Wall clock time and date at job start Mon Mar 30 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 C 1.50701 * 109.47176 * 120.00046 * 2 1 3 5 5 O 1.33650 * 125.80622 * 300.19208 * 4 2 1 6 6 C 1.34208 * 110.91185 * 180.28622 * 5 4 2 7 7 C 1.34181 * 109.12224 * 359.71938 * 6 5 4 8 8 C 1.36420 * 125.79556 * 119.99638 * 4 2 1 9 9 C 1.47371 * 127.19951 * 359.97438 * 8 4 2 10 10 O 1.21620 * 119.99881 * 359.71060 * 9 8 4 11 11 N 1.34770 * 120.00426 * 179.70708 * 9 8 4 12 12 C 1.47586 * 134.49328 * 179.97438 * 11 9 8 13 13 C 1.53950 * 86.11354 * 155.35990 * 12 11 9 14 14 C 1.50706 * 113.73627 * 137.95493 * 13 12 11 15 15 H 1.07995 * 120.00167 * 1.64697 * 14 13 12 16 16 C 1.37879 * 119.99394 * 181.92396 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47487 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47233 * 120.00158 * 18 16 14 21 21 H 1.48508 * 109.46883 * 239.99963 * 18 16 14 22 22 C 1.47813 * 134.45830 * 359.86845 * 11 9 8 23 23 H 1.09000 * 109.46865 * 299.99887 * 1 2 3 24 24 H 1.09001 * 109.47127 * 59.99664 * 1 2 3 25 25 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46865 * 240.00113 * 2 1 3 27 27 H 1.09000 * 109.47039 * 60.00219 * 3 2 1 28 28 H 1.08997 * 109.47372 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47274 * 300.00246 * 3 2 1 30 30 H 1.08004 * 125.44076 * 179.72285 * 6 5 4 31 31 H 1.08004 * 127.02100 * 180.02562 * 7 6 5 32 32 H 1.09008 * 113.76654 * 41.06222 * 12 11 9 33 33 H 1.08991 * 113.77014 * 269.66271 * 12 11 9 34 34 H 1.09000 * 113.74485 * 269.15566 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 36 36 H 1.09002 * 113.76703 * 90.37825 * 22 11 9 37 37 H 1.08998 * 113.83277 * 318.91803 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7791 -0.3585 2.4947 6 6 2.3801 -1.1956 3.3545 7 6 3.0460 -2.1328 2.6627 8 6 2.8199 -1.8243 1.2431 9 6 3.3400 -2.5610 0.0775 10 8 3.0692 -2.1880 -1.0479 11 7 4.1160 -3.6479 0.2587 12 6 4.7902 -4.5998 -0.6455 13 6 5.7641 -4.8545 0.5192 14 6 6.1152 -6.3077 0.7096 15 1 5.7116 -7.0530 0.0403 16 6 6.9473 -6.6863 1.7418 17 7 7.4341 -5.7794 2.5604 18 14 7.3831 -8.4874 1.9773 19 1 6.7112 -9.3001 0.9319 20 1 8.8542 -8.6590 1.8690 21 1 6.9300 -8.9349 3.3189 22 6 4.6347 -4.3638 1.4433 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 2.3349 -1.1260 4.4314 31 1 3.6287 -2.9477 3.0663 32 1 5.2549 -4.1288 -1.5118 33 1 4.1808 -5.4651 -0.9059 34 1 6.6384 -4.2037 0.5106 35 1 8.0192 -6.0458 3.2867 36 1 3.9796 -5.1598 1.7973 37 1 4.9754 -3.7048 2.2419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598024550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:14 Heat of formation + Delta-G solvation = -16.195040 kcal Electronic energy + Delta-G solvation = -19760.488170 eV Core-core repulsion = 16697.705178 eV Total energy + Delta-G solvation = -3062.782992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.59853 -40.87111 -38.66743 -36.41613 -34.66061 -33.90666 -30.94068 -29.99126 -28.10511 -27.24491 -26.97071 -24.24769 -23.44489 -21.91741 -21.12309 -19.67203 -18.78998 -18.21035 -17.30221 -17.19109 -16.60608 -16.50896 -16.11879 -15.75611 -15.29235 -14.96552 -14.31477 -14.15986 -14.05054 -13.70423 -13.63402 -13.33526 -13.12795 -13.07837 -12.78713 -12.58907 -12.27709 -12.22533 -12.18768 -11.96260 -11.36198 -11.12425 -10.84700 -10.73812 -10.52678 -9.73779 -9.43319 -8.16776 -6.28088 0.31513 1.10434 1.45872 1.49532 1.60000 1.75892 2.05971 2.30417 2.46647 3.14193 3.46800 3.55254 3.83835 4.00061 4.11566 4.22982 4.30416 4.40008 4.50329 4.58211 4.61421 4.66203 4.73513 4.80113 4.83455 4.87285 4.95450 5.00972 5.06588 5.13655 5.27323 5.27499 5.40861 5.58043 5.80705 6.04353 6.21102 6.79454 6.83070 7.14573 7.41994 8.93350 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034957 B = 0.004609 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.789759 B = 6074.225963 C = 6556.852160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C -0.139 4.139 4 C 0.081 3.919 5 O -0.170 6.170 6 C -0.023 4.023 7 C -0.212 4.212 8 C -0.267 4.267 9 C 0.591 3.409 10 O -0.591 6.591 11 N -0.636 5.636 12 C 0.111 3.889 13 C 0.023 3.977 14 C -0.531 4.531 15 H 0.066 0.934 16 C 0.023 3.977 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.279 1.279 22 C 0.122 3.878 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.254 0.746 31 H 0.159 0.841 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.078 0.922 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 10.371 1.946 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C -0.196 4.196 4 C 0.027 3.973 5 O -0.065 6.065 6 C -0.088 4.088 7 C -0.231 4.231 8 C -0.271 4.271 9 C 0.384 3.616 10 O -0.476 6.476 11 N -0.368 5.368 12 C -0.011 4.011 13 C 0.004 3.996 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.177 4.177 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.205 1.205 22 C 0.000 4.000 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.270 0.730 31 H 0.177 0.823 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.833 10.978 1.594 16.220 hybrid contribution 0.845 -1.344 0.307 1.617 sum -10.988 9.634 1.901 14.736 Atomic orbital electron populations 1.21802 0.91613 1.02157 1.03921 1.20341 0.98029 0.96974 0.90322 1.21807 1.00723 0.93115 1.03941 1.23048 0.95546 0.93627 0.85050 1.83733 1.59463 1.48686 1.14655 1.24652 0.97097 0.90256 0.96829 1.23333 1.05240 1.03536 0.90963 1.21242 1.09701 1.01842 0.94356 1.17369 0.76615 0.79885 0.87721 1.90600 1.61507 1.69610 1.25859 1.50272 1.48037 1.25515 1.12960 1.23417 0.92640 0.89702 0.95362 1.20422 0.92069 0.96508 0.90629 1.21287 1.29542 0.92178 1.13854 0.91605 1.25732 0.95073 1.01521 0.95416 1.70060 1.33227 1.34951 1.17318 0.85500 0.77783 0.80205 0.78132 1.18944 1.20911 1.20501 1.23581 0.94325 0.92496 0.89626 0.91066 0.89466 0.93507 0.87871 0.91049 0.93686 0.89422 0.72989 0.82340 0.91678 0.89688 0.94707 0.92608 0.90407 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.18 71.98 0.66 -2.19 16 2 C -0.04 -1.03 3.25 -11.54 -0.04 -1.06 16 3 C -0.14 -2.94 9.18 71.98 0.66 -2.28 16 4 C 0.08 2.51 5.88 25.26 0.15 2.66 16 5 O -0.17 -4.49 10.52 4.56 0.05 -4.44 16 6 C -0.02 -0.55 12.03 66.89 0.80 0.25 16 7 C -0.21 -6.63 10.07 23.65 0.24 -6.39 16 8 C -0.27 -9.83 6.30 -18.99 -0.12 -9.95 16 9 C 0.59 25.56 8.04 86.65 0.70 26.25 16 10 O -0.59 -27.36 15.23 -4.09 -0.06 -27.42 16 11 N -0.64 -27.69 3.61 -840.06 -3.03 -30.73 16 12 C 0.11 4.78 8.39 86.49 0.73 5.51 16 13 C 0.02 1.11 3.60 -10.87 -0.04 1.07 16 14 C -0.53 -27.11 8.77 25.60 0.22 -26.89 16 15 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 16 C 0.02 1.18 5.46 84.66 0.46 1.64 16 17 N -0.92 -49.86 13.29 21.45 0.28 -49.58 16 18 Si 0.96 40.74 29.54 68.60 2.03 42.76 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.12 5.31 6.82 86.44 0.59 5.90 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 3.39 5.52 -2.39 -0.01 3.38 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.25 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.16 5.04 5.49 -2.91 -0.02 5.02 16 32 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 34 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.08 3.33 8.09 -2.39 -0.02 3.31 16 37 H 0.07 2.91 6.26 -2.39 -0.01 2.89 16 Total: -1.00 -63.18 313.25 5.34 -57.84 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.07 Total: 17.06 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.02 Total: -5.49 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.75 Total: -80.31 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.01 Total: -31.86 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -63.18 5.34 -57.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598024550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.643 kcal (2) G-P(sol) polarization free energy of solvation -63.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds