Wall clock time and date at job start Mon Mar 30 2020 07:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.92436 * 2 1 4 4 C 1.38948 * 120.06269 * 180.02562 * 3 2 1 5 5 N 1.39671 * 120.04041 * 179.97438 * 4 3 2 6 6 C 1.38802 * 119.91935 * 359.69534 * 4 3 2 7 7 C 1.38715 * 119.85587 * 0.57887 * 6 4 3 8 8 N 1.39941 * 120.03092 * 179.69853 * 7 6 4 9 9 C 1.34784 * 120.00046 * 326.52732 * 8 7 6 10 10 O 1.21579 * 119.99694 * 354.68382 * 9 8 7 11 11 N 1.34779 * 119.99838 * 174.69022 * 9 8 7 12 12 C 1.46497 * 119.99820 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47485 * 34.99530 * 12 11 9 14 14 C 1.53008 * 109.46744 * 274.99851 * 12 11 9 15 15 C 1.50696 * 109.47311 * 155.00021 * 12 11 9 16 16 H 1.08002 * 120.00005 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00175 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99941 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47516 * 89.99465 * 19 17 15 21 21 H 1.48504 * 109.47203 * 209.99913 * 19 17 15 22 22 H 1.48504 * 109.46707 * 329.99406 * 19 17 15 23 23 C 1.38142 * 119.92851 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47417 * 269.98115 * 1 2 3 25 25 H 1.08998 * 109.47264 * 29.97950 * 1 2 3 26 26 H 1.09003 * 109.46832 * 149.98006 * 1 2 3 27 27 H 1.08004 * 119.96944 * 0.02562 * 3 2 1 28 28 H 0.97004 * 120.00213 * 0.02562 * 5 4 3 29 29 H 0.96992 * 119.99850 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.07179 * 180.27407 * 6 4 3 31 31 H 0.97001 * 120.00540 * 146.79891 * 8 7 6 32 32 H 0.96998 * 119.99946 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46878 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.47037 * 299.99551 * 14 12 11 35 35 H 1.08996 * 109.47337 * 60.00044 * 14 12 11 36 36 H 0.97007 * 120.00207 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.96199 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1975 0.0000 4 6 3.5857 1.2008 -0.0005 5 7 4.2820 2.4116 -0.0011 6 6 4.2810 -0.0005 0.0053 7 6 3.5856 -1.2008 -0.0005 8 7 4.2829 -2.4141 -0.0010 9 6 5.4653 -2.5116 -0.6405 10 8 5.8801 -1.5764 -1.2973 11 7 6.1878 -3.6460 -0.5519 12 6 7.4727 -3.7522 -1.2475 13 1 7.9719 -2.7832 -1.2388 14 6 7.2348 -4.1902 -2.6941 15 6 8.3387 -4.7696 -0.5505 16 1 7.9691 -5.2853 0.3235 17 6 9.6033 -5.0414 -1.0280 18 7 10.0536 -4.4131 -2.0919 19 14 10.6770 -6.3022 -0.1636 20 1 10.4362 -7.6442 -0.7519 21 1 12.1060 -5.9359 -0.3345 22 1 10.3424 -6.3286 1.2830 23 6 2.1962 -1.1972 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6545 2.1318 0.0004 28 1 3.7956 3.2509 -0.0007 29 1 5.2519 2.4132 -0.0011 30 1 5.3610 -0.0008 0.0094 31 1 3.9134 -3.1861 0.4556 32 1 5.8570 -4.3920 -0.0277 33 1 8.1909 -4.2697 -3.2116 34 1 6.7358 -5.1592 -2.7029 35 1 6.6085 -3.4543 -3.1983 36 1 10.9434 -4.6041 -2.4277 37 1 1.6544 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601568192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:31 Heat of formation + Delta-G solvation = -12.287660 kcal Electronic energy + Delta-G solvation = -19265.769971 eV Core-core repulsion = 16235.449166 eV Total energy + Delta-G solvation = -3030.320804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13570 -38.59971 -35.42485 -34.71724 -34.01306 -32.45657 -30.75112 -28.91329 -27.90768 -26.72227 -25.24605 -22.68915 -21.54322 -20.65540 -19.70964 -18.20167 -17.21726 -16.56599 -15.99000 -15.81898 -15.20733 -14.79536 -14.57790 -14.07064 -13.78991 -13.65748 -13.28216 -12.83742 -12.50294 -12.38617 -12.13705 -11.78757 -11.47357 -11.31011 -11.09897 -11.00887 -10.80094 -10.58609 -10.30279 -10.23027 -9.47541 -9.35354 -9.03282 -8.56586 -8.02957 -7.70947 -7.32444 -6.12505 -4.21651 1.65138 1.81050 3.23857 3.24625 3.31695 3.35337 3.77513 3.99912 4.21419 4.32933 4.93675 5.00751 5.20134 5.25957 5.40381 5.50397 5.57611 5.74087 5.84476 5.91504 6.03217 6.49716 6.63461 6.70432 6.77662 6.83985 6.99676 7.15325 7.26223 7.29880 7.48516 7.62909 7.66497 7.85518 7.88474 8.02441 8.15960 8.74325 8.87604 9.27831 9.47423 10.93552 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.003921 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.825025 B = 7139.814147 C = 7455.964175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.025 4.025 3 C -0.226 4.226 4 C 0.235 3.765 5 N -0.878 5.878 6 C -0.204 4.204 7 C 0.230 3.770 8 N -0.696 5.696 9 C 0.692 3.308 10 O -0.580 6.580 11 N -0.720 5.720 12 C 0.280 3.720 13 H 0.049 0.951 14 C -0.148 4.148 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.214 4.214 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.394 0.606 29 H 0.399 0.601 30 H 0.136 0.864 31 H 0.402 0.598 32 H 0.386 0.614 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 7.759 5.570 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.027 4.027 3 C -0.249 4.249 4 C 0.130 3.870 5 N -0.417 5.417 6 C -0.229 4.229 7 C 0.133 3.867 8 N -0.344 5.344 9 C 0.392 3.608 10 O -0.457 6.457 11 N -0.371 5.371 12 C 0.178 3.822 13 H 0.067 0.933 14 C -0.207 4.207 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.237 4.237 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.222 0.778 29 H 0.227 0.773 30 H 0.154 0.846 31 H 0.237 0.763 32 H 0.218 0.782 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.950 8.504 4.815 17.861 hybrid contribution 0.536 -1.154 0.802 1.504 sum -14.414 7.349 5.617 17.127 Atomic orbital electron populations 1.20753 0.91480 1.02482 1.02013 1.19264 0.95181 0.92044 0.96195 1.20259 0.91799 0.97671 1.15220 1.17531 0.90954 0.86199 0.92346 1.42431 1.09080 1.04819 1.85371 1.20588 1.00882 0.89661 1.11767 1.17172 0.90034 0.84847 0.94654 1.42899 1.21994 1.12196 1.57265 1.16173 0.79906 0.84588 0.80099 1.90885 1.70772 1.38768 1.45287 1.45868 1.23385 1.14043 1.53809 1.18674 0.76965 0.98000 0.88513 0.93309 1.22109 1.02040 0.97351 0.99210 1.21211 0.99679 1.23268 1.13045 0.92066 1.24881 0.97568 0.96281 0.94972 1.69907 1.18201 1.41388 1.22559 0.86434 0.79554 0.81201 0.79809 1.20545 1.21066 1.19864 1.20421 0.91832 0.97885 1.13523 0.91337 0.91797 0.91654 0.86804 0.77806 0.77275 0.84631 0.76325 0.78200 0.89122 0.95524 0.96572 0.92556 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.03 -0.32 5.87 -104.68 -0.61 -0.93 16 3 C -0.23 -2.87 9.54 -39.34 -0.38 -3.24 16 4 C 0.23 3.35 6.75 -83.81 -0.57 2.78 16 5 N -0.88 -9.79 9.09 32.40 0.29 -9.50 16 6 C -0.20 -3.48 8.50 -39.20 -0.33 -3.81 16 7 C 0.23 3.75 6.27 -83.72 -0.53 3.23 16 8 N -0.70 -11.34 5.35 -14.24 -0.08 -11.42 16 9 C 0.69 14.47 8.26 -86.91 -0.72 13.75 16 10 O -0.58 -14.36 13.70 5.30 0.07 -14.29 16 11 N -0.72 -15.20 5.07 -59.81 -0.30 -15.50 16 12 C 0.28 7.20 2.56 -69.08 -0.18 7.02 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 15 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.91 11.32 55.43 0.63 -24.28 16 19 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.21 -2.92 9.61 -39.36 -0.38 -3.30 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.11 1.18 8.06 -52.48 -0.42 0.75 16 28 H 0.39 3.30 8.84 -40.82 -0.36 2.94 16 29 H 0.40 4.29 8.84 -40.82 -0.36 3.93 16 30 H 0.14 2.65 6.42 -52.49 -0.34 2.31 16 31 H 0.40 5.08 8.83 -40.82 -0.36 4.72 16 32 H 0.39 6.94 8.56 -40.82 -0.35 6.59 16 33 H 0.09 2.47 6.07 -51.92 -0.32 2.16 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -31.97 313.96 -8.02 -39.99 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -4.97 Total: 15.96 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -3.38 Total: -1.28 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.54 Total: -60.70 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.97 -8.02 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601568192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.705 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds