Wall clock time and date at job start Mon Mar 30 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00157 * 2 1 4 4 H 1.48507 * 109.46803 * 91.15491 * 3 2 1 5 5 H 1.48493 * 109.47337 * 211.15550 * 3 2 1 6 6 H 1.48500 * 109.46981 * 331.15786 * 3 2 1 7 7 C 1.37875 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00711 * 8.55294 * 7 2 1 9 9 C 1.50708 * 119.99831 * 188.55473 * 7 2 1 10 10 H 1.09000 * 109.46643 * 2.28504 * 9 7 2 11 11 C 1.50702 * 109.46834 * 122.27824 * 9 7 2 12 12 C 1.38242 * 119.99591 * 73.65877 * 11 9 7 13 13 C 1.38235 * 119.99388 * 179.76097 * 12 11 9 14 14 C 1.38238 * 120.00178 * 0.50530 * 13 12 11 15 15 C 1.38238 * 119.99902 * 359.74872 * 14 13 12 16 16 C 1.38229 * 119.99953 * 253.92379 * 11 9 7 17 17 N 1.46898 * 109.47095 * 242.27944 * 9 7 2 18 18 C 1.46845 * 110.99752 * 176.63628 * 17 9 7 19 19 C 1.53042 * 109.52169 * 174.15827 * 18 17 9 20 20 C 1.53121 * 109.27492 * 59.18349 * 19 18 17 21 21 C 1.53123 * 109.16187 * 302.34507 * 20 19 18 22 22 H 1.08997 * 109.50166 * 297.67371 * 21 20 19 23 23 F 1.39896 * 109.50298 * 177.59524 * 21 20 19 24 24 C 1.46848 * 110.99929 * 52.42996 * 17 9 7 25 25 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99983 * 359.97438 * 12 11 9 27 27 H 1.08003 * 119.99968 * 180.22444 * 13 12 11 28 28 H 1.07999 * 119.99812 * 179.72078 * 14 13 12 29 29 H 1.08003 * 119.99730 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.00528 * 0.02562 * 16 11 9 31 31 H 1.08994 * 109.46460 * 294.17731 * 18 17 9 32 32 H 1.09002 * 109.46167 * 54.14998 * 18 17 9 33 33 H 1.08994 * 109.50527 * 179.11837 * 19 18 17 34 34 H 1.08990 * 109.50454 * 299.20560 * 19 18 17 35 35 H 1.09005 * 109.52540 * 62.24833 * 20 19 18 36 36 H 1.09001 * 109.52460 * 182.37309 * 20 19 18 37 37 H 1.08998 * 109.46064 * 305.85625 * 24 17 9 38 38 H 1.08997 * 109.46333 * 65.82342 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5211 2.0322 1.3999 5 1 3.5343 1.4474 -0.7243 6 1 1.4346 2.6596 -0.6754 7 6 2.0045 -1.1941 0.0005 8 1 1.4736 -2.1242 -0.1381 9 6 3.4990 -1.2013 0.1947 10 1 3.8490 -0.1820 0.3579 11 6 3.8459 -2.0492 1.3913 12 6 3.7619 -3.4267 1.3100 13 6 4.0849 -4.2046 2.4061 14 6 4.4819 -3.6047 3.5865 15 6 4.5609 -2.2271 3.6693 16 6 4.2429 -1.4494 2.5717 17 7 4.1456 -1.7554 -1.0023 18 6 5.6082 -1.7046 -0.8815 19 6 6.2451 -2.4191 -2.0756 20 6 5.7972 -1.7362 -3.3709 21 6 4.2681 -1.7599 -3.4488 22 1 3.9214 -2.7927 -3.4817 23 9 3.8488 -1.0894 -4.6028 24 6 3.6886 -1.0646 -2.2148 25 1 -0.4850 0.8401 0.0004 26 1 3.4472 -3.8950 0.3892 27 1 4.0227 -5.2809 2.3415 28 1 4.7299 -4.2124 4.4442 29 1 4.8706 -1.7585 4.5918 30 1 4.3041 -0.3731 2.6366 31 1 5.9352 -0.6650 -0.8636 32 1 5.9137 -2.1972 0.0416 33 1 7.3307 -2.3676 -1.9938 34 1 5.9299 -3.4624 -2.0858 35 1 6.1463 -0.7036 -3.3779 36 1 6.2147 -2.2677 -4.2261 37 1 2.5999 -1.0923 -2.2601 38 1 4.0246 -0.0280 -2.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689880303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:00 Heat of formation + Delta-G solvation = -29.020689 kcal Electronic energy + Delta-G solvation = -20509.760267 eV Core-core repulsion = 17458.793903 eV Total energy + Delta-G solvation = -3050.966365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.19333 -39.06338 -37.58763 -34.07525 -32.09001 -30.49440 -30.20336 -29.55431 -27.10045 -24.04127 -22.54006 -22.04448 -21.80432 -19.96472 -19.34850 -17.06820 -16.31695 -15.85982 -15.49064 -14.99095 -14.55675 -14.39283 -14.23800 -14.04699 -13.64185 -12.97303 -12.94355 -12.72199 -12.51566 -12.27996 -12.10061 -11.93758 -11.65865 -11.15351 -11.03227 -10.81764 -10.62282 -10.42369 -10.16221 -10.07297 -9.88915 -9.70004 -9.55093 -8.74242 -8.25260 -7.89293 -7.43437 -6.27935 -4.26219 2.06243 2.11385 3.13819 3.21357 3.24662 4.22441 4.37117 4.63241 4.89090 5.06325 5.07089 5.16972 5.38283 5.49582 5.50318 5.54423 5.67190 5.79272 5.86639 5.91622 6.01687 6.05465 6.15232 6.23456 6.25921 6.31421 6.37102 6.47255 6.60977 6.68600 6.76197 6.89366 7.10987 7.17691 7.31480 7.45077 7.72142 7.92575 7.98414 8.44072 8.84036 9.33587 10.83852 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.009935 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.758703 B = 2817.581932 C = 4118.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.080 3.920 3 Si 0.864 3.136 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.085 0.915 9 C 0.213 3.787 10 H 0.017 0.983 11 C -0.027 4.027 12 C -0.092 4.092 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.125 4.125 16 C -0.133 4.133 17 N -0.526 5.526 18 C 0.044 3.956 19 C -0.110 4.110 20 C -0.144 4.144 21 C 0.091 3.909 22 H 0.088 0.912 23 F -0.220 7.220 24 C 0.041 3.959 25 H 0.268 0.732 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.362 -4.235 -0.258 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.103 0.897 9 C 0.108 3.892 10 H 0.034 0.966 11 C -0.028 4.028 12 C -0.111 4.111 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.143 4.143 16 C -0.151 4.151 17 N -0.251 5.251 18 C -0.084 4.084 19 C -0.148 4.148 20 C -0.182 4.182 21 C 0.054 3.946 22 H 0.106 0.894 23 F -0.201 7.201 24 C -0.088 4.088 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.023 -4.575 -0.329 11.939 hybrid contribution 0.532 1.936 0.131 2.012 sum 11.555 -2.639 -0.198 11.854 Atomic orbital electron populations 1.69885 1.06161 1.27322 1.48274 1.25068 0.94721 0.98638 0.94060 0.87088 0.80437 0.84431 0.78906 1.19994 1.19010 1.20994 1.20754 0.88082 0.95216 1.49431 0.89736 1.18778 0.95425 0.90717 0.84250 0.96556 1.20178 0.92729 0.94392 0.95508 1.20969 0.98471 0.93411 0.98224 1.21081 1.00850 0.99103 0.93688 1.20878 1.03305 0.94664 0.97649 1.20916 1.01529 0.93964 0.97888 1.20973 1.01372 0.99248 0.93553 1.62159 1.03263 1.56603 1.03064 1.22149 0.90183 0.97945 0.98138 1.21488 0.99248 1.00406 0.93614 1.22165 0.95356 1.01772 0.98877 1.21650 0.94145 0.96763 0.82015 0.89364 1.92759 1.91801 1.83333 1.52198 1.22434 1.03462 0.94585 0.88285 0.92210 0.85707 0.87175 0.87396 0.87272 0.87342 0.96056 0.90805 0.91773 0.90933 0.91634 0.91469 0.87294 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 3 Si 0.86 20.62 26.76 -169.99 -4.55 16.07 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.12 5.75 56.52 0.33 -5.79 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.50 -12.97 7.07 -34.44 -0.24 -13.21 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.21 4.75 1.62 -70.01 -0.11 4.64 16 10 H 0.02 0.39 4.59 -51.93 -0.24 0.15 16 11 C -0.03 -0.55 3.55 -104.62 -0.37 -0.93 16 12 C -0.09 -1.75 9.06 -39.58 -0.36 -2.11 16 13 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 14 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 16 15 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 16 C -0.13 -2.54 9.67 -39.59 -0.38 -2.93 16 17 N -0.53 -10.35 4.01 -229.48 -0.92 -11.27 16 18 C 0.04 0.74 5.28 -3.83 -0.02 0.72 16 19 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 20 C -0.14 -2.03 5.74 -26.61 -0.15 -2.18 16 21 C 0.09 1.53 4.04 -26.65 -0.11 1.42 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 F -0.22 -3.99 17.09 2.25 0.04 -3.95 16 24 C 0.04 0.82 4.71 -3.83 -0.02 0.80 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.12 2.40 7.92 -52.49 -0.42 1.98 16 27 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.11 2.03 7.99 -52.49 -0.42 1.61 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 1.23 6.87 -51.93 -0.36 0.88 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 2.49 6.64 -51.93 -0.35 2.14 16 38 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -27.83 304.74 -8.87 -36.70 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.58 Total: 3.67 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -3.22 Total: -21.06 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.15 Total: -36.02 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.55 Total: 16.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.83 -8.87 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.678 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds