Wall clock time and date at job start Mon Mar 30 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47269 * 2 1 4 4 C 1.35132 * 125.61101 * 89.97853 * 3 2 1 5 5 C 1.40377 * 107.10835 * 179.78156 * 4 3 2 6 6 C 1.50694 * 126.64047 * 180.22295 * 5 4 3 7 7 C 1.36539 * 106.71045 * 0.34992 * 5 4 3 8 8 C 1.46650 * 125.98811 * 179.91077 * 7 5 4 9 9 O 1.21699 * 120.00116 * 359.71492 * 8 7 5 10 10 N 1.34778 * 120.00356 * 179.71466 * 8 7 5 11 11 C 1.47579 * 134.49701 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11614 * 155.36008 * 11 10 8 13 13 C 1.50706 * 113.73809 * 137.95390 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.71966 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.47585 * 134.48633 * 0.02562 * 10 8 7 22 22 O 1.33932 * 125.61725 * 269.97760 * 3 2 1 23 23 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46945 * 300.00010 * 1 2 3 25 25 H 1.09007 * 109.47178 * 59.99498 * 1 2 3 26 26 H 1.09003 * 109.47345 * 240.00267 * 2 1 3 27 27 H 1.09000 * 109.47584 * 119.99942 * 2 1 3 28 28 H 1.07993 * 126.44742 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47604 * 270.14996 * 6 5 4 30 30 H 1.08997 * 109.47735 * 30.15168 * 6 5 4 31 31 H 1.08999 * 109.47342 * 150.15432 * 6 5 4 32 32 H 1.08997 * 113.76662 * 41.05329 * 11 10 8 33 33 H 1.09000 * 113.76483 * 269.66159 * 11 10 8 34 34 H 1.08994 * 113.74010 * 269.15100 * 12 11 10 35 35 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.77177 * 90.34376 * 21 10 8 37 37 H 1.08997 * 113.77427 * 318.93669 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2942 2.1628 1.0986 5 6 2.7430 3.4161 0.6531 6 6 3.1611 4.5798 1.5144 7 6 2.7244 3.3774 -0.7116 8 6 3.1119 4.4698 -1.6100 9 8 3.4876 5.5319 -1.1498 10 7 3.0519 4.2976 -2.9454 11 6 3.3545 5.1484 -4.1126 12 6 3.5682 3.8334 -4.8839 13 6 2.9795 3.8411 -6.2712 14 1 2.4621 4.7172 -6.6334 15 6 3.0970 2.7278 -7.0761 16 7 2.5828 2.7344 -8.2865 17 14 3.9851 1.2097 -6.4469 18 1 3.0138 0.3123 -5.7713 19 1 4.6102 0.4936 -7.5877 20 1 5.0375 1.6166 -5.4814 21 6 2.6571 3.1823 -3.8276 22 8 2.2927 2.1561 -1.0888 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1833 1.8492 2.1260 29 1 2.2941 5.2058 1.7254 30 1 3.5772 4.2080 2.4507 31 1 3.9145 5.1677 0.9901 32 1 4.2605 5.7436 -3.9993 33 1 2.5028 5.7306 -4.4644 34 1 4.5967 3.4733 -4.8608 35 1 2.6651 1.9511 -8.8527 36 1 1.6006 3.1869 -4.0958 37 1 3.0065 2.2076 -3.4869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:20 Heat of formation + Delta-G solvation = -16.943204 kcal Electronic energy + Delta-G solvation = -19821.753264 eV Core-core repulsion = 16758.937829 eV Total energy + Delta-G solvation = -3062.815435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.78073 -41.03385 -38.87313 -35.32485 -34.93493 -34.66959 -31.75280 -30.23179 -28.76318 -27.11163 -26.89398 -25.00457 -22.43291 -22.28110 -20.98105 -20.12676 -19.23594 -18.54423 -17.58624 -17.26718 -16.64454 -16.39810 -15.76621 -15.35166 -15.12346 -14.88098 -14.63743 -14.13402 -14.07515 -13.95677 -13.69338 -13.54572 -13.49786 -13.36292 -13.00693 -12.80024 -12.50705 -12.39094 -11.96117 -11.86579 -11.69127 -11.36666 -11.00417 -10.72941 -10.66672 -9.88865 -9.39794 -8.30479 -6.37989 -0.03452 1.29536 1.37057 1.39890 1.48214 1.55402 1.93281 2.06373 2.34688 2.99633 3.34427 3.65251 3.77006 3.98167 4.18424 4.23408 4.30703 4.32848 4.38251 4.46887 4.50702 4.56486 4.67550 4.69660 4.74141 4.76897 4.85615 4.97017 5.01519 5.12592 5.18524 5.32184 5.32539 5.50686 5.56101 5.94565 6.24350 6.57443 6.69362 6.92990 7.29034 8.84969 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.006399 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.762083 B = 4374.818174 C = 5495.674759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C 0.021 3.979 4 C -0.220 4.220 5 C -0.088 4.088 6 C -0.090 4.090 7 C -0.117 4.117 8 C 0.607 3.393 9 O -0.562 6.562 10 N -0.636 5.636 11 C 0.123 3.877 12 C -0.016 4.016 13 C -0.513 4.513 14 H 0.046 0.954 15 C 0.026 3.974 16 N -0.940 5.940 17 Si 0.931 3.069 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.248 1.248 21 C 0.105 3.895 22 O -0.174 6.174 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.190 0.810 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -7.535 20.404 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.031 4.031 4 C -0.238 4.238 5 C -0.091 4.091 6 C -0.146 4.146 7 C -0.168 4.168 8 C 0.399 3.601 9 O -0.446 6.446 10 N -0.368 5.368 11 C 0.002 3.998 12 C -0.035 4.035 13 C -0.551 4.551 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.579 5.579 17 Si 0.754 3.246 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.172 1.172 21 C -0.017 4.017 22 O -0.071 6.071 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.207 0.793 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.519 -7.132 20.348 21.615 hybrid contribution 0.148 -0.297 -0.458 0.566 sum -1.371 -7.429 19.889 21.276 Atomic orbital electron populations 1.21791 0.92924 1.03730 1.02146 1.20454 0.97088 0.84871 1.06042 1.23722 0.99407 0.96246 0.83742 1.21767 1.08362 0.92615 1.01083 1.21001 0.98555 0.98182 0.91394 1.20420 1.01988 0.93810 0.98397 1.21684 1.14486 0.86187 0.94452 1.16583 0.77915 0.85327 0.80310 1.90753 1.51264 1.26814 1.75727 1.50255 1.63859 1.19510 1.03212 1.23272 1.00710 0.95631 0.80234 1.21006 0.96454 0.93374 0.92694 1.20959 1.35773 1.00987 0.97429 0.93585 1.25776 0.95440 1.01691 0.94436 1.70026 1.46775 1.31349 1.09754 0.85957 0.80258 0.79668 0.78684 1.18400 1.21093 1.17198 1.23783 1.00835 0.90269 0.86829 1.84085 1.65042 1.21935 1.36049 0.89223 0.91493 0.94138 0.89704 0.85314 0.79321 0.90352 0.88559 0.91867 0.90121 0.89786 0.91505 0.92212 0.89853 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.05 -0.73 6.47 29.85 0.19 -0.54 16 3 C 0.02 0.51 6.57 24.97 0.16 0.68 16 4 C -0.22 -4.89 10.73 22.07 0.24 -4.65 16 5 C -0.09 -2.55 6.20 -19.74 -0.12 -2.68 16 6 C -0.09 -2.22 9.81 71.23 0.70 -1.53 16 7 C -0.12 -4.15 7.07 24.07 0.17 -3.98 16 8 C 0.61 24.76 8.02 86.44 0.69 25.45 16 9 O -0.56 -24.56 15.47 -4.35 -0.07 -24.63 16 10 N -0.64 -26.15 3.61 -841.57 -3.04 -29.19 16 11 C 0.12 5.03 8.39 86.48 0.73 5.75 16 12 C -0.02 -0.71 2.90 -10.88 -0.03 -0.74 16 13 C -0.51 -27.40 9.33 25.60 0.24 -27.17 16 14 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 15 C 0.03 1.40 5.47 84.66 0.46 1.86 16 16 N -0.94 -55.66 13.96 21.45 0.30 -55.36 16 17 Si 0.93 41.20 27.18 68.60 1.86 43.06 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.25 -10.34 6.25 99.48 0.62 -9.71 16 21 C 0.11 4.32 6.79 86.48 0.59 4.91 16 22 O -0.17 -5.74 9.14 -5.10 -0.05 -5.78 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.89 6.45 -2.39 -0.02 1.87 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 3.41 8.09 -2.39 -0.02 3.39 16 34 H 0.07 2.97 6.57 -2.39 -0.02 2.96 16 35 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 36 H 0.08 3.46 8.09 -2.39 -0.02 3.44 16 37 H 0.07 2.78 7.47 -2.39 -0.02 2.77 16 Total: -1.00 -67.03 313.67 4.72 -62.31 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.97 Total: 13.60 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.73 Total: -4.01 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.74 Total: -84.55 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.11 Total: -30.41 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.86 Total: 43.06 kcal Total: -67.03 4.72 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.367 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds