 20 1 8.1979 9.6406 -4.3105 21 1 8.7290 7.2742 -4.3022 22 6 1.9166 3.6054 0.0084 23 6 1.2904 2.3748 0.0021 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0195 0.3778 -0.0014 28 1 5.1376 2.5700 0.0000 29 1 2.9316 6.4663 1.0086 30 1 3.6626 5.2287 2.0587 31 1 4.6948 6.4330 1.2506 32 1 3.5690 7.6025 -0.1415 33 1 4.5547 8.7282 -1.1061 34 1 3.4703 7.5742 -1.9185 35 1 7.0240 9.8989 -2.0041 36 1 1.3281 4.5110 0.0145 37 1 0.2120 2.3178 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597809029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = -57.176177 kcal Electronic energy + Delta-G solvation = -19687.543545 eV Core-core repulsion = 16622.983477 eV Total energy + Delta-G solvation = -3064.560068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59479 -40.54059 -38.35740 -36.21217 -35.68416 -32.62852 -32.13644 -30.26305 -28.15373 -27.58793 -27.12449 -24.79382 -23.61880 -22.75864 -20.42704 -19.13743 -18.46614 -17.72972 -17.64698 -17.12181 -16.61458 -16.42651 -15.99786 -15.57233 -15.09940 -14.85378 -14.57234 -14.19932 -14.13915 -13.70690 -13.54992 -13.42662 -12.97500 -12.95215 -12.83379 -12.70386 -12.34924 -12.22613 -12.03394 -11.94828 -11.85360 -11.03526 -10.63596 -10.32860 -10.04318 -9.98365 -8.91963 -8.15693 -6.26124 0.30195 0.31414 1.40525 1.41929 1.50519 1.82932 2.10375 2.37940 2.45950 2.69586 3.13630 3.81492 3.89632 4.11074 4.28144 4.28679 4.35612 4.44148 4.49687 4.55788 4.64775 4.70909 4.76305 4.87236 4.94892 4.98235 4.99849 5.08466 5.25600 5.46788 5.49804 5.54949 5.73151 5.86596 6.05119 6.19073 6.43634 6.50388 6.81090 7.37384 7.46772 8.89786 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.004423 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.093366 B = 6329.452911 C = 6696.651805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.117 3.883 4 C -0.149 4.149 5 C -0.085 4.085 6 C 0.089 3.911 7 N -0.580 5.580 8 C 0.079 3.921 9 C 0.520 3.480 10 O -0.576 6.576 11 C 0.032 3.968 12 H 0.045 0.955 13 C -0.127 4.127 14 C -0.533 4.533 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.954 3.046 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.277 1.277 22 C -0.086 4.086 23 C -0.190 4.190 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.016 0.984 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.575 -11.453 9.309 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.071 3.929 4 C -0.168 4.168 5 C -0.105 4.105 6 C -0.002 4.002 7 N -0.310 5.310 8 C -0.062 4.062 9 C 0.312 3.688 10 O -0.454 6.454 11 C 0.011 3.989 12 H 0.063 0.937 13 C -0.184 4.184 14 C -0.572 4.572 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.197 1.197 21 H -0.202 1.202 22 C -0.106 4.106 23 C -0.209 4.209 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.160 0.840 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.316 -11.822 8.867 19.892 hybrid contribution 0.703 0.427 -0.972 1.273 sum -12.613 -11.395 7.895 18.742 Atomic orbital electron populations 1.23386 0.76287 1.05709 1.02425 1.86064 1.23626 1.26237 1.88672 1.19076 0.92102 0.85001 0.96695 1.20394 0.92281 0.97863 1.06254 1.21063 0.99722 0.91691 0.98006 1.17889 0.92018 0.85161 1.05126 1.45654 1.50079 1.16358 1.18872 1.22153 1.03390 0.93852 0.86781 1.21917 0.76207 0.90639 0.80054 1.90518 1.59985 1.55745 1.39182 1.18762 0.95059 0.87035 0.98035 0.93730 1.21746 0.96156 1.01585 0.98959 1.21263 1.32082 0.98739 1.05092 0.93629 1.25547 0.96950 0.95287 0.99854 1.69926 1.44353 1.03819 1.36636 0.85681 0.78889 0.77357 0.80131 1.20316 1.19678 1.20243 1.21188 0.92407 0.98895 0.98094 1.21343 1.01382 0.90716 1.07427 0.91178 0.91947 0.86156 0.83964 0.86950 0.90528 0.89072 0.90629 0.91672 0.90914 0.96434 0.92489 0.83944 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.35 10.50 -93.25 -0.98 -8.33 16 3 C 0.12 3.00 6.69 22.50 0.15 3.15 16 4 C -0.15 -4.31 9.98 22.35 0.22 -4.08 16 5 C -0.09 -2.89 9.19 22.38 0.21 -2.68 16 6 C 0.09 3.02 4.91 38.11 0.19 3.21 16 7 N -0.58 -21.54 2.94 -654.41 -1.92 -23.46 16 8 C 0.08 2.20 8.73 127.77 1.12 3.32 16 9 C 0.52 25.05 6.91 87.66 0.61 25.65 16 10 O -0.58 -32.24 14.94 -3.05 -0.05 -32.29 16 11 C 0.03 1.64 1.84 -12.29 -0.02 1.62 16 12 H 0.05 2.33 7.24 -2.38 -0.02 2.32 16 13 C -0.13 -5.78 8.70 71.98 0.63 -5.15 16 14 C -0.53 -31.44 8.38 25.60 0.21 -31.22 16 15 H 0.05 2.89 6.75 -2.91 -0.02 2.87 16 16 C 0.02 1.30 5.30 84.65 0.45 1.75 16 17 N -0.91 -50.87 11.31 21.45 0.24 -50.63 16 18 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 C -0.09 -2.37 9.81 22.38 0.22 -2.15 16 23 C -0.19 -4.39 9.03 22.35 0.20 -4.19 16 24 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 25 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.08 1.85 6.75 -2.39 -0.02 1.83 16 30 H 0.09 2.00 8.05 -2.38 -0.02 1.98 16 31 H 0.08 2.26 6.32 -2.39 -0.02 2.24 16 32 H 0.06 2.36 4.82 -2.39 -0.01 2.35 16 33 H 0.07 3.64 6.06 -2.39 -0.01 3.62 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.16 2.55 6.29 -2.91 -0.02 2.54 16 Total: -1.00 -71.73 306.16 5.68 -66.05 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.07 Total: 10.77 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.29 Total: -9.48 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.68 Total: -74.09 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.02 Total: -40.62 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.73 5.68 -66.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597809029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.869 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds