Wall clock time and date at job start Mon Mar 30 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.50696 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.31979 * 120.04673 * 90.00247 * 4 3 2 6 6 C 1.32216 * 120.07869 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.16477 * 359.97438 * 6 5 4 8 8 N 1.32183 * 120.09248 * 0.02562 * 7 6 5 9 9 C 1.32641 * 119.92001 * 0.02562 * 8 7 6 10 10 N 1.39411 * 120.07769 * 179.97438 * 9 8 7 11 11 C 1.34772 * 119.99985 * 359.97438 * 10 9 8 12 12 O 1.21276 * 120.00097 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99680 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47134 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47655 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99492 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00559 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47236 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47221 * 120.00109 * 19 17 15 22 22 H 1.48506 * 109.47162 * 239.99970 * 19 17 15 23 23 H 1.09008 * 109.46950 * 59.99663 * 1 2 3 24 24 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47149 * 300.00270 * 1 2 3 26 26 H 1.09003 * 109.46774 * 239.99975 * 2 1 3 27 27 H 1.08999 * 109.46840 * 120.00577 * 2 1 3 28 28 H 1.08998 * 109.47167 * 59.99741 * 3 2 1 29 29 H 1.08995 * 109.47131 * 299.99973 * 3 2 1 30 30 H 1.08002 * 119.92289 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.95859 * 179.74792 * 7 6 5 32 32 H 0.96995 * 119.99475 * 180.02562 * 10 9 8 33 33 H 1.08999 * 109.47439 * 300.00099 * 13 11 10 34 34 H 1.08999 * 109.47326 * 60.00028 * 13 11 10 35 35 H 1.09001 * 109.47255 * 300.00073 * 14 13 11 36 36 H 1.08999 * 109.47278 * 59.99648 * 14 13 11 37 37 H 0.96999 * 119.99624 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2084 1.4421 -1.1415 6 6 5.5305 1.4415 -1.1417 7 6 6.2255 1.4415 0.0536 8 7 5.5699 1.4417 1.2014 9 6 4.2435 1.4413 1.2057 10 7 3.5487 1.4410 2.4143 11 6 4.2247 1.4405 3.5802 12 8 5.4375 1.4409 3.5780 13 6 3.4736 1.4396 4.8867 14 6 4.4699 1.4398 6.0478 15 6 3.7189 1.4382 7.3543 16 1 2.6389 1.4367 7.3563 17 6 4.4105 1.4377 8.5471 18 7 5.7256 1.4390 8.5447 19 14 3.4795 1.4364 10.1665 20 1 2.0190 1.4368 9.8979 21 1 3.8400 0.2235 10.9438 22 1 3.8394 2.6485 10.9454 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9563 -0.8899 30 1 6.0692 1.4418 -2.0778 31 1 7.3054 1.4369 0.0496 32 1 2.5787 1.4403 2.4161 33 1 2.8467 2.3293 4.9461 34 1 2.8473 0.5494 4.9451 35 1 5.0971 0.5503 5.9886 36 1 5.0959 2.3302 5.9892 37 1 6.2121 1.4390 9.3838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598878505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:47 Heat of formation + Delta-G solvation = 0.383410 kcal Electronic energy + Delta-G solvation = -19191.028006 eV Core-core repulsion = 16161.256661 eV Total energy + Delta-G solvation = -3029.771346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41590 -39.12198 -36.00559 -35.02827 -33.52450 -33.28930 -31.29488 -30.35446 -27.49573 -26.12147 -24.30034 -23.32983 -21.66810 -21.47683 -20.03546 -18.21713 -17.42593 -16.54581 -16.24665 -15.59709 -15.43786 -15.16403 -14.63555 -14.54522 -14.42079 -13.67990 -13.43289 -13.14183 -12.60114 -12.36200 -12.23284 -11.80079 -11.59713 -11.43853 -11.30661 -11.21818 -10.97363 -10.94801 -10.61676 -10.36646 -10.03255 -9.77200 -9.58220 -9.14351 -8.66780 -8.37599 -8.30110 -5.99557 -4.04463 0.76335 1.19831 2.92840 3.07738 3.30707 3.38038 3.40978 3.78841 3.98366 4.27926 4.31271 4.45486 4.73563 4.80024 4.82395 5.07178 5.13344 5.32051 5.35717 5.39654 5.45040 5.51565 5.55972 5.80825 5.91374 6.01185 6.09314 6.09940 6.11555 6.54910 6.75490 7.16653 7.48950 7.69917 7.79043 7.94053 8.01782 8.32421 8.58276 9.03641 9.59528 11.11386 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.004174 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.145971 B = 6707.285729 C = 7731.208504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.064 4.064 4 C 0.040 3.960 5 N -0.413 5.413 6 C 0.000 4.000 7 C 0.083 3.917 8 N -0.433 5.433 9 C 0.330 3.670 10 N -0.663 5.663 11 C 0.495 3.505 12 O -0.462 6.462 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.416 0.584 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -0.876 -19.849 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.103 4.103 4 C -0.107 4.107 5 N -0.127 5.127 6 C -0.161 4.161 7 C -0.078 4.078 8 N -0.153 5.153 9 C 0.094 3.906 10 N -0.312 5.312 11 C 0.283 3.717 12 O -0.328 6.328 13 C -0.167 4.167 14 C -0.002 4.002 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.187 0.813 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.961 -0.870 -19.560 20.780 hybrid contribution -0.712 0.014 0.848 1.107 sum -7.672 -0.856 -18.712 20.242 Atomic orbital electron populations 1.21774 0.94994 1.02047 1.02106 1.21515 0.96203 0.95319 1.02800 1.20487 0.87587 0.98420 1.03814 1.21656 0.97627 1.03529 0.87852 1.68105 1.09101 1.07686 1.27856 1.23501 0.90561 1.02237 0.99771 1.23767 1.01919 0.94329 0.87800 1.68622 1.05997 1.11634 1.29024 1.19469 0.89889 0.94106 0.87101 1.44294 1.10623 1.72720 1.03545 1.22058 0.89269 0.75365 0.85053 1.90786 1.13698 1.42010 1.86330 1.21939 1.00921 1.02899 0.90949 1.18934 0.93116 0.98823 0.89291 1.21217 0.92974 1.51581 0.90853 0.92458 1.25023 0.94823 0.95217 0.99279 1.70009 1.06015 1.50050 1.26617 0.86526 0.79974 0.77618 0.83781 1.19719 1.20991 1.20996 0.92518 0.92426 0.92315 0.91397 0.91789 0.90414 0.89256 0.81593 0.81304 0.74608 0.89784 0.89775 0.95664 0.95659 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 3 C -0.06 -0.58 5.09 -27.89 -0.14 -0.73 16 4 C 0.04 0.51 6.06 -82.18 -0.50 0.01 16 5 N -0.41 -5.19 10.41 -9.13 -0.10 -5.29 16 6 C 0.00 -0.01 11.21 -17.38 -0.19 -0.20 16 7 C 0.08 1.07 11.22 -17.39 -0.20 0.88 16 8 N -0.43 -7.45 8.05 -12.17 -0.10 -7.55 16 9 C 0.33 5.04 7.41 -154.40 -1.14 3.90 16 10 N -0.66 -9.75 5.30 -11.33 -0.06 -9.81 16 11 C 0.49 9.53 7.79 -10.99 -0.09 9.45 16 12 O -0.46 -10.99 14.25 5.56 0.08 -10.91 16 13 C -0.13 -2.48 5.64 -27.88 -0.16 -2.64 16 14 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 15 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.42 4.44 6.70 -40.82 -0.27 4.17 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 318.00 15.07 4.79 4.79 Total: -1.00 -35.69 318.00 -7.63 -43.32 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.22 Total: -0.74 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.74 Total: -3.76 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.48 Total: -49.10 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.69 -7.63 -43.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598878505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.701 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds