Wall clock time and date at job start Mon Mar 30 2020 07:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.92436 * 2 1 4 4 C 1.38948 * 120.06269 * 180.02562 * 3 2 1 5 5 N 1.39671 * 120.04041 * 179.97438 * 4 3 2 6 6 C 1.38802 * 119.91935 * 359.69534 * 4 3 2 7 7 C 1.38715 * 119.85587 * 0.57887 * 6 4 3 8 8 N 1.39941 * 120.03092 * 179.69853 * 7 6 4 9 9 C 1.34784 * 120.00046 * 326.52732 * 8 7 6 10 10 O 1.21579 * 119.99694 * 354.68382 * 9 8 7 11 11 N 1.34779 * 119.99838 * 174.69022 * 9 8 7 12 12 C 1.46497 * 119.99820 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47485 * 34.99530 * 12 11 9 14 14 C 1.53008 * 109.46744 * 274.99851 * 12 11 9 15 15 C 1.50696 * 109.47311 * 155.00021 * 12 11 9 16 16 H 1.08002 * 120.00005 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99955 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00175 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99941 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47516 * 89.99465 * 19 17 15 21 21 H 1.48504 * 109.47203 * 209.99913 * 19 17 15 22 22 H 1.48504 * 109.46707 * 329.99406 * 19 17 15 23 23 C 1.38142 * 119.92851 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47417 * 269.98115 * 1 2 3 25 25 H 1.08998 * 109.47264 * 29.97950 * 1 2 3 26 26 H 1.09003 * 109.46832 * 149.98006 * 1 2 3 27 27 H 1.08004 * 119.96944 * 0.02562 * 3 2 1 28 28 H 0.97004 * 120.00213 * 0.02562 * 5 4 3 29 29 H 0.96992 * 119.99850 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.07179 * 180.27407 * 6 4 3 31 31 H 0.97001 * 120.00540 * 146.79891 * 8 7 6 32 32 H 0.96998 * 119.99946 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46878 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.47037 * 299.99551 * 14 12 11 35 35 H 1.08996 * 109.47337 * 60.00044 * 14 12 11 36 36 H 0.97007 * 120.00207 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.96199 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1975 0.0000 4 6 3.5857 1.2008 -0.0005 5 7 4.2820 2.4116 -0.0011 6 6 4.2810 -0.0005 0.0053 7 6 3.5856 -1.2008 -0.0005 8 7 4.2829 -2.4141 -0.0010 9 6 5.4653 -2.5116 -0.6405 10 8 5.8801 -1.5764 -1.2973 11 7 6.1878 -3.6460 -0.5519 12 6 7.4727 -3.7522 -1.2475 13 1 7.9719 -2.7832 -1.2388 14 6 7.2348 -4.1902 -2.6941 15 6 8.3387 -4.7696 -0.5505 16 1 7.9691 -5.2853 0.3235 17 6 9.6033 -5.0414 -1.0280 18 7 10.0536 -4.4131 -2.0919 19 14 10.6770 -6.3022 -0.1636 20 1 10.4362 -7.6442 -0.7519 21 1 12.1060 -5.9359 -0.3345 22 1 10.3424 -6.3286 1.2830 23 6 2.1962 -1.1972 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6545 2.1318 0.0004 28 1 3.7956 3.2509 -0.0007 29 1 5.2519 2.4132 -0.0011 30 1 5.3610 -0.0008 0.0094 31 1 3.9134 -3.1861 0.4556 32 1 5.8570 -4.3920 -0.0277 33 1 8.1909 -4.2697 -3.2116 34 1 6.7358 -5.1592 -2.7029 35 1 6.6085 -3.4543 -3.1983 36 1 10.9434 -4.6041 -2.4277 37 1 1.6544 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601568192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:31 Heat of formation + Delta-G solvation = -35.567325 kcal Electronic energy + Delta-G solvation = -19266.779453 eV Core-core repulsion = 16235.449166 eV Total energy + Delta-G solvation = -3031.330286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56191 -39.92048 -37.06010 -36.14332 -35.25842 -34.37150 -32.05283 -30.51805 -29.17999 -27.65486 -27.33872 -24.20329 -22.67055 -22.25684 -21.34012 -19.82396 -18.55641 -17.94544 -17.45444 -17.14477 -16.82120 -16.19535 -16.10860 -15.57352 -15.17327 -14.86418 -14.57731 -14.38248 -13.91578 -13.79540 -13.37831 -13.01810 -12.95093 -12.86821 -12.72539 -12.46823 -12.36518 -12.29361 -12.13641 -11.88259 -11.10940 -11.08944 -10.61756 -10.57577 -9.81168 -9.00313 -8.36311 -8.17770 -6.35333 0.50761 0.72949 1.45457 1.46484 1.56868 1.80365 2.21055 2.42282 3.02046 3.04357 3.12868 3.48760 4.02114 4.35158 4.44392 4.52962 4.66537 4.70970 4.79290 4.92440 4.97475 5.00590 5.08722 5.23496 5.33592 5.43447 5.48507 5.58988 5.60011 5.67694 5.78904 5.87363 6.08087 6.11828 6.30934 6.62155 6.72382 7.03640 7.24517 7.33813 7.68739 8.88853 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.003921 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.825025 B = 7139.814147 C = 7455.964175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.022 4.022 3 C -0.224 4.224 4 C 0.228 3.772 5 N -0.869 5.869 6 C -0.238 4.238 7 C 0.204 3.796 8 N -0.677 5.677 9 C 0.692 3.308 10 O -0.624 6.624 11 N -0.714 5.714 12 C 0.288 3.712 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.547 4.547 16 H 0.074 0.926 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.214 4.214 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.409 0.591 29 H 0.399 0.601 30 H 0.099 0.901 31 H 0.421 0.579 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 7.217 6.811 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.024 4.024 3 C -0.248 4.248 4 C 0.122 3.878 5 N -0.409 5.409 6 C -0.264 4.264 7 C 0.108 3.892 8 N -0.325 5.325 9 C 0.392 3.608 10 O -0.504 6.504 11 N -0.367 5.367 12 C 0.185 3.815 13 H 0.016 0.984 14 C -0.193 4.193 15 C -0.585 4.585 16 H 0.092 0.908 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.800 3.200 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.237 4.237 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.240 0.760 29 H 0.227 0.773 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.425 7.968 6.102 20.108 hybrid contribution 1.191 -0.848 0.422 1.522 sum -16.234 7.120 6.524 18.889 Atomic orbital electron populations 1.20828 0.88447 1.03725 1.03458 1.19773 0.97303 0.91301 0.94009 1.20640 0.90996 0.99266 1.13870 1.17690 0.91935 0.86098 0.92075 1.42418 1.09230 1.04736 1.84521 1.20488 0.99360 0.91677 1.14880 1.17468 0.91232 0.84166 0.96368 1.42540 1.20340 1.13285 1.56381 1.16277 0.80858 0.83690 0.79984 1.90858 1.72148 1.40154 1.47251 1.45456 1.22253 1.15002 1.53975 1.18260 0.78582 0.95381 0.89308 0.98354 1.21925 1.00760 0.97820 0.98779 1.21523 1.00165 1.23302 1.13505 0.90755 1.25809 0.98969 0.98219 0.95566 1.70059 1.18619 1.42863 1.24031 0.85301 0.77178 0.78601 0.78967 1.19549 1.21238 1.18840 1.20685 0.90490 0.99648 1.12854 0.89612 0.90374 0.90691 0.83924 0.76028 0.77292 0.88333 0.74128 0.76145 0.91332 0.93999 0.97201 0.92498 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.02 -0.49 5.87 -19.90 -0.12 -0.61 16 3 C -0.22 -5.15 9.54 22.42 0.21 -4.94 16 4 C 0.23 6.44 6.75 38.20 0.26 6.69 16 5 N -0.87 -19.12 9.09 -51.42 -0.47 -19.58 16 6 C -0.24 -8.46 8.50 22.52 0.19 -8.27 16 7 C 0.20 6.64 6.27 38.13 0.24 6.88 16 8 N -0.68 -22.10 5.35 -317.23 -1.70 -23.80 16 9 C 0.69 29.84 8.26 179.05 1.48 31.32 16 10 O -0.62 -32.70 13.70 -3.97 -0.05 -32.75 16 11 N -0.71 -30.68 5.07 -461.41 -2.34 -33.02 16 12 C 0.29 15.31 2.56 44.25 0.11 15.42 16 13 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 14 C -0.13 -6.97 9.26 71.98 0.67 -6.30 16 15 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 16 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 17 C 0.01 0.78 5.30 84.65 0.45 1.23 16 18 N -0.92 -52.97 11.32 21.45 0.24 -52.72 16 19 Si 0.98 42.04 29.54 68.60 2.03 44.07 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 23 C -0.21 -5.42 9.61 22.42 0.22 -5.20 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.41 6.27 8.84 -92.71 -0.82 5.45 16 29 H 0.40 8.90 8.84 -92.71 -0.82 8.08 16 30 H 0.10 4.19 6.42 -2.91 -0.02 4.17 16 31 H 0.42 10.17 8.83 -92.71 -0.82 9.35 16 32 H 0.40 14.28 8.56 -92.71 -0.79 13.49 16 33 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -71.90 313.96 0.24 -71.66 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -2.12 Total: 39.61 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 4.65 Total: 6.54 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -4.26 Total: -129.13 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.90 0.24 -71.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601568192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.092 kcal (2) G-P(sol) polarization free energy of solvation -71.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds