Wall clock time and date at job start Mon Mar 30 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47269 * 2 1 4 4 C 1.35132 * 125.61101 * 89.97853 * 3 2 1 5 5 C 1.40377 * 107.10835 * 179.78156 * 4 3 2 6 6 C 1.50694 * 126.64047 * 180.22295 * 5 4 3 7 7 C 1.36539 * 106.71045 * 0.34992 * 5 4 3 8 8 C 1.46650 * 125.98811 * 179.91077 * 7 5 4 9 9 O 1.21699 * 120.00116 * 359.71492 * 8 7 5 10 10 N 1.34778 * 120.00356 * 179.71466 * 8 7 5 11 11 C 1.47579 * 134.49701 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11614 * 155.36008 * 11 10 8 13 13 C 1.50706 * 113.73809 * 137.95390 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.71966 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.47585 * 134.48633 * 0.02562 * 10 8 7 22 22 O 1.33932 * 125.61725 * 269.97760 * 3 2 1 23 23 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46945 * 300.00010 * 1 2 3 25 25 H 1.09007 * 109.47178 * 59.99498 * 1 2 3 26 26 H 1.09003 * 109.47345 * 240.00267 * 2 1 3 27 27 H 1.09000 * 109.47584 * 119.99942 * 2 1 3 28 28 H 1.07993 * 126.44742 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47604 * 270.14996 * 6 5 4 30 30 H 1.08997 * 109.47735 * 30.15168 * 6 5 4 31 31 H 1.08999 * 109.47342 * 150.15432 * 6 5 4 32 32 H 1.08997 * 113.76662 * 41.05329 * 11 10 8 33 33 H 1.09000 * 113.76483 * 269.66159 * 11 10 8 34 34 H 1.08994 * 113.74010 * 269.15100 * 12 11 10 35 35 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.77177 * 90.34376 * 21 10 8 37 37 H 1.08997 * 113.77427 * 318.93669 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2942 2.1628 1.0986 5 6 2.7430 3.4161 0.6531 6 6 3.1611 4.5798 1.5144 7 6 2.7244 3.3774 -0.7116 8 6 3.1119 4.4698 -1.6100 9 8 3.4876 5.5319 -1.1498 10 7 3.0519 4.2976 -2.9454 11 6 3.3545 5.1484 -4.1126 12 6 3.5682 3.8334 -4.8839 13 6 2.9795 3.8411 -6.2712 14 1 2.4621 4.7172 -6.6334 15 6 3.0970 2.7278 -7.0761 16 7 2.5828 2.7344 -8.2865 17 14 3.9851 1.2097 -6.4469 18 1 3.0138 0.3123 -5.7713 19 1 4.6102 0.4936 -7.5877 20 1 5.0375 1.6166 -5.4814 21 6 2.6571 3.1823 -3.8276 22 8 2.2927 2.1561 -1.0888 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1833 1.8492 2.1260 29 1 2.2941 5.2058 1.7254 30 1 3.5772 4.2080 2.4507 31 1 3.9145 5.1677 0.9901 32 1 4.2605 5.7436 -3.9993 33 1 2.5028 5.7306 -4.4644 34 1 4.5967 3.4733 -4.8608 35 1 2.6651 1.9511 -8.8527 36 1 1.6006 3.1869 -4.0958 37 1 3.0065 2.2076 -3.4869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:20 Heat of formation + Delta-G solvation = 1.162320 kcal Electronic energy + Delta-G solvation = -19820.968150 eV Core-core repulsion = 16758.937829 eV Total energy + Delta-G solvation = -3062.030321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.62867 -39.41547 -37.24923 -34.37823 -33.88994 -32.65021 -30.15016 -29.10733 -27.42141 -25.55771 -25.15876 -23.97564 -21.22478 -20.96721 -19.53905 -18.72263 -17.32595 -16.98850 -16.34266 -15.77696 -15.27724 -14.87721 -14.55357 -14.02936 -13.80046 -13.33093 -13.12759 -13.01092 -12.86015 -12.72065 -12.50994 -12.39040 -12.05280 -11.85851 -11.71215 -11.60168 -11.18731 -10.97005 -10.72264 -10.09521 -9.94589 -9.59529 -9.48709 -9.22159 -8.70404 -8.47468 -8.00861 -6.22167 -4.25029 1.22419 2.36155 2.76502 3.19357 3.27621 3.30628 3.38259 3.52445 4.29371 4.45491 4.75599 4.84110 4.96523 5.01099 5.03021 5.18248 5.46710 5.55266 5.60103 5.68881 5.70862 5.76360 5.80116 5.92777 5.95522 6.09072 6.12442 6.16905 6.20215 6.36014 6.36437 6.48418 6.53621 7.08490 7.15739 7.52440 8.15410 8.33669 8.49142 8.80937 9.38380 10.89820 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.006399 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.762083 B = 4374.818174 C = 5495.674759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.015 3.985 4 C -0.221 4.221 5 C -0.099 4.099 6 C -0.090 4.090 7 C -0.067 4.067 8 C 0.610 3.390 9 O -0.540 6.540 10 N -0.630 5.630 11 C 0.120 3.880 12 C -0.013 4.013 13 C -0.513 4.513 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.871 3.129 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.262 1.262 21 C 0.091 3.909 22 O -0.152 6.152 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.267 0.733 36 H 0.088 0.912 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -5.315 17.280 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.084 4.084 3 C -0.038 4.038 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.146 4.146 7 C -0.119 4.119 8 C 0.399 3.601 9 O -0.421 6.421 10 N -0.362 5.362 11 C -0.001 4.001 12 C -0.032 4.032 13 C -0.551 4.551 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.529 5.529 17 Si 0.698 3.302 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.031 4.031 22 O -0.048 6.048 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.169 0.831 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.719 -4.923 17.200 17.973 hybrid contribution 0.276 -1.014 0.438 1.138 sum -1.443 -5.937 17.638 18.666 Atomic orbital electron populations 1.21789 0.93630 1.02456 1.02900 1.20170 0.96641 0.87246 1.04375 1.22765 1.01549 0.95110 0.84376 1.21367 1.09146 0.94117 0.99429 1.20540 1.00690 0.96811 0.92148 1.20363 1.02222 0.94428 0.97636 1.22019 1.10293 0.85607 0.93969 1.16271 0.78636 0.84729 0.80470 1.90782 1.50238 1.25658 1.75451 1.50308 1.63266 1.19811 1.02861 1.23358 1.00156 0.96251 0.80304 1.21099 0.96404 0.91441 0.94305 1.20815 1.36454 1.02216 0.95584 0.90109 1.24984 0.94613 0.98484 0.94448 1.69892 1.44673 1.30156 1.08146 0.86923 0.80903 0.83442 0.78960 1.19880 1.21104 1.18701 1.24062 1.01578 0.89820 0.87629 1.84126 1.64344 1.21975 1.34332 0.91473 0.92165 0.91935 0.89662 0.88716 0.83099 0.91152 0.91846 0.89545 0.91223 0.89726 0.91725 0.92349 0.89408 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.15 0.37 -0.94 16 2 C -0.05 -0.45 6.47 -27.88 -0.18 -0.63 16 3 C 0.01 0.20 6.57 -35.41 -0.23 -0.03 16 4 C -0.22 -2.88 10.73 -39.88 -0.43 -3.31 16 5 C -0.10 -1.54 6.20 -104.43 -0.65 -2.19 16 6 C -0.09 -1.21 9.81 36.00 0.35 -0.86 16 7 C -0.07 -1.21 7.07 -36.80 -0.26 -1.47 16 8 C 0.61 12.41 8.02 -12.86 -0.10 12.30 16 9 O -0.54 -11.68 15.47 5.19 0.08 -11.60 16 10 N -0.63 -12.93 3.61 -179.99 -0.65 -13.58 16 11 C 0.12 2.43 8.39 -2.97 -0.02 2.41 16 12 C -0.01 -0.29 2.90 -90.84 -0.26 -0.55 16 13 C -0.51 -13.35 9.33 -34.44 -0.32 -13.67 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 15 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 17 Si 0.87 20.18 27.18 -169.99 -4.62 15.56 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -5.88 6.25 56.52 0.35 -5.52 16 21 C 0.09 1.89 6.79 -2.97 -0.02 1.87 16 22 O -0.15 -2.61 9.14 4.98 0.05 -2.56 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.33 6.45 -51.93 -0.33 0.99 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.67 8.09 -51.93 -0.42 1.24 16 34 H 0.06 1.47 6.57 -51.93 -0.34 1.12 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 37 H 0.06 1.24 7.47 -51.93 -0.39 0.85 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -30.22 313.67 -6.82 -37.03 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.32 Total: 0.46 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.86 Total: -5.06 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.12 Total: -38.55 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.13 Total: -14.17 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.62 Total: 15.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.22 -6.82 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds