Wall clock time and date at job start Mon Mar 30 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.56342 * 2 1 4 4 C 1.54479 * 110.50951 * 237.31955 * 2 1 3 5 5 O 1.44421 * 104.80404 * 217.37738 * 4 2 1 6 6 C 1.44424 * 105.27402 * 40.51441 * 5 4 2 7 7 C 1.54474 * 104.80166 * 319.48740 * 6 5 4 8 8 H 1.09001 * 110.51135 * 265.19713 * 7 6 5 9 9 N 1.46498 * 110.50895 * 142.62554 * 7 6 5 10 10 C 1.39670 * 120.00189 * 86.45272 * 9 7 6 11 11 C 1.39012 * 120.04143 * 359.97438 * 10 9 7 12 12 C 1.38141 * 120.06543 * 179.97438 * 11 10 9 13 13 C 1.38182 * 120.14147 * 0.02562 * 12 11 10 14 14 C 1.38910 * 120.07836 * 0.02562 * 13 12 11 15 15 O 1.35752 * 120.03259 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00201 * 185.51713 * 15 14 13 17 17 H 1.07994 * 120.00203 * 354.91911 * 16 15 14 18 18 C 1.38656 * 119.99650 * 174.92178 * 16 15 14 19 19 N 1.31560 * 119.99604 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00384 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46912 * 270.00338 * 20 18 16 22 22 H 1.48504 * 109.47026 * 29.99537 * 20 18 16 23 23 H 1.48494 * 109.47404 * 150.00130 * 20 18 16 24 24 C 1.38757 * 120.04343 * 180.31252 * 10 9 7 25 25 H 1.08998 * 109.47011 * 297.32278 * 1 2 3 26 26 H 1.08999 * 109.47226 * 57.32006 * 1 2 3 27 27 H 1.09005 * 109.47182 * 177.32076 * 1 2 3 28 28 H 1.09003 * 110.37083 * 98.54714 * 4 2 1 29 29 H 1.08994 * 110.46788 * 336.25881 * 4 2 1 30 30 H 1.09006 * 110.36801 * 200.65612 * 6 5 4 31 31 H 1.08996 * 110.37203 * 78.32432 * 6 5 4 32 32 H 0.96998 * 120.00006 * 266.45274 * 9 7 6 33 33 H 1.08000 * 119.96546 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.93219 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.95845 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00089 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.06720 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2178 5 8 3.2398 -1.4714 -0.7239 6 6 2.8756 -1.9423 0.5920 7 6 2.0714 -0.7814 1.2180 8 1 2.7215 -0.1486 1.8221 9 7 0.9661 -1.3006 2.0273 10 6 1.1799 -1.6414 3.3649 11 6 2.4413 -1.4887 3.9288 12 6 2.6532 -1.8251 5.2518 13 6 1.6130 -2.3146 6.0185 14 6 0.3504 -2.4705 5.4606 15 8 -0.6707 -2.9520 6.2145 16 6 -1.8393 -3.1866 5.5842 17 1 -1.9566 -2.9149 4.5456 18 6 -2.8903 -3.7766 6.2695 19 7 -4.0304 -4.0060 5.6543 20 14 -2.6876 -4.2459 8.0662 21 1 -2.1728 -5.6357 8.1597 22 1 -1.7270 -3.3176 8.7149 23 1 -4.0016 -4.1575 8.7522 24 6 0.1353 -2.1393 4.1304 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5549 -0.8650 27 1 -0.3634 -1.0266 -0.0480 28 1 2.3465 -0.0939 -2.0178 29 1 1.3293 -1.4969 -1.5720 30 1 3.7689 -2.1468 1.1824 31 1 2.2563 -2.8361 0.5173 32 1 0.0858 -1.4077 1.6344 33 1 3.2562 -1.1060 3.3323 34 1 3.6340 -1.7053 5.6879 35 1 1.7819 -2.5763 7.0526 36 1 -4.7658 -4.4184 6.1338 37 1 -0.8443 -2.2644 3.6931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688045141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:14 Heat of formation + Delta-G solvation = -37.119779 kcal Electronic energy + Delta-G solvation = -19615.818464 eV Core-core repulsion = 16552.128107 eV Total energy + Delta-G solvation = -3063.690357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13321 -38.98401 -36.98572 -34.96542 -32.73034 -32.24210 -29.94879 -28.72138 -27.39849 -26.47792 -25.16139 -22.95694 -21.76663 -21.29413 -19.53007 -17.99939 -17.71168 -16.57427 -16.11933 -15.50717 -15.47916 -15.06648 -14.60497 -14.22077 -13.86014 -13.67909 -13.55993 -13.10162 -12.76254 -12.53946 -12.37723 -12.21875 -12.13557 -11.60624 -11.29509 -11.12296 -10.97138 -10.82832 -10.82392 -10.52530 -10.20000 -9.98411 -9.47301 -9.42106 -8.81657 -7.49581 -6.89499 -6.39487 -4.06306 2.27190 2.42978 3.23786 3.27572 3.42645 3.52494 4.03154 4.26194 4.27905 4.52011 4.61383 4.76595 4.92986 5.01518 5.11028 5.14641 5.22291 5.36664 5.46548 5.58047 5.62491 5.71331 5.76443 5.84790 5.93956 5.98667 6.12704 6.27913 6.46051 6.53001 6.62980 6.93948 7.20227 7.26323 7.50104 7.79733 7.88924 8.02915 8.15074 8.96648 9.61001 10.68386 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.004703 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.775716 B = 5952.369925 C = 6665.253204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.376 6.376 6 C 0.028 3.972 7 C 0.129 3.871 8 H 0.092 0.908 9 N -0.744 5.744 10 C 0.246 3.754 11 C -0.273 4.273 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.196 3.804 15 O -0.218 6.218 16 C -0.387 4.387 17 H 0.105 0.895 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.259 1.259 23 H -0.283 1.283 24 C -0.289 4.289 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.278 0.722 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.718 6.919 -10.017 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 H 0.108 0.892 4 C -0.029 4.029 5 O -0.295 6.295 6 C -0.050 4.050 7 C 0.022 3.978 8 H 0.110 0.890 9 N -0.379 5.379 10 C 0.145 3.855 11 C -0.296 4.296 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.143 3.857 15 O -0.122 6.122 16 C -0.463 4.463 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.183 1.183 23 H -0.209 1.209 24 C -0.313 4.313 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.826 6.805 -9.933 16.191 hybrid contribution -0.699 -0.273 0.544 0.927 sum 10.127 6.531 -9.389 15.276 Atomic orbital electron populations 1.21757 0.93755 1.02308 1.02852 1.22738 0.97287 1.00489 0.94733 0.89152 1.23512 0.88191 0.95012 0.96181 1.89122 1.35038 1.73925 1.31372 1.24079 1.00263 0.97198 0.83463 1.22094 0.89383 0.94390 0.91953 0.88987 1.44831 1.11603 1.72860 1.08594 1.17512 0.93310 0.91493 0.83211 1.20168 0.95605 1.17043 0.96779 1.20382 0.97115 0.95414 0.93007 1.20040 0.91204 1.13718 1.00748 1.18799 0.87596 0.90260 0.89065 1.83585 1.19341 1.72803 1.36499 1.20746 0.86540 1.40788 0.98180 0.87750 1.24462 0.93980 0.95638 0.99955 1.69646 1.03028 1.41867 1.37530 0.86187 0.77746 0.79709 0.83306 1.19913 1.18324 1.20867 1.20599 0.99651 1.15699 0.95310 0.91173 0.91938 0.92052 0.89119 0.92077 0.88704 0.91587 0.76192 0.87631 0.87001 0.86910 0.91146 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.79 37.16 0.29 -1.09 16 2 C -0.13 -1.28 3.72 -89.05 -0.33 -1.61 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.05 0.46 7.18 37.93 0.27 0.73 16 5 O -0.38 -4.65 11.65 -35.23 -0.41 -5.07 16 6 C 0.03 0.34 7.35 37.93 0.28 0.62 16 7 C 0.13 1.53 3.05 -66.37 -0.20 1.33 16 8 H 0.09 1.10 6.61 -51.93 -0.34 0.76 16 9 N -0.74 -10.67 4.82 -50.67 -0.24 -10.91 16 10 C 0.25 4.40 6.65 -83.81 -0.56 3.84 16 11 C -0.27 -4.57 9.22 -39.33 -0.36 -4.94 16 12 C -0.04 -0.69 10.03 -39.64 -0.40 -1.09 16 13 C -0.24 -4.77 9.99 -39.35 -0.39 -5.16 16 14 C 0.20 4.57 6.65 -39.14 -0.26 4.31 16 15 O -0.22 -5.79 8.58 0.05 0.00 -5.79 16 16 C -0.39 -10.93 9.94 30.89 0.31 -10.62 16 17 H 0.11 3.01 5.43 -52.49 -0.29 2.72 16 18 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 19 N -0.88 -25.50 13.96 55.48 0.77 -24.72 16 20 Si 0.90 21.79 28.62 -169.99 -4.86 16.93 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.29 -6.22 9.01 -39.20 -0.35 -6.57 16 25 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.59 6.99 -51.93 -0.36 0.22 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.56 7.83 -51.93 -0.41 0.16 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.40 5.51 5.82 -40.82 -0.24 5.27 16 33 H 0.11 1.51 6.28 -52.49 -0.33 1.18 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.13 2.94 5.63 -52.48 -0.30 2.65 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -29.89 302.41 -6.74 -36.63 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.75 Total: 6.97 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -1.81 Total: -18.59 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.53 Total: -35.63 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.41 Total: -10.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.89 -6.74 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688045141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.487 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds