Wall clock time and date at job start Mon Mar 30 2020 07:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 119.92874 * 2 1 4 4 C 1.38944 * 120.06390 * 180.02562 * 3 2 1 5 5 N 1.39670 * 120.03701 * 179.97438 * 4 3 2 6 6 C 1.38807 * 119.92068 * 359.70060 * 4 3 2 7 7 C 1.38704 * 119.85410 * 0.60004 * 6 4 3 8 8 N 1.39947 * 120.03094 * 179.68143 * 7 6 4 9 9 C 1.34775 * 119.99686 * 326.51542 * 8 7 6 10 10 O 1.21583 * 119.99913 * 354.69126 * 9 8 7 11 11 N 1.34777 * 119.99639 * 174.68926 * 9 8 7 12 12 C 1.46503 * 119.99819 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46955 * 325.00581 * 12 11 9 14 14 C 1.53001 * 109.46912 * 84.99867 * 12 11 9 15 15 C 1.50692 * 109.47132 * 204.99950 * 12 11 9 16 16 H 1.07998 * 120.00636 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99947 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00238 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00182 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47448 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47079 * 300.00141 * 19 17 15 22 22 H 1.48499 * 109.47255 * 59.99897 * 19 17 15 23 23 C 1.38138 * 119.92612 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47011 * 269.97804 * 1 2 3 25 25 H 1.09001 * 109.47200 * 29.97760 * 1 2 3 26 26 H 1.09000 * 109.47621 * 149.98134 * 1 2 3 27 27 H 1.08005 * 119.96650 * 0.02562 * 3 2 1 28 28 H 0.96998 * 120.00721 * 359.97438 * 5 4 3 29 29 H 0.97003 * 119.99753 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.06964 * 180.27003 * 6 4 3 31 31 H 0.97003 * 120.00027 * 146.52580 * 8 7 6 32 32 H 0.96995 * 120.00566 * 0.02562 * 11 9 8 33 33 H 1.09004 * 109.47152 * 179.97438 * 14 12 11 34 34 H 1.08994 * 109.47629 * 300.00574 * 14 12 11 35 35 H 1.09004 * 109.46728 * 60.00575 * 14 12 11 36 36 H 0.96996 * 120.00688 * 180.02562 * 18 17 15 37 37 H 1.08000 * 119.96236 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1974 0.0000 4 6 3.5858 1.2007 -0.0005 5 7 4.2821 2.4115 -0.0011 6 6 4.2810 -0.0007 0.0052 7 6 3.5856 -1.2009 -0.0011 8 7 4.2829 -2.4143 -0.0021 9 6 5.4651 -2.5116 -0.6418 10 8 5.8799 -1.5760 -1.2983 11 7 6.1876 -3.6459 -0.5537 12 6 7.4730 -3.7515 -1.2486 13 1 7.4222 -3.2066 -2.1913 14 6 8.5765 -3.1543 -0.3731 15 6 7.7784 -5.2016 -1.5223 16 1 7.0844 -5.9679 -1.2103 17 6 8.9436 -5.5500 -2.1720 18 7 9.7886 -4.6168 -2.5524 19 14 9.3219 -7.3474 -2.5119 20 1 10.6243 -7.4544 -3.2172 21 1 9.3913 -8.0900 -1.2278 22 1 8.2505 -7.9267 -3.3614 23 6 2.1962 -1.1972 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6546 2.1318 0.0004 28 1 3.7957 3.2507 -0.0015 29 1 5.2521 2.4131 -0.0011 30 1 5.3610 -0.0010 0.0092 31 1 3.9151 -3.1853 0.4575 32 1 5.8565 -4.3924 -0.0303 33 1 9.5330 -3.2332 -0.8899 34 1 8.3556 -2.1055 -0.1750 35 1 8.6273 -3.6992 0.5696 36 1 10.6081 -4.8618 -3.0098 37 1 1.6543 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601568193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:34 Heat of formation + Delta-G solvation = -35.474345 kcal Electronic energy + Delta-G solvation = -19272.762184 eV Core-core repulsion = 16241.435930 eV Total energy + Delta-G solvation = -3031.326255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56228 -39.91996 -37.05833 -36.14172 -35.25883 -34.36886 -32.05690 -30.51413 -29.18086 -27.65344 -27.33906 -24.20237 -22.67838 -22.24135 -21.34945 -19.82328 -18.57637 -17.94651 -17.42883 -17.08341 -16.83790 -16.21727 -16.09547 -15.63401 -15.15975 -14.86909 -14.57459 -14.37863 -13.96317 -13.71747 -13.38505 -13.01805 -12.96066 -12.84991 -12.72360 -12.47221 -12.37939 -12.27135 -12.14138 -11.89339 -11.13089 -11.07775 -10.59630 -10.58102 -9.81903 -9.00094 -8.36235 -8.17405 -6.35045 0.50816 0.72882 1.45687 1.48308 1.55868 1.80301 2.20988 2.42801 3.02327 3.04029 3.13278 3.48792 4.02080 4.35138 4.44348 4.52853 4.66573 4.70637 4.79457 4.92027 4.97236 5.00570 5.08510 5.23212 5.33415 5.43385 5.48701 5.58906 5.59882 5.68178 5.78851 5.86978 6.08147 6.11821 6.31063 6.62310 6.72439 7.03760 7.24520 7.34043 7.68770 8.89100 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.003972 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.417068 B = 7048.463971 C = 7614.250796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.023 4.023 3 C -0.224 4.224 4 C 0.228 3.772 5 N -0.869 5.869 6 C -0.238 4.238 7 C 0.204 3.796 8 N -0.677 5.677 9 C 0.692 3.308 10 O -0.624 6.624 11 N -0.714 5.714 12 C 0.288 3.712 13 H -0.002 1.002 14 C -0.133 4.133 15 C -0.548 4.548 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.263 1.263 22 H -0.271 1.271 23 C -0.215 4.215 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.409 0.591 29 H 0.399 0.601 30 H 0.100 0.900 31 H 0.421 0.579 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 7.893 8.302 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.024 4.024 3 C -0.248 4.248 4 C 0.122 3.878 5 N -0.409 5.409 6 C -0.263 4.263 7 C 0.107 3.893 8 N -0.326 5.326 9 C 0.392 3.608 10 O -0.504 6.504 11 N -0.367 5.367 12 C 0.185 3.815 13 H 0.016 0.984 14 C -0.192 4.192 15 C -0.587 4.587 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.799 3.201 20 H -0.212 1.212 21 H -0.188 1.188 22 H -0.196 1.196 23 C -0.237 4.237 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.240 0.760 29 H 0.227 0.773 30 H 0.118 0.882 31 H 0.259 0.741 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.503 8.655 7.616 20.131 hybrid contribution 0.909 -1.053 -0.025 1.392 sum -15.594 7.601 7.591 18.936 Atomic orbital electron populations 1.20828 0.88478 1.03703 1.03462 1.19769 0.97293 0.91312 0.94030 1.20638 0.91032 0.99240 1.13858 1.17688 0.91922 0.86123 0.92072 1.42414 1.09232 1.04718 1.84522 1.20486 0.99403 0.91610 1.14823 1.17468 0.91216 0.84192 0.96376 1.42541 1.20441 1.13343 1.56226 1.16274 0.80767 0.83768 0.79996 1.90859 1.72416 1.40025 1.47119 1.45456 1.22351 1.14811 1.54072 1.18256 0.77910 0.95726 0.89642 0.98400 1.21913 1.02038 0.96033 0.99199 1.21506 1.06097 0.91710 1.39339 0.90707 1.25812 0.95557 1.02458 0.94726 1.70048 1.11387 1.34717 1.39437 0.85356 0.77235 0.78774 0.78703 1.21182 1.18769 1.19586 1.20689 0.90550 0.99631 1.12867 0.89586 0.90373 0.90748 0.83925 0.76034 0.77270 0.88196 0.74140 0.76148 0.91316 0.97140 0.94092 0.92492 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.02 -0.50 5.87 -19.91 -0.12 -0.61 16 3 C -0.22 -5.14 9.54 22.42 0.21 -4.93 16 4 C 0.23 6.39 6.75 38.20 0.26 6.64 16 5 N -0.87 -18.84 9.09 -51.42 -0.47 -19.31 16 6 C -0.24 -8.36 8.50 22.52 0.19 -8.16 16 7 C 0.20 6.63 6.27 38.13 0.24 6.86 16 8 N -0.68 -22.11 5.35 -317.24 -1.70 -23.80 16 9 C 0.69 29.83 8.26 179.05 1.48 31.31 16 10 O -0.62 -32.68 13.70 -3.98 -0.05 -32.74 16 11 N -0.71 -30.68 5.07 -461.42 -2.34 -33.02 16 12 C 0.29 15.31 2.56 44.24 0.11 15.42 16 13 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 14 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 15 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 16 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 19 Si 0.98 42.02 29.54 68.60 2.03 44.04 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 C -0.21 -5.47 9.61 22.42 0.22 -5.25 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 26 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.41 6.18 8.84 -92.71 -0.82 5.36 16 29 H 0.40 8.72 8.84 -92.71 -0.82 7.90 16 30 H 0.10 4.18 6.42 -2.91 -0.02 4.16 16 31 H 0.42 10.20 8.83 -92.71 -0.82 9.38 16 32 H 0.40 14.28 8.56 -92.71 -0.79 13.49 16 33 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -71.83 313.96 0.24 -71.59 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -2.12 Total: 39.51 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.65 Total: 6.50 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -4.26 Total: -128.91 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.74 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -71.83 0.24 -71.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601568193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.116 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds