Wall clock time and date at job start Mon Mar 30 2020 06:19:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.50704 * 109.47269 * 2 1
4 4 C 1.35132 * 125.61101 * 89.97853 * 3 2 1
5 5 C 1.40377 * 107.10835 * 179.78156 * 4 3 2
6 6 C 1.50694 * 126.64047 * 180.22295 * 5 4 3
7 7 C 1.36539 * 106.71045 * 0.34992 * 5 4 3
8 8 C 1.46650 * 125.98811 * 179.91077 * 7 5 4
9 9 O 1.21699 * 120.00116 * 359.71492 * 8 7 5
10 10 N 1.34778 * 120.00356 * 179.71466 * 8 7 5
11 11 C 1.47579 * 134.49701 * 180.02562 * 10 8 7
12 12 C 1.53947 * 86.11614 * 155.36008 * 11 10 8
13 13 C 1.50706 * 113.73809 * 137.95390 * 12 11 10
14 14 H 1.07995 * 120.00167 * 359.71966 * 13 12 11
15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11
16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 12
17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12
18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13
19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13
20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13
21 21 C 1.47585 * 134.48633 * 0.02562 * 10 8 7
22 22 O 1.33932 * 125.61725 * 269.97760 * 3 2 1
23 23 H 1.08998 * 109.47311 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46945 * 300.00010 * 1 2 3
25 25 H 1.09007 * 109.47178 * 59.99498 * 1 2 3
26 26 H 1.09003 * 109.47345 * 240.00267 * 2 1 3
27 27 H 1.09000 * 109.47584 * 119.99942 * 2 1 3
28 28 H 1.07993 * 126.44742 * 0.02562 * 4 3 2
29 29 H 1.08999 * 109.47604 * 270.14996 * 6 5 4
30 30 H 1.08997 * 109.47735 * 30.15168 * 6 5 4
31 31 H 1.08999 * 109.47342 * 150.15432 * 6 5 4
32 32 H 1.08997 * 113.76662 * 41.05329 * 11 10 8
33 33 H 1.09000 * 113.76483 * 269.66159 * 11 10 8
34 34 H 1.08994 * 113.74010 * 269.15100 * 12 11 10
35 35 H 0.97005 * 119.99656 * 180.02562 * 16 15 13
36 36 H 1.09000 * 113.77177 * 90.34376 * 21 10 8
37 37 H 1.08997 * 113.77427 * 318.93669 * 21 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2942 2.1628 1.0986
5 6 2.7430 3.4161 0.6531
6 6 3.1611 4.5798 1.5144
7 6 2.7244 3.3774 -0.7116
8 6 3.1119 4.4698 -1.6100
9 8 3.4876 5.5319 -1.1498
10 7 3.0519 4.2976 -2.9454
11 6 3.3545 5.1484 -4.1126
12 6 3.5682 3.8334 -4.8839
13 6 2.9795 3.8411 -6.2712
14 1 2.4621 4.7172 -6.6334
15 6 3.0970 2.7278 -7.0761
16 7 2.5828 2.7344 -8.2865
17 14 3.9851 1.2097 -6.4469
18 1 3.0138 0.3123 -5.7713
19 1 4.6102 0.4936 -7.5877
20 1 5.0375 1.6166 -5.4814
21 6 2.6571 3.1823 -3.8276
22 8 2.2927 2.1561 -1.0888
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 2.1833 1.8492 2.1260
29 1 2.2941 5.2058 1.7254
30 1 3.5772 4.2080 2.4507
31 1 3.9145 5.1677 0.9901
32 1 4.2605 5.7436 -3.9993
33 1 2.5028 5.7306 -4.4644
34 1 4.5967 3.4733 -4.8608
35 1 2.6651 1.9511 -8.8527
36 1 1.6006 3.1869 -4.0958
37 1 3.0065 2.2076 -3.4869
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598033251.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:19:20
Heat of formation + Delta-G solvation = -16.943204 kcal
Electronic energy + Delta-G solvation = -19821.753264 eV
Core-core repulsion = 16758.937829 eV
Total energy + Delta-G solvation = -3062.815435 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-43.78073 -41.03385 -38.87313 -35.32485 -34.93493 -34.66959 -31.75280 -30.23179
-28.76318 -27.11163 -26.89398 -25.00457 -22.43291 -22.28110 -20.98105 -20.12676
-19.23594 -18.54423 -17.58624 -17.26718 -16.64454 -16.39810 -15.76621 -15.35166
-15.12346 -14.88098 -14.63743 -14.13402 -14.07515 -13.95677 -13.69338 -13.54572
-13.49786 -13.36292 -13.00693 -12.80024 -12.50705 -12.39094 -11.96117 -11.86579
-11.69127 -11.36666 -11.00417 -10.72941 -10.66672 -9.88865 -9.39794 -8.30479
-6.37989 -0.03452 1.29536 1.37057 1.39890 1.48214 1.55402 1.93281
2.06373 2.34688 2.99633 3.34427 3.65251 3.77006 3.98167 4.18424
4.23408 4.30703 4.32848 4.38251 4.46887 4.50702 4.56486 4.67550
4.69660 4.74141 4.76897 4.85615 4.97017 5.01519 5.12592 5.18524
5.32184 5.32539 5.50686 5.56101 5.94565 6.24350 6.57443 6.69362
6.92990 7.29034 8.84969
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.018803 B = 0.006399 C = 0.005094
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1488.762083 B = 4374.818174 C = 5495.674759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.048 4.048
3 C 0.021 3.979
4 C -0.220 4.220
5 C -0.088 4.088
6 C -0.090 4.090
7 C -0.117 4.117
8 C 0.607 3.393
9 O -0.562 6.562
10 N -0.636 5.636
11 C 0.123 3.877
12 C -0.016 4.016
13 C -0.513 4.513
14 H 0.046 0.954
15 C 0.026 3.974
16 N -0.940 5.940
17 Si 0.931 3.069
18 H -0.259 1.259
19 H -0.285 1.285
20 H -0.248 1.248
21 C 0.105 3.895
22 O -0.174 6.174
23 H 0.089 0.911
24 H 0.066 0.934
25 H 0.039 0.961
26 H 0.084 0.916
27 H 0.129 0.871
28 H 0.190 0.810
29 H 0.078 0.922
30 H 0.096 0.904
31 H 0.062 0.938
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.067 0.933
35 H 0.269 0.731
36 H 0.083 0.917
37 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.666 -7.535 20.404 21.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.085 4.085
3 C -0.031 4.031
4 C -0.238 4.238
5 C -0.091 4.091
6 C -0.146 4.146
7 C -0.168 4.168
8 C 0.399 3.601
9 O -0.446 6.446
10 N -0.368 5.368
11 C 0.002 3.998
12 C -0.035 4.035
13 C -0.551 4.551
14 H 0.064 0.936
15 C -0.173 4.173
16 N -0.579 5.579
17 Si 0.754 3.246
18 H -0.184 1.184
19 H -0.211 1.211
20 H -0.172 1.172
21 C -0.017 4.017
22 O -0.071 6.071
23 H 0.108 0.892
24 H 0.085 0.915
25 H 0.059 0.941
26 H 0.103 0.897
27 H 0.147 0.853
28 H 0.207 0.793
29 H 0.096 0.904
30 H 0.114 0.886
31 H 0.081 0.919
32 H 0.099 0.901
33 H 0.102 0.898
34 H 0.085 0.915
35 H 0.078 0.922
36 H 0.101 0.899
37 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.519 -7.132 20.348 21.615
hybrid contribution 0.148 -0.297 -0.458 0.566
sum -1.371 -7.429 19.889 21.276
Atomic orbital electron populations
1.21791 0.92924 1.03730 1.02146 1.20454 0.97088 0.84871 1.06042
1.23722 0.99407 0.96246 0.83742 1.21767 1.08362 0.92615 1.01083
1.21001 0.98555 0.98182 0.91394 1.20420 1.01988 0.93810 0.98397
1.21684 1.14486 0.86187 0.94452 1.16583 0.77915 0.85327 0.80310
1.90753 1.51264 1.26814 1.75727 1.50255 1.63859 1.19510 1.03212
1.23272 1.00710 0.95631 0.80234 1.21006 0.96454 0.93374 0.92694
1.20959 1.35773 1.00987 0.97429 0.93585 1.25776 0.95440 1.01691
0.94436 1.70026 1.46775 1.31349 1.09754 0.85957 0.80258 0.79668
0.78684 1.18400 1.21093 1.17198 1.23783 1.00835 0.90269 0.86829
1.84085 1.65042 1.21935 1.36049 0.89223 0.91493 0.94138 0.89704
0.85314 0.79321 0.90352 0.88559 0.91867 0.90121 0.89786 0.91505
0.92212 0.89853 0.91035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16
2 C -0.05 -0.73 6.47 29.85 0.19 -0.54 16
3 C 0.02 0.51 6.57 24.97 0.16 0.68 16
4 C -0.22 -4.89 10.73 22.07 0.24 -4.65 16
5 C -0.09 -2.55 6.20 -19.74 -0.12 -2.68 16
6 C -0.09 -2.22 9.81 71.23 0.70 -1.53 16
7 C -0.12 -4.15 7.07 24.07 0.17 -3.98 16
8 C 0.61 24.76 8.02 86.44 0.69 25.45 16
9 O -0.56 -24.56 15.47 -4.35 -0.07 -24.63 16
10 N -0.64 -26.15 3.61 -841.57 -3.04 -29.19 16
11 C 0.12 5.03 8.39 86.48 0.73 5.75 16
12 C -0.02 -0.71 2.90 -10.88 -0.03 -0.74 16
13 C -0.51 -27.40 9.33 25.60 0.24 -27.17 16
14 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16
15 C 0.03 1.40 5.47 84.66 0.46 1.86 16
16 N -0.94 -55.66 13.96 21.45 0.30 -55.36 16
17 Si 0.93 41.20 27.18 68.60 1.86 43.06 16
18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
19 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16
20 H -0.25 -10.34 6.25 99.48 0.62 -9.71 16
21 C 0.11 4.32 6.79 86.48 0.59 4.91 16
22 O -0.17 -5.74 9.14 -5.10 -0.05 -5.78 16
23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
25 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16
26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
27 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16
28 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16
29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
31 H 0.06 1.89 6.45 -2.39 -0.02 1.87 16
32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16
33 H 0.08 3.41 8.09 -2.39 -0.02 3.39 16
34 H 0.07 2.97 6.57 -2.39 -0.02 2.96 16
35 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16
36 H 0.08 3.46 8.09 -2.39 -0.02 3.44 16
37 H 0.07 2.78 7.47 -2.39 -0.02 2.77 16
Total: -1.00 -67.03 313.67 4.72 -62.31
By element:
Atomic # 1 Polarization: 12.62 SS G_CDS: 0.97 Total: 13.60 kcal
Atomic # 6 Polarization: -8.74 SS G_CDS: 4.73 Total: -4.01 kcal
Atomic # 7 Polarization: -81.81 SS G_CDS: -2.74 Total: -84.55 kcal
Atomic # 8 Polarization: -30.30 SS G_CDS: -0.11 Total: -30.41 kcal
Atomic # 14 Polarization: 41.20 SS G_CDS: 1.86 Total: 43.06 kcal
Total: -67.03 4.72 -62.31 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598033251.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.367 kcal
(2) G-P(sol) polarization free energy of solvation -67.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds