Wall clock time and date at job start Mon Mar 30 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.45790 * 2 1 4 4 C 1.54477 * 110.51030 * 122.74923 * 2 1 3 5 5 O 1.44421 * 104.80139 * 142.62211 * 4 2 1 6 6 C 1.44421 * 105.27931 * 319.49040 * 5 4 2 7 7 C 1.54473 * 104.80102 * 40.50962 * 6 5 4 8 8 H 1.09000 * 110.62989 * 94.72580 * 7 6 5 9 9 N 1.46499 * 110.51177 * 217.37629 * 7 6 5 10 10 C 1.39674 * 120.00251 * 269.64123 * 9 7 6 11 11 C 1.39000 * 120.03655 * 0.02562 * 10 9 7 12 12 C 1.38150 * 120.05976 * 179.97438 * 11 10 9 13 13 C 1.38176 * 120.14183 * 0.23408 * 12 11 10 14 14 C 1.38918 * 120.07654 * 359.48826 * 13 12 11 15 15 O 1.35757 * 120.02760 * 180.23102 * 14 13 12 16 16 C 1.34828 * 116.99481 * 174.75826 * 15 14 13 17 17 H 1.07996 * 120.00453 * 5.06478 * 16 15 14 18 18 C 1.38656 * 119.99461 * 185.05914 * 16 15 14 19 19 N 1.31551 * 120.00352 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47386 * 119.99974 * 20 18 16 23 23 H 1.48494 * 109.47054 * 240.00316 * 20 18 16 24 24 C 1.38745 * 120.03735 * 179.97438 * 10 9 7 25 25 H 1.08996 * 109.47394 * 182.60863 * 1 2 3 26 26 H 1.08999 * 109.46865 * 302.60868 * 1 2 3 27 27 H 1.09004 * 109.46946 * 62.60268 * 1 2 3 28 28 H 1.08998 * 110.37651 * 261.45302 * 4 2 1 29 29 H 1.09002 * 110.37131 * 23.68091 * 4 2 1 30 30 H 1.09001 * 110.36963 * 281.67743 * 6 5 4 31 31 H 1.08999 * 110.37748 * 159.34490 * 6 5 4 32 32 H 0.97008 * 119.99890 * 89.64659 * 9 7 6 33 33 H 1.07999 * 119.97354 * 359.97190 * 11 10 9 34 34 H 1.08000 * 119.93185 * 179.97438 * 12 11 10 35 35 H 1.08005 * 119.95678 * 179.72067 * 13 12 11 36 36 H 0.97003 * 120.00602 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.07494 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7827 1.2169 5 8 3.2398 -1.4722 0.7220 6 6 2.8757 -1.9414 -0.5945 7 6 2.0714 -0.7798 -1.2190 8 1 2.7200 -0.1441 -1.8217 9 7 0.9662 -1.2980 -2.0290 10 6 1.1588 -1.5600 -3.3874 11 6 2.3991 -1.3299 -3.9713 12 6 2.5903 -1.5894 -5.3147 13 6 1.5489 -2.0736 -6.0829 14 6 0.3086 -2.3111 -5.5041 15 8 -0.7126 -2.7912 -6.2588 16 6 -1.8558 -3.1020 -5.6151 17 1 -1.9572 -2.8891 -4.5612 18 6 -2.9014 -3.6948 -6.3063 19 7 -2.7779 -3.9545 -7.5900 20 14 -4.4856 -4.1248 -5.4147 21 1 -4.3720 -3.7330 -3.9868 22 1 -5.6186 -3.3955 -6.0389 23 1 -4.7258 -5.5871 -5.5097 24 6 0.1128 -2.0512 -4.1551 25 1 -0.3634 -1.0265 0.0468 26 1 -0.3633 0.5538 0.8657 27 1 -0.3633 0.4729 -0.9124 28 1 2.3465 -0.0964 2.0177 29 1 1.3277 -1.4975 1.5695 30 1 2.2564 -2.8354 -0.5208 31 1 3.7688 -2.1453 -1.1852 32 1 0.1005 -1.4590 -1.6220 33 1 3.2140 -0.9479 -3.3743 34 1 3.5547 -1.4095 -5.7663 35 1 1.7004 -2.2711 -7.1339 36 1 -3.5092 -4.3695 -8.0736 37 1 -0.8518 -2.2312 -3.7038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688045138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:11 Heat of formation + Delta-G solvation = -59.428984 kcal Electronic energy + Delta-G solvation = -19606.644935 eV Core-core repulsion = 16541.987178 eV Total energy + Delta-G solvation = -3064.657757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19404 -40.41709 -38.45033 -36.15374 -34.27983 -33.59581 -31.21544 -30.04406 -28.64171 -27.34915 -27.12141 -23.94909 -23.38644 -22.59955 -20.78550 -19.58966 -19.24036 -17.75275 -17.21187 -16.71512 -16.64501 -16.29986 -15.97525 -15.69228 -15.52909 -15.36083 -14.62867 -14.40677 -14.10731 -13.86695 -13.49357 -13.48895 -13.26139 -12.91779 -12.62813 -12.47041 -12.27471 -12.09865 -12.03121 -11.86940 -11.58448 -11.28629 -11.00582 -10.80874 -10.58914 -9.11358 -8.45132 -8.26496 -6.13415 0.76115 0.90482 1.34403 1.43896 1.52642 2.18242 2.39609 2.89171 3.12416 3.25695 3.45566 3.59926 3.76821 3.89302 4.11711 4.21706 4.24726 4.42083 4.45769 4.60356 4.62505 4.66667 4.73582 4.79721 4.83946 4.97414 5.04991 5.12734 5.14927 5.16659 5.25381 5.44007 5.73356 5.76421 5.80824 6.03494 6.11372 6.57742 6.81300 7.00252 7.83640 8.78704 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.005021 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.152756 B = 5575.503536 C = 6535.946078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 H 0.105 0.895 4 C 0.045 3.955 5 O -0.391 6.391 6 C 0.031 3.969 7 C 0.123 3.877 8 H 0.100 0.900 9 N -0.733 5.733 10 C 0.255 3.745 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.261 4.261 14 C 0.152 3.848 15 O -0.233 6.233 16 C -0.409 4.409 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.313 4.313 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.402 0.598 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 7.790 17.624 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 H 0.123 0.877 4 C -0.031 4.031 5 O -0.309 6.309 6 C -0.048 4.048 7 C 0.017 3.983 8 H 0.118 0.882 9 N -0.366 5.366 10 C 0.152 3.848 11 C -0.286 4.286 12 C -0.044 4.044 13 C -0.282 4.282 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.486 4.486 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.337 4.337 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.241 0.759 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.341 7.708 17.436 20.809 hybrid contribution -1.416 -0.530 -0.234 1.530 sum 6.925 7.178 17.203 19.885 Atomic orbital electron populations 1.21733 0.93522 1.02112 1.03050 1.22753 0.97429 1.00914 0.93501 0.87679 1.23689 0.87564 0.95293 0.96578 1.89118 1.36261 1.74329 1.31209 1.23991 1.00274 0.96721 0.83791 1.22317 0.88722 0.94709 0.92559 0.88210 1.44875 1.14143 1.72494 1.05113 1.17546 0.92757 0.90342 0.84193 1.20581 0.96595 1.15466 0.96001 1.20829 0.97444 0.93092 0.93064 1.20277 0.92055 1.15180 1.00638 1.19642 0.88666 0.91041 0.90545 1.83954 1.20903 1.72950 1.36098 1.21821 0.90058 1.41081 0.95605 0.88301 1.26578 1.02894 0.95955 0.96704 1.70193 1.34267 1.42037 1.09549 0.84537 0.75032 0.78374 0.78280 1.17515 1.19326 1.19410 1.20482 1.00368 1.18502 0.94348 0.92573 0.90071 0.92494 0.86966 0.91756 0.92684 0.88235 0.75943 0.84052 0.83063 0.87615 0.91916 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.81 71.98 0.56 -1.66 16 2 C -0.13 -1.97 3.72 -9.78 -0.04 -2.01 16 3 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 4 C 0.05 0.70 7.19 72.48 0.52 1.22 16 5 O -0.39 -8.41 11.65 -148.98 -1.74 -10.15 16 6 C 0.03 0.65 7.35 72.48 0.53 1.18 16 7 C 0.12 2.52 3.17 46.00 0.15 2.66 16 8 H 0.10 1.99 6.40 -2.39 -0.02 1.97 16 9 N -0.73 -19.28 4.73 -314.25 -1.49 -20.76 16 10 C 0.25 8.86 6.65 38.20 0.25 9.12 16 11 C -0.26 -8.32 9.22 22.43 0.21 -8.11 16 12 C -0.03 -0.88 10.03 22.23 0.22 -0.65 16 13 C -0.26 -11.49 9.99 22.42 0.22 -11.27 16 14 C 0.15 7.80 6.64 22.56 0.15 7.95 16 15 O -0.23 -14.34 9.76 -22.79 -0.22 -14.56 16 16 C -0.41 -24.21 9.49 67.92 0.64 -23.57 16 17 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 19 N -0.92 -57.32 13.67 21.61 0.30 -57.03 16 20 Si 1.02 43.23 29.55 68.60 2.03 45.26 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 24 C -0.31 -13.87 9.01 22.52 0.20 -13.67 16 25 H 0.06 0.89 6.94 -2.39 -0.02 0.87 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.03 7.78 -2.38 -0.02 1.01 16 28 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 0.95 7.82 -2.39 -0.02 0.93 16 30 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.40 10.10 5.98 -92.70 -0.55 9.55 16 33 H 0.14 3.47 6.20 -2.91 -0.02 3.45 16 34 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 Total: -1.00 -71.84 303.45 3.51 -68.33 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.53 Total: 28.65 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 4.10 Total: -39.73 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.19 Total: -77.79 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.96 Total: -24.71 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.84 3.51 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688045138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.902 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds