Wall clock time and date at job start Mon Mar 30 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.56342 * 2 1 4 4 C 1.54479 * 110.50951 * 237.31955 * 2 1 3 5 5 O 1.44421 * 104.80404 * 217.37738 * 4 2 1 6 6 C 1.44424 * 105.27402 * 40.51441 * 5 4 2 7 7 C 1.54474 * 104.80166 * 319.48740 * 6 5 4 8 8 H 1.09001 * 110.51135 * 265.19713 * 7 6 5 9 9 N 1.46498 * 110.50895 * 142.62554 * 7 6 5 10 10 C 1.39670 * 120.00189 * 86.45272 * 9 7 6 11 11 C 1.39012 * 120.04143 * 359.97438 * 10 9 7 12 12 C 1.38141 * 120.06543 * 179.97438 * 11 10 9 13 13 C 1.38182 * 120.14147 * 0.02562 * 12 11 10 14 14 C 1.38910 * 120.07836 * 0.02562 * 13 12 11 15 15 O 1.35752 * 120.03259 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00201 * 185.51713 * 15 14 13 17 17 H 1.07994 * 120.00203 * 354.91911 * 16 15 14 18 18 C 1.38656 * 119.99650 * 174.92178 * 16 15 14 19 19 N 1.31560 * 119.99604 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00384 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46912 * 270.00338 * 20 18 16 22 22 H 1.48504 * 109.47026 * 29.99537 * 20 18 16 23 23 H 1.48494 * 109.47404 * 150.00130 * 20 18 16 24 24 C 1.38757 * 120.04343 * 180.31252 * 10 9 7 25 25 H 1.08998 * 109.47011 * 297.32278 * 1 2 3 26 26 H 1.08999 * 109.47226 * 57.32006 * 1 2 3 27 27 H 1.09005 * 109.47182 * 177.32076 * 1 2 3 28 28 H 1.09003 * 110.37083 * 98.54714 * 4 2 1 29 29 H 1.08994 * 110.46788 * 336.25881 * 4 2 1 30 30 H 1.09006 * 110.36801 * 200.65612 * 6 5 4 31 31 H 1.08996 * 110.37203 * 78.32432 * 6 5 4 32 32 H 0.96998 * 120.00006 * 266.45274 * 9 7 6 33 33 H 1.08000 * 119.96546 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.93219 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.95845 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00089 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.06720 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2178 5 8 3.2398 -1.4714 -0.7239 6 6 2.8756 -1.9423 0.5920 7 6 2.0714 -0.7814 1.2180 8 1 2.7215 -0.1486 1.8221 9 7 0.9661 -1.3006 2.0273 10 6 1.1799 -1.6414 3.3649 11 6 2.4413 -1.4887 3.9288 12 6 2.6532 -1.8251 5.2518 13 6 1.6130 -2.3146 6.0185 14 6 0.3504 -2.4705 5.4606 15 8 -0.6707 -2.9520 6.2145 16 6 -1.8393 -3.1866 5.5842 17 1 -1.9566 -2.9149 4.5456 18 6 -2.8903 -3.7766 6.2695 19 7 -4.0304 -4.0060 5.6543 20 14 -2.6876 -4.2459 8.0662 21 1 -2.1728 -5.6357 8.1597 22 1 -1.7270 -3.3176 8.7149 23 1 -4.0016 -4.1575 8.7522 24 6 0.1353 -2.1393 4.1304 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5549 -0.8650 27 1 -0.3634 -1.0266 -0.0480 28 1 2.3465 -0.0939 -2.0178 29 1 1.3293 -1.4969 -1.5720 30 1 3.7689 -2.1468 1.1824 31 1 2.2563 -2.8361 0.5173 32 1 0.0858 -1.4077 1.6344 33 1 3.2562 -1.1060 3.3323 34 1 3.6340 -1.7053 5.6879 35 1 1.7819 -2.5763 7.0526 36 1 -4.7658 -4.4184 6.1338 37 1 -0.8443 -2.2644 3.6931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688045141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:14 Heat of formation + Delta-G solvation = -56.484765 kcal Electronic energy + Delta-G solvation = -19616.658193 eV Core-core repulsion = 16552.128107 eV Total energy + Delta-G solvation = -3064.530086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24183 -40.51234 -38.54683 -36.18489 -34.43433 -33.64701 -31.27655 -30.19736 -28.67095 -27.34217 -27.06385 -23.94633 -23.35288 -22.60509 -20.71879 -19.78440 -19.25355 -17.85075 -17.23996 -16.75906 -16.72421 -16.34439 -15.86887 -15.71009 -15.62609 -15.35870 -14.75841 -14.45859 -14.08828 -13.98665 -13.76045 -13.55273 -13.29015 -12.95589 -12.62312 -12.57415 -12.29051 -12.06391 -12.02550 -11.87355 -11.63582 -11.37984 -11.04057 -10.85298 -10.64253 -9.19064 -8.48664 -8.29508 -6.20952 0.72978 0.86277 1.31947 1.36543 1.53006 2.29151 2.38134 2.82301 3.09674 3.15905 3.24541 3.43155 3.74684 3.87326 4.10246 4.20320 4.23664 4.40739 4.43104 4.57429 4.60648 4.65330 4.71633 4.77334 4.82573 4.94316 5.00015 5.03890 5.11477 5.22780 5.41666 5.45362 5.71920 5.75293 5.84556 5.90206 6.16193 6.56071 6.76448 6.86593 7.63614 8.63048 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.004703 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.775716 B = 5952.369925 C = 6665.253204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 H 0.108 0.892 4 C 0.045 3.955 5 O -0.390 6.390 6 C 0.031 3.969 7 C 0.124 3.876 8 H 0.101 0.899 9 N -0.736 5.736 10 C 0.250 3.750 11 C -0.257 4.257 12 C -0.026 4.026 13 C -0.249 4.249 14 C 0.158 3.842 15 O -0.246 6.246 16 C -0.396 4.396 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.263 1.263 23 H -0.267 1.267 24 C -0.310 4.310 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.400 0.600 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.284 0.716 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.542 8.144 -10.501 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 H 0.126 0.874 4 C -0.031 4.031 5 O -0.308 6.308 6 C -0.048 4.048 7 C 0.018 3.982 8 H 0.119 0.881 9 N -0.369 5.369 10 C 0.147 3.853 11 C -0.279 4.279 12 C -0.045 4.045 13 C -0.270 4.270 14 C 0.108 3.892 15 O -0.153 6.153 16 C -0.472 4.472 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.188 1.188 23 H -0.192 1.192 24 C -0.333 4.333 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.684 8.056 -10.473 19.022 hybrid contribution -1.330 -0.512 0.430 1.489 sum 12.354 7.544 -10.044 17.619 Atomic orbital electron populations 1.21740 0.93764 1.01987 1.03105 1.22741 0.97183 1.01044 0.93492 0.87370 1.23690 0.87547 0.95283 0.96617 1.89116 1.36166 1.74232 1.31291 1.24006 1.00307 0.96615 0.83849 1.22323 0.88656 0.94698 0.92550 0.88071 1.44977 1.12651 1.71808 1.07512 1.17603 0.92946 0.90373 0.84377 1.20645 0.95609 1.14689 0.97005 1.20892 0.98016 0.92819 0.92736 1.20329 0.90582 1.14386 1.01715 1.19398 0.88226 0.91505 0.90022 1.83527 1.19405 1.75257 1.37097 1.20689 0.87897 1.41117 0.97513 0.90302 1.25267 0.93598 0.95748 1.04241 1.69729 1.03909 1.43649 1.39303 0.85227 0.78108 0.79337 0.78112 1.19131 1.18750 1.19208 1.20554 0.99781 1.17456 0.95544 0.92505 0.89931 0.92877 0.86805 0.92016 0.87906 0.93002 0.76114 0.83975 0.82471 0.86095 0.90672 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 7.79 71.98 0.56 -1.95 16 2 C -0.13 -2.06 3.72 -9.78 -0.04 -2.10 16 3 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.05 0.74 7.18 72.48 0.52 1.26 16 5 O -0.39 -8.58 11.65 -148.98 -1.74 -10.32 16 6 C 0.03 0.67 7.35 72.48 0.53 1.20 16 7 C 0.12 2.60 3.05 46.00 0.14 2.74 16 8 H 0.10 1.99 6.61 -2.39 -0.02 1.98 16 9 N -0.74 -20.27 4.82 -314.23 -1.51 -21.79 16 10 C 0.25 8.71 6.65 38.20 0.25 8.96 16 11 C -0.26 -7.68 9.22 22.43 0.21 -7.48 16 12 C -0.03 -0.80 10.03 22.23 0.22 -0.58 16 13 C -0.25 -9.79 9.99 22.42 0.22 -9.56 16 14 C 0.16 7.60 6.65 22.56 0.15 7.75 16 15 O -0.25 -13.66 8.58 -22.73 -0.20 -13.85 16 16 C -0.40 -23.70 9.94 67.92 0.68 -23.02 16 17 H 0.08 4.95 5.43 -2.91 -0.02 4.94 16 18 C 0.01 0.55 5.49 84.83 0.47 1.02 16 19 N -0.92 -55.73 13.96 21.61 0.30 -55.42 16 20 Si 0.97 46.10 28.62 68.60 1.96 48.07 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.31 -13.82 9.01 22.52 0.20 -13.62 16 25 H 0.06 1.12 7.73 -2.39 -0.02 1.10 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.98 6.99 -2.38 -0.02 0.96 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.01 7.83 -2.39 -0.02 0.99 16 30 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 1.27 8.06 -2.39 -0.02 1.26 16 32 H 0.40 11.08 5.82 -92.71 -0.54 10.54 16 33 H 0.14 3.28 6.28 -2.91 -0.02 3.26 16 34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.10 5.08 5.63 -2.91 -0.02 5.06 16 Total: -1.00 -67.89 302.41 3.49 -64.41 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.55 Total: 24.29 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 4.12 Total: -35.38 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.21 Total: -77.21 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.93 Total: -24.17 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.96 Total: 48.07 kcal Total: -67.89 3.49 -64.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688045141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds