Wall clock time and date at job start Mon Mar 30 2020 07:24:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00157 * 2 1
4 4 H 1.48507 * 109.46803 * 91.15491 * 3 2 1
5 5 H 1.48493 * 109.47337 * 211.15550 * 3 2 1
6 6 H 1.48500 * 109.46981 * 331.15786 * 3 2 1
7 7 C 1.37875 * 119.99697 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00711 * 8.55294 * 7 2 1
9 9 C 1.50708 * 119.99831 * 188.55473 * 7 2 1
10 10 H 1.09000 * 109.46643 * 2.28504 * 9 7 2
11 11 C 1.50702 * 109.46834 * 122.27824 * 9 7 2
12 12 C 1.38242 * 119.99591 * 73.65877 * 11 9 7
13 13 C 1.38235 * 119.99388 * 179.76097 * 12 11 9
14 14 C 1.38238 * 120.00178 * 0.50530 * 13 12 11
15 15 C 1.38238 * 119.99902 * 359.74872 * 14 13 12
16 16 C 1.38229 * 119.99953 * 253.92379 * 11 9 7
17 17 N 1.46898 * 109.47095 * 242.27944 * 9 7 2
18 18 C 1.46845 * 110.99752 * 176.63628 * 17 9 7
19 19 C 1.53042 * 109.52169 * 174.15827 * 18 17 9
20 20 C 1.53121 * 109.27492 * 59.18349 * 19 18 17
21 21 C 1.53123 * 109.16187 * 302.34507 * 20 19 18
22 22 H 1.08997 * 109.50166 * 297.67371 * 21 20 19
23 23 F 1.39896 * 109.50298 * 177.59524 * 21 20 19
24 24 C 1.46848 * 110.99929 * 52.42996 * 17 9 7
25 25 H 0.97001 * 119.99805 * 359.97438 * 1 2 3
26 26 H 1.07998 * 119.99983 * 359.97438 * 12 11 9
27 27 H 1.08003 * 119.99968 * 180.22444 * 13 12 11
28 28 H 1.07999 * 119.99812 * 179.72078 * 14 13 12
29 29 H 1.08003 * 119.99730 * 179.97438 * 15 14 13
30 30 H 1.07998 * 120.00528 * 0.02562 * 16 11 9
31 31 H 1.08994 * 109.46460 * 294.17731 * 18 17 9
32 32 H 1.09002 * 109.46167 * 54.14998 * 18 17 9
33 33 H 1.08994 * 109.50527 * 179.11837 * 19 18 17
34 34 H 1.08990 * 109.50454 * 299.20560 * 19 18 17
35 35 H 1.09005 * 109.52540 * 62.24833 * 20 19 18
36 36 H 1.09001 * 109.52460 * 182.37309 * 20 19 18
37 37 H 1.08998 * 109.46064 * 305.85625 * 24 17 9
38 38 H 1.08997 * 109.46333 * 65.82342 * 24 17 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5211 2.0322 1.3999
5 1 3.5343 1.4474 -0.7243
6 1 1.4346 2.6596 -0.6754
7 6 2.0045 -1.1941 0.0005
8 1 1.4736 -2.1242 -0.1381
9 6 3.4990 -1.2013 0.1947
10 1 3.8490 -0.1820 0.3579
11 6 3.8459 -2.0492 1.3913
12 6 3.7619 -3.4267 1.3100
13 6 4.0849 -4.2046 2.4061
14 6 4.4819 -3.6047 3.5865
15 6 4.5609 -2.2271 3.6693
16 6 4.2429 -1.4494 2.5717
17 7 4.1456 -1.7554 -1.0023
18 6 5.6082 -1.7046 -0.8815
19 6 6.2451 -2.4191 -2.0756
20 6 5.7972 -1.7362 -3.3709
21 6 4.2681 -1.7599 -3.4488
22 1 3.9214 -2.7927 -3.4817
23 9 3.8488 -1.0894 -4.6028
24 6 3.6886 -1.0646 -2.2148
25 1 -0.4850 0.8401 0.0004
26 1 3.4472 -3.8950 0.3892
27 1 4.0227 -5.2809 2.3415
28 1 4.7299 -4.2124 4.4442
29 1 4.8706 -1.7585 4.5918
30 1 4.3041 -0.3731 2.6366
31 1 5.9352 -0.6650 -0.8636
32 1 5.9137 -2.1972 0.0416
33 1 7.3307 -2.3676 -1.9938
34 1 5.9299 -3.4624 -2.0858
35 1 6.1463 -0.7036 -3.3779
36 1 6.2147 -2.2677 -4.2261
37 1 2.5999 -1.0923 -2.2601
38 1 4.0246 -0.0280 -2.1907
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689880303.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:24:00
Heat of formation + Delta-G solvation = -44.561132 kcal
Electronic energy + Delta-G solvation = -20510.434151 eV
Core-core repulsion = 17458.793903 eV
Total energy + Delta-G solvation = -3051.640249 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.138 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-48.62379 -40.54974 -38.98077 -35.69035 -33.96513 -31.89819 -31.57882 -30.96773
-28.85931 -25.66571 -23.93102 -23.52075 -23.20191 -21.42378 -20.81822 -19.09026
-17.70533 -17.38354 -16.88819 -16.52396 -16.13121 -15.90900 -15.63265 -15.51810
-15.12568 -14.85590 -14.40399 -14.10823 -13.91374 -13.75789 -13.59701 -13.32899
-13.19861 -12.92893 -12.64592 -12.20205 -12.00182 -11.93477 -11.79855 -11.60121
-11.49610 -11.33119 -11.07869 -10.81782 -9.62845 -9.34667 -9.06644 -8.39365
-6.39303 0.66976 0.72734 1.19773 1.23253 1.29505 2.20289 2.78332
3.16396 3.18925 3.62210 3.77545 3.85881 3.99603 4.17124 4.18721
4.28014 4.35807 4.43036 4.46091 4.55730 4.63604 4.78387 4.82019
4.86698 4.91735 4.96205 5.04139 5.08410 5.21793 5.28165 5.36386
5.39518 5.45163 5.75055 5.79361 5.97844 6.08353 6.26768 6.37325
6.58913 6.70396 7.23540 8.76958
Molecular weight = 263.14amu
Principal moments of inertia in cm(-1)
A = 0.014147 B = 0.009935 C = 0.006798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1978.758703 B = 2817.581932 C = 4118.123372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.030 3.970
3 Si 0.918 3.082
4 H -0.265 1.265
5 H -0.257 1.257
6 H -0.285 1.285
7 C -0.486 4.486
8 H 0.042 0.958
9 C 0.219 3.781
10 H 0.004 0.996
11 C -0.055 4.055
12 C -0.107 4.107
13 C -0.126 4.126
14 C -0.137 4.137
15 C -0.122 4.122
16 C -0.152 4.152
17 N -0.525 5.525
18 C 0.044 3.956
19 C -0.101 4.101
20 C -0.136 4.136
21 C 0.093 3.907
22 H 0.097 0.903
23 F -0.228 7.228
24 C 0.043 3.957
25 H 0.268 0.732
26 H 0.112 0.888
27 H 0.140 0.860
28 H 0.147 0.853
29 H 0.140 0.860
30 H 0.104 0.896
31 H 0.015 0.985
32 H 0.076 0.924
33 H 0.097 0.903
34 H 0.079 0.921
35 H 0.064 0.936
36 H 0.097 0.903
37 H 0.069 0.931
38 H 0.014 0.986
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.537 -5.396 0.725 15.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.170 4.170
3 Si 0.743 3.257
4 H -0.190 1.190
5 H -0.181 1.181
6 H -0.211 1.211
7 C -0.525 4.525
8 H 0.060 0.940
9 C 0.113 3.887
10 H 0.022 0.978
11 C -0.056 4.056
12 C -0.125 4.125
13 C -0.144 4.144
14 C -0.154 4.154
15 C -0.140 4.140
16 C -0.171 4.171
17 N -0.250 5.250
18 C -0.084 4.084
19 C -0.138 4.138
20 C -0.174 4.174
21 C 0.056 3.944
22 H 0.115 0.885
23 F -0.209 7.209
24 C -0.085 4.085
25 H 0.077 0.923
26 H 0.130 0.870
27 H 0.158 0.842
28 H 0.165 0.835
29 H 0.158 0.842
30 H 0.123 0.877
31 H 0.033 0.967
32 H 0.095 0.905
33 H 0.115 0.885
34 H 0.098 0.902
35 H 0.083 0.917
36 H 0.115 0.885
37 H 0.087 0.913
38 H 0.033 0.967
Dipole moment (debyes) X Y Z Total
from point charges 14.229 -5.747 0.651 15.359
hybrid contribution -0.429 2.154 -0.114 2.199
sum 13.799 -3.593 0.537 14.269
Atomic orbital electron populations
1.70012 1.07776 1.28005 1.51315 1.25718 0.95252 1.01790 0.94262
0.86209 0.79477 0.80632 0.79350 1.18974 1.18115 1.21067 1.20827
0.90382 0.93306 1.48002 0.94000 1.18587 0.92915 0.90954 0.86237
0.97816 1.20059 0.95322 0.94972 0.95211 1.20958 0.99497 0.93069
0.99023 1.21416 0.99436 1.00503 0.93001 1.21350 1.01082 0.94662
0.98356 1.21281 1.00193 0.94482 0.98021 1.21118 1.02348 0.99542
0.94078 1.62025 1.05423 1.55750 1.01796 1.22260 0.87823 0.98195
1.00152 1.21483 1.00858 1.00052 0.91452 1.22146 0.92508 1.02367
1.00382 1.21706 0.96389 0.96337 0.79951 0.88477 1.92745 1.92147
1.83575 1.52421 1.22338 1.01294 0.94495 0.90416 0.92305 0.87025
0.84216 0.83480 0.84182 0.87749 0.96666 0.90542 0.88464 0.90221
0.91747 0.88475 0.91266 0.96743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16
2 C 0.03 1.68 5.46 84.65 0.46 2.14 16
3 Si 0.92 44.12 26.76 68.60 1.84 45.96 16
4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16
5 H -0.26 -11.81 5.75 99.48 0.57 -11.24 16
6 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16
7 C -0.49 -26.89 7.07 25.60 0.18 -26.71 16
8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16
9 C 0.22 10.05 1.62 43.43 0.07 10.12 16
10 H 0.00 0.20 4.59 -2.39 -0.01 0.19 16
11 C -0.05 -2.25 3.55 -19.86 -0.07 -2.32 16
12 C -0.11 -4.01 9.06 22.27 0.20 -3.81 16
13 C -0.13 -3.79 10.05 22.27 0.22 -3.56 16
14 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16
15 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16
16 C -0.15 -5.68 9.67 22.27 0.22 -5.47 16
17 N -0.53 -20.97 4.01 -879.94 -3.53 -24.50 16
18 C 0.04 1.40 5.28 86.33 0.46 1.86 16
19 C -0.10 -2.42 6.09 30.65 0.19 -2.24 16
20 C -0.14 -3.46 5.74 30.68 0.18 -3.29 16
21 C 0.09 3.05 4.04 30.65 0.12 3.18 16
22 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16
23 F -0.23 -8.17 17.09 44.97 0.77 -7.40 16
24 C 0.04 1.80 4.71 86.32 0.41 2.20 16
25 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16
26 H 0.11 4.37 7.92 -2.91 -0.02 4.35 16
27 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16
28 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16
29 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16
30 H 0.10 3.87 7.99 -2.91 -0.02 3.85 16
31 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16
32 H 0.08 2.43 6.87 -2.39 -0.02 2.42 16
33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16
36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16
37 H 0.07 3.38 6.64 -2.39 -0.02 3.36 16
38 H 0.01 0.63 7.12 -2.39 -0.02 0.61 16
Total: -1.00 -64.26 304.74 3.35 -60.91
By element:
Atomic # 1 Polarization: 15.70 SS G_CDS: 0.90 Total: 16.60 kcal
Atomic # 6 Polarization: -37.91 SS G_CDS: 3.08 Total: -34.83 kcal
Atomic # 7 Polarization: -78.02 SS G_CDS: -3.23 Total: -81.25 kcal
Atomic # 9 Polarization: -8.17 SS G_CDS: 0.77 Total: -7.40 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 1.84 Total: 45.96 kcal
Total: -64.26 3.35 -60.91 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689880303.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.352 kcal
(2) G-P(sol) polarization free energy of solvation -64.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds