Wall clock time and date at job start Mon Mar 30 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.50696 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.31979 * 120.04673 * 90.00247 * 4 3 2 6 6 C 1.32216 * 120.07869 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.16477 * 359.97438 * 6 5 4 8 8 N 1.32183 * 120.09248 * 0.02562 * 7 6 5 9 9 C 1.32641 * 119.92001 * 0.02562 * 8 7 6 10 10 N 1.39411 * 120.07769 * 179.97438 * 9 8 7 11 11 C 1.34772 * 119.99985 * 359.97438 * 10 9 8 12 12 O 1.21276 * 120.00097 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99680 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47134 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47655 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99492 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00559 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47236 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47221 * 120.00109 * 19 17 15 22 22 H 1.48506 * 109.47162 * 239.99970 * 19 17 15 23 23 H 1.09008 * 109.46950 * 59.99663 * 1 2 3 24 24 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47149 * 300.00270 * 1 2 3 26 26 H 1.09003 * 109.46774 * 239.99975 * 2 1 3 27 27 H 1.08999 * 109.46840 * 120.00577 * 2 1 3 28 28 H 1.08998 * 109.47167 * 59.99741 * 3 2 1 29 29 H 1.08995 * 109.47131 * 299.99973 * 3 2 1 30 30 H 1.08002 * 119.92289 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.95859 * 179.74792 * 7 6 5 32 32 H 0.96995 * 119.99475 * 180.02562 * 10 9 8 33 33 H 1.08999 * 109.47439 * 300.00099 * 13 11 10 34 34 H 1.08999 * 109.47326 * 60.00028 * 13 11 10 35 35 H 1.09001 * 109.47255 * 300.00073 * 14 13 11 36 36 H 1.08999 * 109.47278 * 59.99648 * 14 13 11 37 37 H 0.96999 * 119.99624 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2084 1.4421 -1.1415 6 6 5.5305 1.4415 -1.1417 7 6 6.2255 1.4415 0.0536 8 7 5.5699 1.4417 1.2014 9 6 4.2435 1.4413 1.2057 10 7 3.5487 1.4410 2.4143 11 6 4.2247 1.4405 3.5802 12 8 5.4375 1.4409 3.5780 13 6 3.4736 1.4396 4.8867 14 6 4.4699 1.4398 6.0478 15 6 3.7189 1.4382 7.3543 16 1 2.6389 1.4367 7.3563 17 6 4.4105 1.4377 8.5471 18 7 5.7256 1.4390 8.5447 19 14 3.4795 1.4364 10.1665 20 1 2.0190 1.4368 9.8979 21 1 3.8400 0.2235 10.9438 22 1 3.8394 2.6485 10.9454 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9563 -0.8899 30 1 6.0692 1.4418 -2.0778 31 1 7.3054 1.4369 0.0496 32 1 2.5787 1.4403 2.4161 33 1 2.8467 2.3293 4.9461 34 1 2.8473 0.5494 4.9451 35 1 5.0971 0.5503 5.9886 36 1 5.0959 2.3302 5.9892 37 1 6.2121 1.4390 9.3838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598878505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:47 Heat of formation + Delta-G solvation = -24.125988 kcal Electronic energy + Delta-G solvation = -19192.090814 eV Core-core repulsion = 16161.256661 eV Total energy + Delta-G solvation = -3030.834153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49066 -40.53650 -36.92716 -36.22716 -35.54206 -34.29502 -33.06809 -31.53314 -28.34071 -27.90723 -25.66151 -24.24063 -23.41732 -22.18037 -21.47360 -19.46658 -18.84507 -18.29168 -17.11263 -17.01134 -16.89714 -16.45365 -15.86276 -15.83129 -15.55005 -15.00893 -14.41049 -14.30090 -14.21336 -13.88375 -13.28552 -12.95736 -12.87546 -12.62446 -12.50340 -12.45346 -12.41332 -12.16293 -11.94176 -11.64905 -11.59189 -11.47485 -11.29170 -11.07150 -10.57528 -9.84668 -9.39236 -8.17920 -6.31959 -0.24820 0.15515 1.43373 1.44581 1.57779 1.65372 1.75024 2.43376 2.76005 3.13484 3.15829 3.22567 3.35324 3.88284 4.03198 4.09655 4.15167 4.23279 4.36068 4.47620 4.51948 4.66598 4.71090 4.86083 4.96944 5.00137 5.08457 5.26024 5.30506 5.46959 5.48775 5.52435 5.60788 5.84579 6.02200 6.16321 6.44388 6.84939 6.87577 7.22402 7.38650 8.95043 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.004174 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.145971 B = 6707.285729 C = 7731.208504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.064 4.064 4 C 0.054 3.946 5 N -0.426 5.426 6 C 0.021 3.979 7 C 0.066 3.934 8 N -0.484 5.484 9 C 0.298 3.702 10 N -0.644 5.644 11 C 0.501 3.499 12 O -0.520 6.520 13 C -0.115 4.115 14 C 0.041 3.959 15 C -0.540 4.540 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.974 3.026 20 H -0.250 1.250 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.209 0.791 31 H 0.191 0.809 32 H 0.435 0.565 33 H 0.113 0.887 34 H 0.113 0.887 35 H -0.018 1.018 36 H -0.017 1.017 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -0.781 -20.999 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.092 4.092 5 N -0.140 5.140 6 C -0.139 4.139 7 C -0.094 4.094 8 N -0.205 5.205 9 C 0.063 3.937 10 N -0.294 5.294 11 C 0.289 3.711 12 O -0.392 6.392 13 C -0.154 4.154 14 C 0.003 3.997 15 C -0.578 4.578 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.174 1.174 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.225 0.775 31 H 0.208 0.792 32 H 0.277 0.723 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.867 -0.777 -20.770 23.008 hybrid contribution 0.242 -0.021 1.028 1.056 sum -9.626 -0.798 -19.742 21.978 Atomic orbital electron populations 1.21757 0.93419 1.02478 1.02956 1.21468 0.97470 0.94513 1.01943 1.20647 0.85132 0.99206 1.05253 1.22092 0.99150 1.01256 0.86723 1.68274 1.09783 1.08439 1.27537 1.24148 0.90268 0.98842 1.00682 1.24222 1.03111 0.94638 0.87440 1.68473 1.07638 1.12714 1.31664 1.19656 0.89813 0.96495 0.87704 1.43780 1.11331 1.71911 1.02418 1.21876 0.88453 0.74579 0.86208 1.90768 1.16008 1.45142 1.87264 1.21700 0.99391 1.05651 0.88678 1.18710 0.93703 0.94813 0.92454 1.21729 0.94132 1.50600 0.91352 0.90216 1.26135 0.95668 0.94661 1.03990 1.70192 1.08315 1.51576 1.27784 0.85272 0.79431 0.77434 0.78090 1.17351 1.20784 1.20793 0.91732 0.92250 0.91420 0.92281 0.92707 0.88707 0.88062 0.77473 0.79206 0.72329 0.86864 0.86895 0.99918 0.99891 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 3 C -0.06 -1.00 5.09 29.85 0.15 -0.85 16 4 C 0.05 1.27 6.06 42.76 0.26 1.52 16 5 N -0.43 -9.81 10.41 -182.81 -1.90 -11.72 16 6 C 0.02 0.41 11.21 84.64 0.95 1.36 16 7 C 0.07 1.68 11.22 84.65 0.95 2.63 16 8 N -0.48 -17.03 8.05 -192.41 -1.55 -18.57 16 9 C 0.30 9.01 7.41 132.86 0.98 9.99 16 10 N -0.64 -18.54 5.30 -308.14 -1.63 -20.17 16 11 C 0.50 19.66 7.79 87.66 0.68 20.34 16 12 O -0.52 -26.20 14.25 -3.02 -0.04 -26.25 16 13 C -0.11 -4.42 5.64 29.85 0.17 -4.25 16 14 C 0.04 2.25 4.26 29.85 0.13 2.37 16 15 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 16 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 18 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 19 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 20 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.15 6.56 -2.39 -0.02 1.14 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.43 8.43 6.70 -92.71 -0.62 7.81 16 33 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 35 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 36 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 37 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.17 318.00 3.49 -78.68 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.45 Total: 10.53 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.86 Total: 0.81 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.80 Total: -109.65 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -82.17 3.49 -78.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598878505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.553 kcal (2) G-P(sol) polarization free energy of solvation -82.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds