Wall clock time and date at job start Mon Mar 30 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00157 * 2 1 4 4 H 1.48507 * 109.46803 * 91.15491 * 3 2 1 5 5 H 1.48493 * 109.47337 * 211.15550 * 3 2 1 6 6 H 1.48500 * 109.46981 * 331.15786 * 3 2 1 7 7 C 1.37875 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00711 * 8.55294 * 7 2 1 9 9 C 1.50708 * 119.99831 * 188.55473 * 7 2 1 10 10 H 1.09000 * 109.46643 * 2.28504 * 9 7 2 11 11 C 1.50702 * 109.46834 * 122.27824 * 9 7 2 12 12 C 1.38242 * 119.99591 * 73.65877 * 11 9 7 13 13 C 1.38235 * 119.99388 * 179.76097 * 12 11 9 14 14 C 1.38238 * 120.00178 * 0.50530 * 13 12 11 15 15 C 1.38238 * 119.99902 * 359.74872 * 14 13 12 16 16 C 1.38229 * 119.99953 * 253.92379 * 11 9 7 17 17 N 1.46898 * 109.47095 * 242.27944 * 9 7 2 18 18 C 1.46845 * 110.99752 * 176.63628 * 17 9 7 19 19 C 1.53042 * 109.52169 * 174.15827 * 18 17 9 20 20 C 1.53121 * 109.27492 * 59.18349 * 19 18 17 21 21 C 1.53123 * 109.16187 * 302.34507 * 20 19 18 22 22 H 1.08997 * 109.50166 * 297.67371 * 21 20 19 23 23 F 1.39896 * 109.50298 * 177.59524 * 21 20 19 24 24 C 1.46848 * 110.99929 * 52.42996 * 17 9 7 25 25 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99983 * 359.97438 * 12 11 9 27 27 H 1.08003 * 119.99968 * 180.22444 * 13 12 11 28 28 H 1.07999 * 119.99812 * 179.72078 * 14 13 12 29 29 H 1.08003 * 119.99730 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.00528 * 0.02562 * 16 11 9 31 31 H 1.08994 * 109.46460 * 294.17731 * 18 17 9 32 32 H 1.09002 * 109.46167 * 54.14998 * 18 17 9 33 33 H 1.08994 * 109.50527 * 179.11837 * 19 18 17 34 34 H 1.08990 * 109.50454 * 299.20560 * 19 18 17 35 35 H 1.09005 * 109.52540 * 62.24833 * 20 19 18 36 36 H 1.09001 * 109.52460 * 182.37309 * 20 19 18 37 37 H 1.08998 * 109.46064 * 305.85625 * 24 17 9 38 38 H 1.08997 * 109.46333 * 65.82342 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5211 2.0322 1.3999 5 1 3.5343 1.4474 -0.7243 6 1 1.4346 2.6596 -0.6754 7 6 2.0045 -1.1941 0.0005 8 1 1.4736 -2.1242 -0.1381 9 6 3.4990 -1.2013 0.1947 10 1 3.8490 -0.1820 0.3579 11 6 3.8459 -2.0492 1.3913 12 6 3.7619 -3.4267 1.3100 13 6 4.0849 -4.2046 2.4061 14 6 4.4819 -3.6047 3.5865 15 6 4.5609 -2.2271 3.6693 16 6 4.2429 -1.4494 2.5717 17 7 4.1456 -1.7554 -1.0023 18 6 5.6082 -1.7046 -0.8815 19 6 6.2451 -2.4191 -2.0756 20 6 5.7972 -1.7362 -3.3709 21 6 4.2681 -1.7599 -3.4488 22 1 3.9214 -2.7927 -3.4817 23 9 3.8488 -1.0894 -4.6028 24 6 3.6886 -1.0646 -2.2148 25 1 -0.4850 0.8401 0.0004 26 1 3.4472 -3.8950 0.3892 27 1 4.0227 -5.2809 2.3415 28 1 4.7299 -4.2124 4.4442 29 1 4.8706 -1.7585 4.5918 30 1 4.3041 -0.3731 2.6366 31 1 5.9352 -0.6650 -0.8636 32 1 5.9137 -2.1972 0.0416 33 1 7.3307 -2.3676 -1.9938 34 1 5.9299 -3.4624 -2.0858 35 1 6.1463 -0.7036 -3.3779 36 1 6.2147 -2.2677 -4.2261 37 1 2.5999 -1.0923 -2.2601 38 1 4.0246 -0.0280 -2.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689880303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:00 Heat of formation + Delta-G solvation = -44.561132 kcal Electronic energy + Delta-G solvation = -20510.434151 eV Core-core repulsion = 17458.793903 eV Total energy + Delta-G solvation = -3051.640249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.62379 -40.54974 -38.98077 -35.69035 -33.96513 -31.89819 -31.57882 -30.96773 -28.85931 -25.66571 -23.93102 -23.52075 -23.20191 -21.42378 -20.81822 -19.09026 -17.70533 -17.38354 -16.88819 -16.52396 -16.13121 -15.90900 -15.63265 -15.51810 -15.12568 -14.85590 -14.40399 -14.10823 -13.91374 -13.75789 -13.59701 -13.32899 -13.19861 -12.92893 -12.64592 -12.20205 -12.00182 -11.93477 -11.79855 -11.60121 -11.49610 -11.33119 -11.07869 -10.81782 -9.62845 -9.34667 -9.06644 -8.39365 -6.39303 0.66976 0.72734 1.19773 1.23253 1.29505 2.20289 2.78332 3.16396 3.18925 3.62210 3.77545 3.85881 3.99603 4.17124 4.18721 4.28014 4.35807 4.43036 4.46091 4.55730 4.63604 4.78387 4.82019 4.86698 4.91735 4.96205 5.04139 5.08410 5.21793 5.28165 5.36386 5.39518 5.45163 5.75055 5.79361 5.97844 6.08353 6.26768 6.37325 6.58913 6.70396 7.23540 8.76958 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.009935 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.758703 B = 2817.581932 C = 4118.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.030 3.970 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.285 1.285 7 C -0.486 4.486 8 H 0.042 0.958 9 C 0.219 3.781 10 H 0.004 0.996 11 C -0.055 4.055 12 C -0.107 4.107 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.152 4.152 17 N -0.525 5.525 18 C 0.044 3.956 19 C -0.101 4.101 20 C -0.136 4.136 21 C 0.093 3.907 22 H 0.097 0.903 23 F -0.228 7.228 24 C 0.043 3.957 25 H 0.268 0.732 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.104 0.896 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -5.396 0.725 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.170 4.170 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.211 1.211 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.113 3.887 10 H 0.022 0.978 11 C -0.056 4.056 12 C -0.125 4.125 13 C -0.144 4.144 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.171 4.171 17 N -0.250 5.250 18 C -0.084 4.084 19 C -0.138 4.138 20 C -0.174 4.174 21 C 0.056 3.944 22 H 0.115 0.885 23 F -0.209 7.209 24 C -0.085 4.085 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 14.229 -5.747 0.651 15.359 hybrid contribution -0.429 2.154 -0.114 2.199 sum 13.799 -3.593 0.537 14.269 Atomic orbital electron populations 1.70012 1.07776 1.28005 1.51315 1.25718 0.95252 1.01790 0.94262 0.86209 0.79477 0.80632 0.79350 1.18974 1.18115 1.21067 1.20827 0.90382 0.93306 1.48002 0.94000 1.18587 0.92915 0.90954 0.86237 0.97816 1.20059 0.95322 0.94972 0.95211 1.20958 0.99497 0.93069 0.99023 1.21416 0.99436 1.00503 0.93001 1.21350 1.01082 0.94662 0.98356 1.21281 1.00193 0.94482 0.98021 1.21118 1.02348 0.99542 0.94078 1.62025 1.05423 1.55750 1.01796 1.22260 0.87823 0.98195 1.00152 1.21483 1.00858 1.00052 0.91452 1.22146 0.92508 1.02367 1.00382 1.21706 0.96389 0.96337 0.79951 0.88477 1.92745 1.92147 1.83575 1.52421 1.22338 1.01294 0.94495 0.90416 0.92305 0.87025 0.84216 0.83480 0.84182 0.87749 0.96666 0.90542 0.88464 0.90221 0.91747 0.88475 0.91266 0.96743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 2 C 0.03 1.68 5.46 84.65 0.46 2.14 16 3 Si 0.92 44.12 26.76 68.60 1.84 45.96 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.26 -11.81 5.75 99.48 0.57 -11.24 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.49 -26.89 7.07 25.60 0.18 -26.71 16 8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 9 C 0.22 10.05 1.62 43.43 0.07 10.12 16 10 H 0.00 0.20 4.59 -2.39 -0.01 0.19 16 11 C -0.05 -2.25 3.55 -19.86 -0.07 -2.32 16 12 C -0.11 -4.01 9.06 22.27 0.20 -3.81 16 13 C -0.13 -3.79 10.05 22.27 0.22 -3.56 16 14 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 15 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 16 C -0.15 -5.68 9.67 22.27 0.22 -5.47 16 17 N -0.53 -20.97 4.01 -879.94 -3.53 -24.50 16 18 C 0.04 1.40 5.28 86.33 0.46 1.86 16 19 C -0.10 -2.42 6.09 30.65 0.19 -2.24 16 20 C -0.14 -3.46 5.74 30.68 0.18 -3.29 16 21 C 0.09 3.05 4.04 30.65 0.12 3.18 16 22 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 23 F -0.23 -8.17 17.09 44.97 0.77 -7.40 16 24 C 0.04 1.80 4.71 86.32 0.41 2.20 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 26 H 0.11 4.37 7.92 -2.91 -0.02 4.35 16 27 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.10 3.87 7.99 -2.91 -0.02 3.85 16 31 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 2.43 6.87 -2.39 -0.02 2.42 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 3.38 6.64 -2.39 -0.02 3.36 16 38 H 0.01 0.63 7.12 -2.39 -0.02 0.61 16 Total: -1.00 -64.26 304.74 3.35 -60.91 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.90 Total: 16.60 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.08 Total: -34.83 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.23 Total: -81.25 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.77 Total: -7.40 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.84 Total: 45.96 kcal Total: -64.26 3.35 -60.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.352 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds