Wall clock time and date at job start Mon Mar 30 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46953 * 2 1 4 4 O 1.33925 * 125.61762 * 269.95867 * 3 2 1 5 5 C 1.34913 * 109.38627 * 180.02562 * 4 3 2 6 6 C 1.46656 * 125.99150 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00293 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99727 * 359.97199 * 6 5 4 9 9 C 1.47064 * 136.05916 * 359.62908 * 8 6 5 10 10 C 1.53761 * 87.88949 * 152.96559 * 9 8 6 11 11 C 1.50698 * 114.08692 * 139.78273 * 10 9 8 12 12 H 1.08003 * 119.99464 * 266.56120 * 11 10 9 13 13 C 1.37872 * 120.00054 * 86.56159 * 11 10 9 14 14 N 1.31518 * 120.00195 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99918 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47279 * 90.00137 * 15 13 11 17 17 H 1.48511 * 109.46880 * 209.99894 * 15 13 11 18 18 H 1.48500 * 109.47278 * 329.99583 * 15 13 11 19 19 C 1.47073 * 136.05708 * 180.02562 * 8 6 5 20 20 C 1.36546 * 108.02134 * 359.73035 * 5 4 3 21 21 C 1.35133 * 125.61524 * 90.00343 * 3 2 1 22 22 C 1.50703 * 126.44131 * 359.96109 * 21 3 2 23 23 H 1.09001 * 109.46787 * 299.99960 * 1 2 3 24 24 H 1.08997 * 109.46939 * 59.99720 * 1 2 3 25 25 H 1.08994 * 109.46698 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47068 * 240.00507 * 2 1 3 27 27 H 1.08993 * 109.47274 * 119.99911 * 2 1 3 28 28 H 1.09002 * 113.47137 * 267.69957 * 9 8 6 29 29 H 1.09004 * 113.46796 * 38.13891 * 9 8 6 30 30 H 1.08996 * 114.57084 * 272.66869 * 10 9 8 31 31 H 0.96992 * 120.00264 * 180.02562 * 14 13 11 32 32 H 1.08996 * 113.46629 * 321.86440 * 19 8 6 33 33 H 1.09002 * 113.46560 * 92.30367 * 19 8 6 34 34 H 1.08009 * 126.64685 * 180.26657 * 20 5 4 35 35 H 1.09002 * 109.47152 * 90.00179 * 22 21 3 36 36 H 1.09001 * 109.46980 * 330.00279 * 22 21 3 37 37 H 1.09004 * 109.47113 * 210.00260 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2930 2.1559 -1.0887 5 6 2.7251 3.3771 -0.7116 6 6 3.1117 4.4699 -1.6100 7 8 3.4870 5.5322 -1.1498 8 7 3.0514 4.2977 -2.9454 9 6 2.6733 3.2069 -3.8564 10 6 2.3049 4.2788 -4.8954 11 6 2.7073 3.9324 -6.3057 12 1 3.6562 4.2708 -6.6950 13 6 1.8642 3.1835 -7.0990 14 7 2.2152 2.8815 -8.3300 15 14 0.2228 2.5989 -6.4258 16 1 -0.8198 3.6175 -6.7097 17 1 -0.1494 1.3156 -7.0741 18 1 0.3326 2.3984 -4.9585 19 6 3.3415 5.1156 -4.1327 20 6 2.7329 3.4196 0.6532 21 6 2.2947 2.1628 1.0986 22 6 2.1392 1.7253 2.5323 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.5138 2.5815 -4.1573 29 1 1.8191 2.6265 -3.5077 30 1 1.2840 4.6529 -4.8182 31 1 1.6220 2.3550 -8.8881 32 1 3.0568 6.1616 -4.0194 33 1 4.3582 4.9931 -4.5064 34 1 3.0231 4.2571 1.2704 35 1 3.0705 1.2768 2.8783 36 1 1.3349 0.9931 2.6036 37 1 1.8999 2.5895 3.1520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:17 Heat of formation + Delta-G solvation = -14.823373 kcal Electronic energy + Delta-G solvation = -19721.358051 eV Core-core repulsion = 16658.634539 eV Total energy + Delta-G solvation = -3062.723512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.81886 -41.18171 -38.97059 -35.88281 -34.70908 -34.32739 -31.86628 -30.56260 -28.34822 -27.21545 -26.85731 -24.89967 -22.84020 -22.21056 -21.19512 -19.93372 -19.20312 -18.42582 -17.64875 -17.32993 -16.72210 -16.50727 -15.90984 -15.42648 -15.17269 -14.86193 -14.52122 -14.22422 -14.08902 -13.92283 -13.58587 -13.51903 -13.49829 -13.35753 -12.96113 -12.72023 -12.59890 -12.28877 -11.93066 -11.89746 -11.78399 -11.30868 -11.16708 -10.77521 -10.70316 -9.89991 -9.38377 -8.30651 -6.38292 -0.06684 1.23238 1.38165 1.40749 1.49318 1.51281 1.90862 2.03569 2.35559 2.99491 3.30353 3.68279 3.78914 3.93156 4.15545 4.17820 4.24357 4.30731 4.36608 4.45972 4.51575 4.57794 4.68092 4.73038 4.78216 4.86900 4.92910 4.94488 5.02024 5.06307 5.10241 5.28802 5.30136 5.55200 5.56240 5.91076 6.24741 6.54593 6.68617 6.87163 7.29250 8.84658 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.006052 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.686391 B = 4625.152691 C = 5734.574630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C 0.014 3.986 4 O -0.171 6.171 5 C -0.102 4.102 6 C 0.615 3.385 7 O -0.570 6.570 8 N -0.639 5.639 9 C 0.103 3.897 10 C -0.011 4.011 11 C -0.513 4.513 12 H 0.047 0.953 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.240 1.240 19 C 0.118 3.882 20 C -0.116 4.116 21 C -0.193 4.193 22 C -0.078 4.078 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.269 0.731 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.165 0.835 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -8.305 20.734 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.038 4.038 4 O -0.068 6.068 5 C -0.153 4.153 6 C 0.406 3.594 7 O -0.453 6.453 8 N -0.371 5.371 9 C -0.020 4.020 10 C -0.031 4.031 11 C -0.551 4.551 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.578 5.578 15 Si 0.758 3.242 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.163 1.163 19 C -0.003 4.003 20 C -0.137 4.137 21 C -0.194 4.194 22 C -0.134 4.134 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.145 0.855 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.182 0.818 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.073 -7.901 20.703 22.530 hybrid contribution -0.270 0.163 -0.493 0.585 sum -4.343 -7.738 20.210 22.072 Atomic orbital electron populations 1.21788 0.92906 1.03787 1.02120 1.20438 0.97106 0.84861 1.05978 1.23550 1.00652 0.96272 0.83340 1.84086 1.64727 1.21976 1.36000 1.21732 1.13145 0.85848 0.94593 1.16407 0.77687 0.85407 0.79865 1.90787 1.51584 1.27081 1.75879 1.49857 1.63788 1.20275 1.03138 1.23788 0.99619 0.92158 0.86416 1.20735 0.96033 0.93541 0.92749 1.20883 1.04834 1.33668 0.95744 0.93492 1.25782 1.01712 0.95323 0.94484 1.70019 1.39147 1.39493 1.09123 0.85934 0.79688 0.78058 0.80497 1.19637 1.20933 1.16348 1.23117 1.00529 0.96457 0.80240 1.22054 1.00069 0.99624 0.91964 1.20577 1.07332 0.93047 0.98491 1.20300 1.03392 1.02349 0.87402 0.91465 0.94235 0.89067 0.89577 0.85500 0.89640 0.91219 0.91505 0.92178 0.90648 0.89542 0.81782 0.90052 0.89460 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.05 -0.73 6.08 29.85 0.18 -0.55 16 3 C 0.01 0.35 6.57 24.97 0.16 0.51 16 4 O -0.17 -5.64 9.25 -4.98 -0.05 -5.69 16 5 C -0.10 -3.60 7.09 24.07 0.17 -3.43 16 6 C 0.61 25.25 8.04 86.44 0.69 25.95 16 7 O -0.57 -25.70 17.64 -4.34 -0.08 -25.77 16 8 N -0.64 -26.24 3.69 -862.50 -3.18 -29.42 16 9 C 0.10 4.19 6.83 83.27 0.57 4.76 16 10 C -0.01 -0.49 2.98 -11.11 -0.03 -0.52 16 11 C -0.51 -27.21 9.37 25.60 0.24 -26.97 16 12 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 13 C 0.03 1.42 5.47 84.65 0.46 1.88 16 14 N -0.94 -55.34 13.96 21.45 0.30 -55.04 16 15 Si 0.93 41.06 27.15 68.60 1.86 42.92 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.24 -9.69 5.73 99.48 0.57 -9.12 16 19 C 0.12 4.83 8.18 83.18 0.68 5.51 16 20 C -0.12 -3.40 10.57 22.39 0.24 -3.16 16 21 C -0.19 -4.42 6.14 -20.06 -0.12 -4.55 16 22 C -0.08 -1.05 9.98 71.24 0.71 -0.34 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.13 1.19 7.75 -2.39 -0.02 1.17 16 28 H 0.09 3.49 8.10 -2.39 -0.02 3.47 16 29 H 0.07 2.75 6.51 -2.38 -0.02 2.74 16 30 H 0.07 2.92 7.03 -2.39 -0.02 2.90 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.09 3.47 8.10 -2.39 -0.02 3.45 16 34 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.83 7.77 -2.39 -0.02 0.81 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -67.32 315.47 4.45 -62.87 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.92 Total: 12.43 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.67 Total: -2.30 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.88 Total: -84.46 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.12 Total: -31.46 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.86 Total: 42.92 kcal Total: -67.32 4.45 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.045 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds