Wall clock time and date at job start Mon Mar 30 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47219 * 90.00203 * 3 2 1 5 5 H 1.48502 * 109.47438 * 330.00148 * 3 2 1 6 6 H 1.48505 * 109.47231 * 210.00005 * 3 2 1 7 7 C 1.37874 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.36775 * 7 2 1 9 9 C 1.50699 * 119.99725 * 0.36578 * 7 2 1 10 10 H 1.09006 * 109.47289 * 328.22676 * 9 7 2 11 11 C 1.50699 * 109.47215 * 88.23053 * 9 7 2 12 12 C 1.38234 * 119.99974 * 72.67610 * 11 9 7 13 13 C 1.38232 * 119.99751 * 179.77000 * 12 11 9 14 14 C 1.38235 * 120.00258 * 0.47757 * 13 12 11 15 15 C 1.38236 * 119.99804 * 359.79252 * 14 13 12 16 16 C 1.38228 * 119.99980 * 359.95814 * 15 14 13 17 17 N 1.46904 * 109.47128 * 208.23049 * 9 7 2 18 18 C 1.46843 * 110.99840 * 59.99924 * 17 9 7 19 19 C 1.53044 * 109.52156 * 185.83947 * 18 17 9 20 20 C 1.53117 * 109.27759 * 300.81918 * 19 18 17 21 21 C 1.53126 * 109.15909 * 57.65745 * 20 19 18 22 22 H 1.08999 * 109.50422 * 62.28394 * 21 20 19 23 23 F 1.39896 * 109.50054 * 182.40341 * 21 20 19 24 24 C 1.46847 * 111.00098 * 184.20768 * 17 9 7 25 25 H 0.96995 * 120.00017 * 175.09968 * 1 2 3 26 26 H 1.07999 * 120.00029 * 359.97438 * 12 11 9 27 27 H 1.08004 * 120.00236 * 180.25026 * 13 12 11 28 28 H 1.07997 * 120.00320 * 179.77003 * 14 13 12 29 29 H 1.07998 * 119.99899 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.00251 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46825 * 305.85406 * 18 17 9 32 32 H 1.09003 * 109.46353 * 65.82879 * 18 17 9 33 33 H 1.08996 * 109.50163 * 60.76311 * 19 18 17 34 34 H 1.09001 * 109.50028 * 180.83792 * 19 18 17 35 35 H 1.09002 * 109.52222 * 177.55948 * 20 19 18 36 36 H 1.08995 * 109.52605 * 297.68365 * 20 19 18 37 37 H 1.09001 * 109.46688 * 294.17792 * 24 17 9 38 38 H 1.09010 * 109.46061 * 54.14366 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 1.4466 2.6528 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0055 9 6 1.2511 -2.4991 -0.0094 10 1 0.3098 -2.3789 0.5269 11 6 0.9698 -2.9070 -1.4326 12 6 1.9957 -3.3718 -2.2341 13 6 1.7367 -3.7505 -3.5380 14 6 0.4537 -3.6551 -4.0437 15 6 -0.5712 -3.1850 -3.2440 16 6 -0.3132 -2.8112 -1.9384 17 7 2.0594 -3.5357 0.6464 18 6 2.3537 -3.1713 2.0382 19 6 3.3141 -4.1978 2.6434 20 6 2.6723 -5.5867 2.5845 21 6 2.3316 -5.9216 1.1297 22 1 3.2474 -5.9539 0.5396 23 9 1.6949 -7.1661 1.0738 24 6 1.3997 -4.8453 0.5685 25 1 -0.4850 -0.8369 -0.0718 26 1 2.9989 -3.4422 -1.8404 27 1 2.5375 -4.1174 -4.1630 28 1 0.2521 -3.9474 -5.0636 29 1 -1.5734 -3.1100 -3.6391 30 1 -1.1140 -2.4443 -1.3134 31 1 2.8135 -2.1835 2.0656 32 1 1.4279 -3.1570 2.6134 33 1 4.2454 -4.2029 2.0770 34 1 3.5206 -3.9353 3.6809 35 1 3.3703 -6.3274 2.9749 36 1 1.7618 -5.5930 3.1836 37 1 0.4783 -4.8231 1.1505 38 1 1.1665 -5.0731 -0.4717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689880313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:03 Heat of formation + Delta-G solvation = -34.824637 kcal Electronic energy + Delta-G solvation = -20507.477609 eV Core-core repulsion = 17456.259566 eV Total energy + Delta-G solvation = -3051.218043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.37755 -39.04750 -37.53757 -34.24572 -32.04622 -30.13155 -30.04478 -29.76114 -26.34372 -23.89545 -22.78102 -22.16484 -21.58771 -20.16553 -19.51040 -17.01884 -16.24923 -15.70332 -15.62084 -14.88742 -14.68385 -14.51400 -14.07413 -13.82480 -13.59115 -13.02801 -12.99022 -12.59546 -12.53490 -12.28015 -12.07886 -11.65606 -11.57020 -10.93038 -10.85165 -10.79238 -10.56797 -10.38111 -10.24483 -10.14355 -10.10233 -9.75602 -8.98903 -8.56007 -8.14506 -7.72333 -7.48499 -6.47748 -4.21753 2.17929 2.21617 3.36444 3.41249 3.56319 4.35797 4.46024 4.68521 4.83152 4.97622 5.08560 5.19765 5.25907 5.46139 5.58674 5.64747 5.75321 5.77912 5.85841 5.98946 6.05584 6.07579 6.09758 6.17902 6.32107 6.37892 6.41732 6.57133 6.67602 6.73056 6.87348 6.93245 7.21682 7.25636 7.53849 7.61606 7.83586 7.90528 8.17633 8.44268 8.71596 9.48719 10.87546 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.009240 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.128599 B = 3029.695947 C = 4464.498031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.232 3.768 10 H 0.015 0.985 11 C -0.033 4.033 12 C -0.098 4.098 13 C -0.133 4.133 14 C -0.150 4.150 15 C -0.125 4.125 16 C -0.126 4.126 17 N -0.523 5.523 18 C 0.064 3.936 19 C -0.114 4.114 20 C -0.143 4.143 21 C 0.094 3.906 22 H 0.088 0.912 23 F -0.221 7.221 24 C 0.029 3.971 25 H 0.271 0.729 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -8.215 0.529 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.182 4.182 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.613 4.613 8 H 0.081 0.919 9 C 0.126 3.874 10 H 0.032 0.968 11 C -0.034 4.034 12 C -0.117 4.117 13 C -0.151 4.151 14 C -0.168 4.168 15 C -0.143 4.143 16 C -0.145 4.145 17 N -0.247 5.247 18 C -0.064 4.064 19 C -0.152 4.152 20 C -0.181 4.181 21 C 0.057 3.943 22 H 0.106 0.894 23 F -0.202 7.202 24 C -0.100 4.100 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.979 -6.621 0.355 7.733 hybrid contribution -0.754 -1.609 0.187 1.787 sum 3.225 -8.230 0.542 8.855 Atomic orbital electron populations 1.70776 1.06925 1.31065 1.45053 1.25861 0.96438 1.02679 0.93251 0.83509 0.74823 0.74962 0.76834 1.21355 1.21025 1.21216 1.21772 0.94719 0.89570 1.55243 0.91926 1.18496 0.92613 0.89684 0.86618 0.96758 1.20507 0.91835 0.92277 0.98760 1.20910 0.99404 0.98497 0.92841 1.21038 0.96284 1.01787 0.95989 1.20843 0.93579 1.03344 0.99024 1.20938 0.98382 1.00547 0.94463 1.21025 0.96900 1.00901 0.95689 1.61905 1.46599 1.00796 1.15435 1.21950 0.97163 0.99501 0.87790 1.21572 0.99577 0.93399 1.00620 1.22157 1.01616 0.98651 0.95656 1.21594 0.96043 0.78842 0.97831 0.89416 1.92762 1.84711 1.45003 1.97698 1.22568 0.94884 0.91074 1.01510 0.91740 0.86163 0.87378 0.87525 0.87388 0.87114 0.88665 0.96103 0.91067 0.91468 0.91437 0.91504 0.95139 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.60 55.43 0.75 -24.87 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.07 24.14 29.90 -169.99 -5.08 19.06 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.57 -14.78 6.91 -34.44 -0.24 -15.02 16 8 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.23 5.41 1.43 -70.02 -0.10 5.31 16 10 H 0.01 0.38 6.46 -51.93 -0.34 0.05 16 11 C -0.03 -0.72 3.43 -104.62 -0.36 -1.08 16 12 C -0.10 -2.01 8.52 -39.59 -0.34 -2.35 16 13 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 14 C -0.15 -2.63 10.05 -39.58 -0.40 -3.02 16 15 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 16 C -0.13 -2.71 9.27 -39.58 -0.37 -3.08 16 17 N -0.52 -10.46 4.08 -229.47 -0.94 -11.39 16 18 C 0.06 1.18 5.27 -3.83 -0.02 1.16 16 19 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 20 C -0.14 -1.99 5.74 -26.61 -0.15 -2.14 16 21 C 0.09 1.47 4.04 -26.65 -0.11 1.36 16 22 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 23 F -0.22 -3.66 17.09 2.25 0.04 -3.62 16 24 C 0.03 0.53 4.88 -3.84 -0.02 0.51 16 25 H 0.27 7.60 5.36 -40.82 -0.22 7.38 16 26 H 0.12 2.46 7.94 -52.49 -0.42 2.04 16 27 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.11 2.42 7.13 -52.48 -0.37 2.05 16 31 H 0.10 1.93 6.87 -51.93 -0.36 1.57 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.56 6.27 -51.92 -0.33 1.24 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -27.69 306.15 -9.23 -36.92 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.46 Total: 4.46 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.15 Total: -25.16 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.18 Total: -36.26 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.69 -9.23 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.091 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds