Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46953 * 2 1 4 4 O 1.33925 * 125.61762 * 269.95867 * 3 2 1 5 5 C 1.34913 * 109.38627 * 180.02562 * 4 3 2 6 6 C 1.46656 * 125.99150 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00293 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99727 * 359.97199 * 6 5 4 9 9 C 1.47064 * 136.05916 * 359.62908 * 8 6 5 10 10 C 1.53761 * 87.88949 * 152.96559 * 9 8 6 11 11 C 1.50698 * 114.08692 * 139.78273 * 10 9 8 12 12 H 1.08003 * 119.99464 * 266.56120 * 11 10 9 13 13 C 1.37872 * 120.00054 * 86.56159 * 11 10 9 14 14 N 1.31518 * 120.00195 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99918 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47279 * 90.00137 * 15 13 11 17 17 H 1.48511 * 109.46880 * 209.99894 * 15 13 11 18 18 H 1.48500 * 109.47278 * 329.99583 * 15 13 11 19 19 C 1.47073 * 136.05708 * 180.02562 * 8 6 5 20 20 C 1.36546 * 108.02134 * 359.73035 * 5 4 3 21 21 C 1.35133 * 125.61524 * 90.00343 * 3 2 1 22 22 C 1.50703 * 126.44131 * 359.96109 * 21 3 2 23 23 H 1.09001 * 109.46787 * 299.99960 * 1 2 3 24 24 H 1.08997 * 109.46939 * 59.99720 * 1 2 3 25 25 H 1.08994 * 109.46698 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47068 * 240.00507 * 2 1 3 27 27 H 1.08993 * 109.47274 * 119.99911 * 2 1 3 28 28 H 1.09002 * 113.47137 * 267.69957 * 9 8 6 29 29 H 1.09004 * 113.46796 * 38.13891 * 9 8 6 30 30 H 1.08996 * 114.57084 * 272.66869 * 10 9 8 31 31 H 0.96992 * 120.00264 * 180.02562 * 14 13 11 32 32 H 1.08996 * 113.46629 * 321.86440 * 19 8 6 33 33 H 1.09002 * 113.46560 * 92.30367 * 19 8 6 34 34 H 1.08009 * 126.64685 * 180.26657 * 20 5 4 35 35 H 1.09002 * 109.47152 * 90.00179 * 22 21 3 36 36 H 1.09001 * 109.46980 * 330.00279 * 22 21 3 37 37 H 1.09004 * 109.47113 * 210.00260 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2930 2.1559 -1.0887 5 6 2.7251 3.3771 -0.7116 6 6 3.1117 4.4699 -1.6100 7 8 3.4870 5.5322 -1.1498 8 7 3.0514 4.2977 -2.9454 9 6 2.6733 3.2069 -3.8564 10 6 2.3049 4.2788 -4.8954 11 6 2.7073 3.9324 -6.3057 12 1 3.6562 4.2708 -6.6950 13 6 1.8642 3.1835 -7.0990 14 7 2.2152 2.8815 -8.3300 15 14 0.2228 2.5989 -6.4258 16 1 -0.8198 3.6175 -6.7097 17 1 -0.1494 1.3156 -7.0741 18 1 0.3326 2.3984 -4.9585 19 6 3.3415 5.1156 -4.1327 20 6 2.7329 3.4196 0.6532 21 6 2.2947 2.1628 1.0986 22 6 2.1392 1.7253 2.5323 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.5138 2.5815 -4.1573 29 1 1.8191 2.6265 -3.5077 30 1 1.2840 4.6529 -4.8182 31 1 1.6220 2.3550 -8.8881 32 1 3.0568 6.1616 -4.0194 33 1 4.3582 4.9931 -4.5064 34 1 3.0231 4.2571 1.2704 35 1 3.0705 1.2768 2.8783 36 1 1.3349 0.9931 2.6036 37 1 1.8999 2.5895 3.1520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = 3.691136 kcal Electronic energy + Delta-G solvation = -19720.555202 eV Core-core repulsion = 16658.634539 eV Total energy + Delta-G solvation = -3061.920663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.66162 -39.53602 -37.31066 -34.95333 -33.37990 -32.67809 -30.31090 -29.33628 -27.27780 -25.68156 -25.13124 -23.77291 -21.67826 -20.86238 -19.70990 -18.52503 -17.30447 -16.92905 -16.39941 -15.84996 -15.45499 -14.89309 -14.64620 -14.10142 -13.59864 -13.49338 -13.22888 -13.10915 -12.93832 -12.68627 -12.64813 -12.44760 -12.19335 -11.85413 -11.70216 -11.56868 -11.17899 -10.90493 -10.72863 -10.14188 -10.02566 -9.65631 -9.52278 -9.25472 -8.68543 -8.46138 -8.05875 -6.23206 -4.26142 1.21049 2.30537 2.73559 3.19957 3.28732 3.30097 3.36352 3.51160 4.29367 4.47627 4.71087 4.77024 4.89224 5.00208 5.00805 5.22699 5.26529 5.46447 5.53351 5.57443 5.67107 5.71763 5.78890 5.87296 5.89614 5.94925 5.99049 6.09240 6.22201 6.34804 6.42053 6.45898 6.47621 7.05343 7.11014 7.51622 8.14674 8.32463 8.46501 8.80136 9.37773 10.88666 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.006052 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.686391 B = 4625.152691 C = 5734.574630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C 0.011 3.989 4 O -0.151 6.151 5 C -0.057 4.057 6 C 0.616 3.384 7 O -0.542 6.542 8 N -0.634 5.634 9 C 0.088 3.912 10 C -0.007 4.007 11 C -0.513 4.513 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.891 5.891 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.260 1.260 19 C 0.116 3.884 20 C -0.129 4.129 21 C -0.193 4.193 22 C -0.079 4.079 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.267 0.733 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 -6.542 17.757 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.042 4.042 4 O -0.046 6.046 5 C -0.109 4.109 6 C 0.405 3.595 7 O -0.423 6.423 8 N -0.366 5.366 9 C -0.034 4.034 10 C -0.026 4.026 11 C -0.551 4.551 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.184 1.184 19 C -0.005 4.005 20 C -0.149 4.149 21 C -0.194 4.194 22 C -0.136 4.136 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.648 -6.144 17.703 18.925 hybrid contribution -0.775 -0.366 0.367 0.933 sum -3.424 -6.510 18.070 19.509 Atomic orbital electron populations 1.21784 0.93715 1.02433 1.02879 1.20149 0.96569 0.87268 1.04324 1.22599 1.02505 0.95103 0.83986 1.84128 1.64099 1.22076 1.34309 1.22142 1.09107 0.85342 0.94300 1.16094 0.78468 0.84953 0.79999 1.90824 1.50250 1.25717 1.75512 1.49901 1.63326 1.20568 1.02850 1.24069 0.99484 0.92684 0.87198 1.20825 0.95360 0.91987 0.94448 1.20749 1.06167 1.34279 0.93886 0.90086 1.24987 0.97972 0.95129 0.94423 1.69887 1.37418 1.37948 1.07479 0.86927 0.84397 0.78603 0.80122 1.20077 1.21155 1.18409 1.23198 1.00954 0.96065 0.80311 1.21724 1.02005 0.98372 0.92828 1.20126 1.08362 0.94430 0.96482 1.20159 1.01783 1.01365 0.90289 0.92175 0.91993 0.91448 0.89641 0.88746 0.89510 0.91876 0.92008 0.92317 0.91575 0.89691 0.82539 0.91511 0.91645 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.05 -0.44 6.08 -27.88 -0.17 -0.61 16 3 C 0.01 0.15 6.57 -35.41 -0.23 -0.09 16 4 O -0.15 -2.58 9.25 5.01 0.05 -2.53 16 5 C -0.06 -1.02 7.09 -36.80 -0.26 -1.28 16 6 C 0.62 12.64 8.04 -12.86 -0.10 12.53 16 7 O -0.54 -12.14 17.64 5.19 0.09 -12.04 16 8 N -0.63 -13.07 3.69 -186.60 -0.69 -13.75 16 9 C 0.09 1.82 6.83 -8.37 -0.06 1.76 16 10 C -0.01 -0.15 2.98 -91.11 -0.27 -0.42 16 11 C -0.51 -13.31 9.37 -34.44 -0.32 -13.64 16 12 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -25.64 13.96 55.43 0.77 -24.86 16 15 Si 0.87 20.07 27.15 -169.99 -4.61 15.46 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.26 -5.66 5.73 56.52 0.32 -5.34 16 19 C 0.12 2.36 8.18 -8.50 -0.07 2.29 16 20 C -0.13 -1.98 10.57 -39.40 -0.42 -2.39 16 21 C -0.19 -2.49 6.14 -104.93 -0.64 -3.14 16 22 C -0.08 -0.71 9.98 36.01 0.36 -0.35 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.68 7.75 -51.93 -0.40 0.28 16 28 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 29 H 0.06 1.29 6.51 -51.93 -0.34 0.95 16 30 H 0.06 1.38 7.03 -51.93 -0.37 1.01 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 34 H 0.16 2.21 8.06 -52.48 -0.42 1.78 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.48 7.77 -51.93 -0.40 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -30.52 315.47 -6.92 -37.44 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.37 Total: -0.18 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.92 Total: -4.28 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.09 Total: -38.62 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.14 Total: -14.58 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.61 Total: 15.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.52 -6.92 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.134 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds