Wall clock time and date at job start Mon Mar 30 2020 06:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.46245 * 2 1 4 4 C 1.54479 * 110.62710 * 237.31273 * 2 1 3 5 5 O 1.44427 * 104.80102 * 265.27732 * 4 2 1 6 6 C 1.44419 * 105.27909 * 319.48938 * 5 4 2 7 7 C 1.54477 * 104.80509 * 40.51362 * 6 5 4 8 8 H 1.08999 * 110.63153 * 94.72180 * 7 6 5 9 9 N 1.46504 * 110.51526 * 217.37986 * 7 6 5 10 10 C 1.39666 * 119.99590 * 269.64414 * 9 7 6 11 11 C 1.39006 * 120.04351 * 359.97438 * 10 9 7 12 12 C 1.38150 * 120.06577 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13818 * 0.02562 * 12 11 10 14 14 C 1.38916 * 120.08346 * 359.97438 * 13 12 11 15 15 O 1.35745 * 120.03151 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99974 * 185.51784 * 15 14 13 17 17 H 1.08004 * 120.00018 * 354.92547 * 16 15 14 18 18 C 1.38650 * 120.00039 * 174.92366 * 16 15 14 19 19 N 1.31557 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99808 * 179.72569 * 18 16 15 21 21 H 1.48509 * 109.47073 * 180.27522 * 20 18 16 22 22 H 1.48503 * 109.47176 * 300.27184 * 20 18 16 23 23 H 1.48495 * 109.47494 * 60.27580 * 20 18 16 24 24 C 1.38756 * 120.03833 * 180.27462 * 10 9 7 25 25 H 1.08998 * 109.47297 * 297.40248 * 1 2 3 26 26 H 1.08999 * 109.46731 * 57.39674 * 1 2 3 27 27 H 1.08993 * 109.47284 * 177.39374 * 1 2 3 28 28 H 1.08997 * 110.37801 * 24.10979 * 4 2 1 29 29 H 1.08998 * 110.36955 * 146.34132 * 4 2 1 30 30 H 1.08999 * 110.37250 * 281.68220 * 6 5 4 31 31 H 1.09006 * 110.37124 * 159.34277 * 6 5 4 32 32 H 0.96998 * 120.00217 * 89.63566 * 9 7 6 33 33 H 1.08005 * 119.96676 * 0.02805 * 11 10 9 34 34 H 1.07992 * 119.92971 * 180.02562 * 12 11 10 35 35 H 1.07997 * 119.95630 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99630 * 359.72045 * 19 18 16 37 37 H 1.07998 * 120.07274 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 -1.2168 5 8 2.3118 -2.1166 -0.7218 6 6 2.8786 -1.9395 0.5947 7 6 2.0713 -0.7799 1.2192 8 1 1.2489 -1.1653 1.8219 9 7 2.9431 0.0747 2.0292 10 6 3.1212 -0.1974 3.3875 11 6 2.4714 -1.2785 3.9717 12 6 2.6469 -1.5478 5.3153 13 6 3.4679 -0.7438 6.0826 14 6 4.1201 0.3382 5.5049 15 8 4.9260 1.1277 6.2597 16 6 5.4375 2.2252 5.6666 17 1 5.2674 2.3992 4.6143 18 6 6.1817 3.1305 6.4075 19 7 6.3893 2.9184 7.6891 20 14 6.8968 4.6471 5.5839 21 1 7.6503 5.4449 6.5845 22 1 7.8124 4.2316 4.4911 23 1 5.7963 5.4704 5.0216 24 6 3.9422 0.6147 4.1568 25 1 -0.3634 0.4730 0.9123 26 1 -0.3633 0.5537 -0.8657 27 1 -0.3633 -1.0265 -0.0467 28 1 1.3351 -0.7988 -2.0177 29 1 3.0039 -0.3341 -1.5693 30 1 3.9325 -1.6716 0.5211 31 1 2.7572 -2.8475 1.1854 32 1 3.3966 0.8294 1.6222 33 1 1.8288 -1.9086 3.3746 34 1 2.1413 -2.3885 5.7668 35 1 3.6026 -0.9567 7.1327 36 1 6.0182 2.1308 8.1167 37 1 4.4447 1.4579 3.7064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688045143.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:16 Heat of formation + Delta-G solvation = -72.907235 kcal Electronic energy + Delta-G solvation = -19496.146336 eV Core-core repulsion = 16430.904118 eV Total energy + Delta-G solvation = -3065.242218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19330 -40.51347 -38.60240 -36.04221 -34.28589 -33.78757 -31.29645 -30.11876 -28.67133 -27.20064 -26.84598 -23.87889 -23.53030 -22.27222 -21.45307 -20.11255 -19.02627 -17.69090 -17.22758 -16.99461 -16.61480 -16.27120 -15.97568 -15.70122 -15.53667 -15.49046 -14.71738 -14.56842 -14.26865 -13.79074 -13.48274 -13.31575 -12.94371 -12.92836 -12.59733 -12.37097 -12.31569 -12.10725 -11.94177 -11.83541 -11.76071 -11.36876 -11.04143 -10.75941 -10.59293 -9.21688 -8.92761 -8.34787 -6.23214 0.67703 0.81434 1.47689 1.60863 1.78049 2.31462 2.37369 2.88680 3.07973 3.17803 3.39672 3.42471 3.78469 3.86825 4.05125 4.12951 4.20784 4.35301 4.48214 4.50787 4.62150 4.69654 4.73207 4.77434 4.80752 4.93974 4.99796 5.01027 5.08822 5.25661 5.29352 5.35793 5.69787 5.71592 5.79578 5.91707 6.25975 6.50160 6.75069 6.89102 7.66612 8.52219 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.004695 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.351186 B = 5962.791591 C = 6753.463913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.046 3.954 5 O -0.389 6.389 6 C 0.030 3.970 7 C 0.126 3.874 8 H 0.099 0.901 9 N -0.732 5.732 10 C 0.256 3.744 11 C -0.262 4.262 12 C -0.025 4.025 13 C -0.261 4.261 14 C 0.154 3.846 15 O -0.252 6.252 16 C -0.485 4.485 17 H 0.090 0.910 18 C -0.046 4.046 19 N -0.919 5.919 20 Si 1.145 2.855 21 H -0.273 1.273 22 H -0.261 1.261 23 H -0.260 1.260 24 C -0.311 4.311 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.260 0.740 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 -6.340 -18.081 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 H 0.112 0.888 4 C -0.031 4.031 5 O -0.307 6.307 6 C -0.048 4.048 7 C 0.020 3.980 8 H 0.117 0.883 9 N -0.363 5.363 10 C 0.153 3.847 11 C -0.284 4.284 12 C -0.043 4.043 13 C -0.281 4.281 14 C 0.103 3.897 15 O -0.160 6.160 16 C -0.561 4.561 17 H 0.107 0.893 18 C -0.242 4.242 19 N -0.554 5.554 20 Si 0.961 3.039 21 H -0.198 1.198 22 H -0.185 1.185 23 H -0.185 1.185 24 C -0.335 4.335 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.237 0.763 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.287 -5.341 -17.772 21.218 hybrid contribution -0.360 -0.905 0.237 1.002 sum -10.647 -6.245 -17.536 21.444 Atomic orbital electron populations 1.21771 0.92319 1.02701 1.02741 1.22770 0.98312 1.00347 0.93533 0.88766 1.23649 1.00981 0.81952 0.96493 1.89120 1.83253 1.27282 1.31063 1.23990 0.97169 0.99788 0.83890 1.22431 0.92628 0.90642 0.92315 0.88307 1.44662 1.52697 1.33747 1.05179 1.17527 0.91039 0.92022 0.84127 1.20609 1.09665 1.02088 0.96045 1.20848 0.93714 0.96772 0.93005 1.20288 1.07390 0.99848 1.00618 1.19534 0.88724 0.90804 0.90605 1.83655 1.56906 1.34907 1.40508 1.22554 1.36044 1.00306 0.97176 0.89292 1.28380 0.95546 1.04635 0.95593 1.70708 1.43835 1.29349 1.11483 0.82588 0.76690 0.70083 0.74565 1.19818 1.18522 1.18501 1.20516 1.11910 1.06857 0.94189 0.92680 0.90545 0.91895 0.86992 0.91645 0.92525 0.88275 0.76321 0.83956 0.82795 0.87397 0.93204 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 71.98 0.64 -1.21 16 2 C -0.13 -2.05 3.47 -9.77 -0.03 -2.08 16 3 H 0.09 1.42 7.70 -2.39 -0.02 1.40 16 4 C 0.05 0.70 7.19 72.48 0.52 1.22 16 5 O -0.39 -8.25 11.65 -148.98 -1.74 -9.98 16 6 C 0.03 0.63 7.35 72.48 0.53 1.16 16 7 C 0.13 2.56 2.84 46.01 0.13 2.69 16 8 H 0.10 2.01 5.99 -2.39 -0.01 1.99 16 9 N -0.73 -19.16 5.26 -314.20 -1.65 -20.82 16 10 C 0.26 8.89 6.65 38.20 0.25 9.14 16 11 C -0.26 -8.18 9.22 22.43 0.21 -7.97 16 12 C -0.02 -0.83 10.03 22.23 0.22 -0.61 16 13 C -0.26 -11.30 9.99 22.42 0.22 -11.08 16 14 C 0.15 7.85 6.65 22.56 0.15 8.00 16 15 O -0.25 -15.37 9.16 -22.71 -0.21 -15.58 16 16 C -0.48 -28.86 9.49 67.92 0.64 -28.21 16 17 H 0.09 4.94 5.20 -2.91 -0.02 4.92 16 18 C -0.05 -2.66 5.49 84.83 0.47 -2.20 16 19 N -0.92 -58.37 13.70 21.61 0.30 -58.08 16 20 Si 1.15 48.56 29.92 68.60 2.05 50.61 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 C -0.31 -13.83 9.01 22.52 0.20 -13.63 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 1.29 7.87 -2.39 -0.02 1.27 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 31 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.40 9.86 8.39 -92.71 -0.78 9.08 16 33 H 0.14 3.46 6.20 -2.91 -0.02 3.45 16 34 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.26 17.22 7.97 -92.71 -0.74 16.48 16 37 H 0.11 5.20 5.63 -2.91 -0.02 5.18 16 Total: -1.00 -72.47 307.16 3.26 -69.21 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.34 Total: 29.40 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 4.17 Total: -44.77 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.36 Total: -78.89 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.94 Total: -25.56 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Total: -72.47 3.26 -69.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688045143.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.693 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds