Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.47071 * 136.05157 * 359.62556 * 7 5 4 9 9 C 1.53762 * 87.88358 * 152.97035 * 8 7 5 10 10 C 1.50698 * 114.27040 * 139.79574 * 9 8 7 11 11 H 1.07999 * 119.99623 * 266.47690 * 10 9 8 12 12 C 1.37870 * 120.00348 * 86.46609 * 10 9 8 13 13 N 1.31516 * 120.00101 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00116 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46969 * 90.00208 * 14 12 10 16 16 H 1.48492 * 109.47308 * 210.00157 * 14 12 10 17 17 H 1.48498 * 109.46991 * 330.00330 * 14 12 10 18 18 C 1.47065 * 136.06111 * 180.02562 * 7 5 4 19 19 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 20 20 C 1.34517 * 125.78666 * 239.99626 * 19 2 1 21 21 C 1.41378 * 106.83951 * 179.97438 * 20 19 2 22 22 C 1.34511 * 106.84277 * 0.02562 * 21 20 19 23 23 O 1.34296 * 125.79313 * 59.69331 * 19 2 1 24 24 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 26 26 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 27 27 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 28 28 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 29 29 H 1.09001 * 113.46536 * 267.69429 * 8 7 5 30 30 H 1.08993 * 113.47241 * 38.14077 * 8 7 5 31 31 H 1.09002 * 114.38613 * 272.67249 * 9 8 7 32 32 H 0.97000 * 120.00007 * 179.97438 * 13 12 10 33 33 H 1.08997 * 113.46365 * 321.86138 * 18 7 5 34 34 H 1.08999 * 113.46854 * 92.24224 * 18 7 5 35 35 H 1.08005 * 126.58240 * 0.03914 * 20 19 2 36 36 H 1.08008 * 126.58067 * 179.97438 * 21 20 19 37 37 H 1.08003 * 125.79277 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 2.7216 -1.5462 -4.2363 9 6 1.8889 -1.4086 -5.5216 10 6 2.6697 -1.6268 -6.7919 11 1 3.1031 -0.7845 -7.3107 12 6 2.8310 -2.9016 -7.2916 13 7 2.3031 -3.9272 -6.6600 14 14 3.7996 -3.1720 -8.8658 15 1 5.2311 -3.3882 -8.5353 16 1 3.2697 -4.3646 -9.5744 17 1 3.6680 -1.9783 -9.7392 18 6 1.7928 0.0604 -5.0863 19 6 2.0322 -0.7104 1.2305 20 6 2.8089 -0.1720 2.1878 21 6 3.0376 -1.1847 3.1474 22 6 2.3876 -2.2816 2.7189 23 8 1.7757 -1.9868 1.5602 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.1263 -0.7996 -1.2055 28 1 1.6053 -1.7198 -1.2951 29 1 3.7838 -1.3520 -4.3846 30 1 2.5336 -2.4719 -3.6925 31 1 0.9395 -1.9438 -5.5022 32 1 2.4163 -4.8241 -7.0118 33 1 0.8134 0.5035 -5.2667 34 1 2.6099 0.6785 -5.4582 35 1 3.1846 0.8402 2.2181 36 1 3.6228 -1.0951 4.0507 37 1 2.3583 -3.2360 3.2236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600097825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = -11.316451 kcal Electronic energy + Delta-G solvation = -19291.695976 eV Core-core repulsion = 16229.124535 eV Total energy + Delta-G solvation = -3062.571441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.49995 -41.18114 -39.06999 -36.04359 -34.64533 -33.82498 -31.47514 -29.71636 -28.75744 -26.79639 -26.57750 -23.96212 -22.66963 -22.09463 -20.86342 -19.67952 -18.77443 -18.33796 -17.57647 -17.00725 -16.77786 -16.64927 -16.33970 -15.54319 -15.38248 -14.84788 -14.27642 -14.02830 -13.89727 -13.69973 -13.49408 -13.39122 -13.24861 -13.11072 -12.76252 -12.60952 -12.41963 -12.31019 -12.15874 -12.01453 -11.36601 -11.05190 -10.82449 -10.68701 -10.50282 -9.53732 -9.37018 -8.16124 -6.27386 0.81784 1.48008 1.50316 1.59437 1.62401 1.72395 1.99481 2.16536 2.47087 3.14156 3.43082 3.70469 3.89753 3.94502 4.16090 4.25742 4.30637 4.35700 4.40533 4.54649 4.60317 4.65253 4.72689 4.81302 4.89115 4.91895 4.97385 5.02920 5.08807 5.11758 5.18328 5.35550 5.60258 5.64417 5.82070 6.23906 6.25378 6.81556 6.91999 7.16478 7.42983 8.93844 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.003921 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.006532 B = 7140.100555 C = 7710.360873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.014 3.986 3 H 0.106 0.894 4 C -0.121 4.121 5 C 0.532 3.468 6 O -0.584 6.584 7 N -0.646 5.646 8 C 0.112 3.888 9 C 0.021 3.979 10 C -0.529 4.529 11 H 0.067 0.933 12 C 0.022 3.978 13 N -0.919 5.919 14 Si 0.958 3.042 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.106 3.894 19 C -0.020 4.020 20 C -0.217 4.217 21 C -0.225 4.225 22 C -0.046 4.046 23 O -0.192 6.192 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 2.958 16.354 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.004 4.004 3 H 0.124 0.876 4 C -0.161 4.161 5 C 0.324 3.676 6 O -0.466 6.466 7 N -0.380 5.380 8 C -0.011 4.011 9 C 0.002 3.998 10 C -0.567 4.567 11 H 0.085 0.915 12 C -0.179 4.179 13 N -0.557 5.557 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.017 4.017 19 C -0.070 4.070 20 C -0.236 4.236 21 C -0.243 4.243 22 C -0.113 4.113 23 O -0.088 6.088 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.685 3.181 16.447 16.836 hybrid contribution 0.508 -0.315 -0.710 0.929 sum 2.193 2.866 15.736 16.145 Atomic orbital electron populations 1.21894 0.93456 1.02082 1.03033 1.19405 0.96908 0.97805 0.86306 0.87557 1.21631 1.03762 1.00088 0.90601 1.20585 0.78865 0.84756 0.83436 1.90592 1.43147 1.26490 1.86374 1.50045 1.54551 1.28245 1.05121 1.23410 0.97066 0.86585 0.94027 1.20280 0.95774 0.90731 0.92996 1.21223 1.33704 0.93229 1.08521 0.91496 1.25758 0.96185 0.95894 1.00033 1.70060 1.45213 0.99412 1.41018 0.85547 0.78831 0.77663 0.79570 1.19843 1.21321 1.19105 1.23208 1.00496 0.99351 0.78624 1.22405 1.02403 0.83002 0.99147 1.21923 1.03608 1.02218 0.95893 1.22163 1.06036 0.93181 1.02968 1.24813 0.98042 1.02258 0.86200 1.84011 1.59739 1.28387 1.36689 0.92815 0.91346 0.91688 0.87669 0.88530 0.89979 0.92236 0.94318 0.92656 0.92533 0.89784 0.82368 0.81207 0.74877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.92 71.98 0.64 -3.39 16 2 C 0.01 0.39 2.44 -11.54 -0.03 0.36 16 3 H 0.11 2.81 7.91 -2.39 -0.02 2.79 16 4 C -0.12 -3.58 4.98 29.85 0.15 -3.43 16 5 C 0.53 19.84 7.80 87.66 0.68 20.53 16 6 O -0.58 -24.28 14.74 -3.02 -0.04 -24.33 16 7 N -0.65 -25.72 3.69 -857.68 -3.16 -28.88 16 8 C 0.11 4.62 8.00 83.27 0.67 5.28 16 9 C 0.02 1.01 3.79 -11.11 -0.04 0.97 16 10 C -0.53 -26.65 8.83 25.60 0.23 -26.42 16 11 H 0.07 3.26 7.81 -2.91 -0.02 3.23 16 12 C 0.02 1.11 5.46 84.65 0.46 1.57 16 13 N -0.92 -50.13 13.26 21.44 0.28 -49.84 16 14 Si 0.96 40.52 29.54 68.60 2.03 42.54 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 16 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 C 0.11 4.36 8.17 83.19 0.68 5.04 16 19 C -0.02 -0.49 5.83 24.83 0.14 -0.35 16 20 C -0.22 -4.77 10.78 22.19 0.24 -4.53 16 21 C -0.22 -4.16 10.91 22.19 0.24 -3.92 16 22 C -0.05 -0.86 12.09 66.97 0.81 -0.05 16 23 O -0.19 -4.80 10.65 -2.43 -0.03 -4.83 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.06 2.08 5.95 -2.39 -0.01 2.06 16 27 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -60.51 318.52 5.00 -55.51 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.05 Total: 18.18 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.87 Total: -8.35 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.88 Total: -78.73 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.07 Total: -29.16 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -60.51 5.00 -55.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600097825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.193 kcal (2) G-P(sol) polarization free energy of solvation -60.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds