Wall clock time and date at job start Mon Mar 30 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.45790 * 2 1 4 4 C 1.54477 * 110.51030 * 122.74923 * 2 1 3 5 5 O 1.44421 * 104.80139 * 142.62211 * 4 2 1 6 6 C 1.44421 * 105.27931 * 319.49040 * 5 4 2 7 7 C 1.54473 * 104.80102 * 40.50962 * 6 5 4 8 8 H 1.09000 * 110.62989 * 94.72580 * 7 6 5 9 9 N 1.46499 * 110.51177 * 217.37629 * 7 6 5 10 10 C 1.39674 * 120.00251 * 269.64123 * 9 7 6 11 11 C 1.39000 * 120.03655 * 0.02562 * 10 9 7 12 12 C 1.38150 * 120.05976 * 179.97438 * 11 10 9 13 13 C 1.38176 * 120.14183 * 0.23408 * 12 11 10 14 14 C 1.38918 * 120.07654 * 359.48826 * 13 12 11 15 15 O 1.35757 * 120.02760 * 180.23102 * 14 13 12 16 16 C 1.34828 * 116.99481 * 174.75826 * 15 14 13 17 17 H 1.07996 * 120.00453 * 5.06478 * 16 15 14 18 18 C 1.38656 * 119.99461 * 185.05914 * 16 15 14 19 19 N 1.31551 * 120.00352 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47386 * 119.99974 * 20 18 16 23 23 H 1.48494 * 109.47054 * 240.00316 * 20 18 16 24 24 C 1.38745 * 120.03735 * 179.97438 * 10 9 7 25 25 H 1.08996 * 109.47394 * 182.60863 * 1 2 3 26 26 H 1.08999 * 109.46865 * 302.60868 * 1 2 3 27 27 H 1.09004 * 109.46946 * 62.60268 * 1 2 3 28 28 H 1.08998 * 110.37651 * 261.45302 * 4 2 1 29 29 H 1.09002 * 110.37131 * 23.68091 * 4 2 1 30 30 H 1.09001 * 110.36963 * 281.67743 * 6 5 4 31 31 H 1.08999 * 110.37748 * 159.34490 * 6 5 4 32 32 H 0.97008 * 119.99890 * 89.64659 * 9 7 6 33 33 H 1.07999 * 119.97354 * 359.97190 * 11 10 9 34 34 H 1.08000 * 119.93185 * 179.97438 * 12 11 10 35 35 H 1.08005 * 119.95678 * 179.72067 * 13 12 11 36 36 H 0.97003 * 120.00602 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.07494 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7827 1.2169 5 8 3.2398 -1.4722 0.7220 6 6 2.8757 -1.9414 -0.5945 7 6 2.0714 -0.7798 -1.2190 8 1 2.7200 -0.1441 -1.8217 9 7 0.9662 -1.2980 -2.0290 10 6 1.1588 -1.5600 -3.3874 11 6 2.3991 -1.3299 -3.9713 12 6 2.5903 -1.5894 -5.3147 13 6 1.5489 -2.0736 -6.0829 14 6 0.3086 -2.3111 -5.5041 15 8 -0.7126 -2.7912 -6.2588 16 6 -1.8558 -3.1020 -5.6151 17 1 -1.9572 -2.8891 -4.5612 18 6 -2.9014 -3.6948 -6.3063 19 7 -2.7779 -3.9545 -7.5900 20 14 -4.4856 -4.1248 -5.4147 21 1 -4.3720 -3.7330 -3.9868 22 1 -5.6186 -3.3955 -6.0389 23 1 -4.7258 -5.5871 -5.5097 24 6 0.1128 -2.0512 -4.1551 25 1 -0.3634 -1.0265 0.0468 26 1 -0.3633 0.5538 0.8657 27 1 -0.3633 0.4729 -0.9124 28 1 2.3465 -0.0964 2.0177 29 1 1.3277 -1.4975 1.5695 30 1 2.2564 -2.8354 -0.5208 31 1 3.7688 -2.1453 -1.1852 32 1 0.1005 -1.4590 -1.6220 33 1 3.2140 -0.9479 -3.3743 34 1 3.5547 -1.4095 -5.7663 35 1 1.7004 -2.2711 -7.1339 36 1 -3.5092 -4.3695 -8.0736 37 1 -0.8518 -2.2312 -3.7038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688045138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:11 Heat of formation + Delta-G solvation = -38.821644 kcal Electronic energy + Delta-G solvation = -19605.751334 eV Core-core repulsion = 16541.987178 eV Total energy + Delta-G solvation = -3063.764155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10835 -38.83691 -36.83811 -34.90412 -32.70490 -32.11715 -29.88339 -28.50698 -27.33306 -26.47835 -25.24267 -22.95858 -21.75967 -21.26040 -19.57946 -17.81787 -17.77659 -16.44991 -16.10231 -15.48658 -15.41951 -14.95524 -14.54991 -14.24630 -13.93005 -13.62910 -13.52882 -12.98856 -12.74472 -12.56231 -12.45913 -12.22253 -11.67826 -11.54328 -11.29341 -11.15348 -10.93690 -10.89915 -10.75294 -10.49475 -10.36935 -9.98484 -9.41828 -9.38203 -8.76989 -7.37648 -6.80722 -6.41804 -4.01062 2.36736 2.54177 3.12985 3.13953 3.19156 3.54078 3.98235 4.04139 4.29179 4.53117 4.67116 4.78109 5.01575 5.10176 5.15215 5.22005 5.34629 5.37629 5.45203 5.59371 5.68112 5.73698 5.77710 5.86102 5.96403 6.00227 6.26631 6.33743 6.53143 6.63611 6.69070 7.02001 7.14808 7.38100 7.47636 7.64790 7.98466 8.04153 8.16189 9.04363 9.76917 10.76599 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.005021 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.152756 B = 5575.503536 C = 6535.946078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.376 6.376 6 C 0.029 3.971 7 C 0.129 3.871 8 H 0.095 0.905 9 N -0.745 5.745 10 C 0.246 3.754 11 C -0.280 4.280 12 C -0.039 4.039 13 C -0.235 4.235 14 C 0.189 3.811 15 O -0.178 6.178 16 C -0.389 4.389 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.300 4.300 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.398 0.602 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.269 0.731 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 6.476 14.524 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 H 0.108 0.892 4 C -0.029 4.029 5 O -0.295 6.295 6 C -0.050 4.050 7 C 0.022 3.978 8 H 0.112 0.888 9 N -0.379 5.379 10 C 0.145 3.855 11 C -0.303 4.303 12 C -0.058 4.058 13 C -0.256 4.256 14 C 0.135 3.865 15 O -0.081 6.081 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.324 4.324 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.235 0.765 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.117 6.359 14.263 17.162 hybrid contribution -1.345 -0.266 0.533 1.471 sum 5.773 6.093 14.796 17.011 Atomic orbital electron populations 1.21744 0.93841 1.02121 1.02769 1.22758 0.97247 1.00529 0.94860 0.89192 1.23500 0.88192 0.94982 0.96205 1.89122 1.35014 1.73993 1.31325 1.24070 1.00305 0.97187 0.83431 1.22098 0.89429 0.94384 0.91927 0.88751 1.44773 1.12983 1.73687 1.06506 1.17486 0.93393 0.91848 0.82725 1.20104 0.96239 1.17928 0.96036 1.20384 0.96985 0.95510 0.92964 1.20055 0.91803 1.13473 1.00255 1.19073 0.88356 0.89897 0.89186 1.83992 1.19638 1.70231 1.34268 1.21336 0.89539 1.40691 0.94961 0.89168 1.25270 0.99074 0.96378 0.95838 1.70046 1.32634 1.39764 1.07451 0.85672 0.80384 0.78491 0.78982 1.19266 1.20199 1.20182 1.20485 0.99576 1.17448 0.94888 0.92234 0.92077 0.91184 0.89150 0.92161 0.91676 0.88680 0.76475 0.87814 0.87174 0.86894 0.92149 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.81 37.16 0.29 -1.04 16 2 C -0.13 -1.29 3.72 -89.05 -0.33 -1.63 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.05 0.46 7.19 37.93 0.27 0.73 16 5 O -0.38 -4.65 11.65 -35.23 -0.41 -5.06 16 6 C 0.03 0.35 7.35 37.93 0.28 0.62 16 7 C 0.13 1.54 3.17 -66.37 -0.21 1.33 16 8 H 0.09 1.16 6.40 -51.93 -0.33 0.82 16 9 N -0.74 -10.67 4.73 -50.68 -0.24 -10.91 16 10 C 0.25 4.49 6.65 -83.82 -0.56 3.93 16 11 C -0.28 -4.89 9.22 -39.33 -0.36 -5.26 16 12 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 13 C -0.24 -5.10 9.99 -39.35 -0.39 -5.49 16 14 C 0.19 4.65 6.64 -39.14 -0.26 4.39 16 15 O -0.18 -5.15 9.76 0.03 0.00 -5.14 16 16 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 20 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 C -0.30 -6.54 9.01 -39.20 -0.35 -6.90 16 25 H 0.06 0.54 6.94 -51.93 -0.36 0.18 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.72 7.78 -51.93 -0.40 0.31 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 30 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 5.35 5.98 -40.82 -0.24 5.11 16 33 H 0.10 1.55 6.20 -52.49 -0.33 1.23 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.12 2.71 5.64 -52.49 -0.30 2.41 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -30.99 303.45 -6.90 -37.89 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.73 Total: 7.92 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.83 Total: -20.09 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.52 Total: -35.64 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.41 Total: -10.20 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.99 -6.90 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688045138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.935 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds