Wall clock time and date at job start Mon Mar 30 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47219 * 90.00203 * 3 2 1 5 5 H 1.48502 * 109.47438 * 330.00148 * 3 2 1 6 6 H 1.48505 * 109.47231 * 210.00005 * 3 2 1 7 7 C 1.37874 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.36775 * 7 2 1 9 9 C 1.50699 * 119.99725 * 0.36578 * 7 2 1 10 10 H 1.09006 * 109.47289 * 328.22676 * 9 7 2 11 11 C 1.50699 * 109.47215 * 88.23053 * 9 7 2 12 12 C 1.38234 * 119.99974 * 72.67610 * 11 9 7 13 13 C 1.38232 * 119.99751 * 179.77000 * 12 11 9 14 14 C 1.38235 * 120.00258 * 0.47757 * 13 12 11 15 15 C 1.38236 * 119.99804 * 359.79252 * 14 13 12 16 16 C 1.38228 * 119.99980 * 359.95814 * 15 14 13 17 17 N 1.46904 * 109.47128 * 208.23049 * 9 7 2 18 18 C 1.46843 * 110.99840 * 59.99924 * 17 9 7 19 19 C 1.53044 * 109.52156 * 185.83947 * 18 17 9 20 20 C 1.53117 * 109.27759 * 300.81918 * 19 18 17 21 21 C 1.53126 * 109.15909 * 57.65745 * 20 19 18 22 22 H 1.08999 * 109.50422 * 62.28394 * 21 20 19 23 23 F 1.39896 * 109.50054 * 182.40341 * 21 20 19 24 24 C 1.46847 * 111.00098 * 184.20768 * 17 9 7 25 25 H 0.96995 * 120.00017 * 175.09968 * 1 2 3 26 26 H 1.07999 * 120.00029 * 359.97438 * 12 11 9 27 27 H 1.08004 * 120.00236 * 180.25026 * 13 12 11 28 28 H 1.07997 * 120.00320 * 179.77003 * 14 13 12 29 29 H 1.07998 * 119.99899 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.00251 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46825 * 305.85406 * 18 17 9 32 32 H 1.09003 * 109.46353 * 65.82879 * 18 17 9 33 33 H 1.08996 * 109.50163 * 60.76311 * 19 18 17 34 34 H 1.09001 * 109.50028 * 180.83792 * 19 18 17 35 35 H 1.09002 * 109.52222 * 177.55948 * 20 19 18 36 36 H 1.08995 * 109.52605 * 297.68365 * 20 19 18 37 37 H 1.09001 * 109.46688 * 294.17792 * 24 17 9 38 38 H 1.09010 * 109.46061 * 54.14366 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 1.4466 2.6528 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0055 9 6 1.2511 -2.4991 -0.0094 10 1 0.3098 -2.3789 0.5269 11 6 0.9698 -2.9070 -1.4326 12 6 1.9957 -3.3718 -2.2341 13 6 1.7367 -3.7505 -3.5380 14 6 0.4537 -3.6551 -4.0437 15 6 -0.5712 -3.1850 -3.2440 16 6 -0.3132 -2.8112 -1.9384 17 7 2.0594 -3.5357 0.6464 18 6 2.3537 -3.1713 2.0382 19 6 3.3141 -4.1978 2.6434 20 6 2.6723 -5.5867 2.5845 21 6 2.3316 -5.9216 1.1297 22 1 3.2474 -5.9539 0.5396 23 9 1.6949 -7.1661 1.0738 24 6 1.3997 -4.8453 0.5685 25 1 -0.4850 -0.8369 -0.0718 26 1 2.9989 -3.4422 -1.8404 27 1 2.5375 -4.1174 -4.1630 28 1 0.2521 -3.9474 -5.0636 29 1 -1.5734 -3.1100 -3.6391 30 1 -1.1140 -2.4443 -1.3134 31 1 2.8135 -2.1835 2.0656 32 1 1.4279 -3.1570 2.6134 33 1 4.2454 -4.2029 2.0770 34 1 3.5206 -3.9353 3.6809 35 1 3.3703 -6.3274 2.9749 36 1 1.7618 -5.5930 3.1836 37 1 0.4783 -4.8231 1.1505 38 1 1.1665 -5.0731 -0.4717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689880313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:03 Heat of formation + Delta-G solvation = -49.092966 kcal Electronic energy + Delta-G solvation = -20508.096330 eV Core-core repulsion = 17456.259566 eV Total energy + Delta-G solvation = -3051.836764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.69114 -40.63933 -39.01133 -35.93870 -33.77026 -31.67127 -31.53782 -31.23476 -28.10373 -25.65960 -24.20770 -23.68615 -23.12943 -21.76400 -20.92776 -18.90468 -17.72055 -17.23676 -16.98101 -16.45855 -16.13355 -15.93418 -15.64949 -15.52215 -15.10570 -14.63565 -14.55854 -14.08991 -13.97692 -13.83982 -13.53566 -13.16875 -13.07512 -12.75174 -12.62528 -12.16185 -12.00078 -11.92102 -11.87106 -11.73380 -11.49149 -11.15072 -10.84091 -10.57453 -9.69264 -9.35294 -9.20827 -8.57562 -6.32238 0.62167 0.67375 1.52637 1.60857 1.77549 2.53596 2.87642 3.14566 3.23062 3.54393 3.68703 3.73060 3.94158 4.11903 4.14153 4.22216 4.29622 4.37330 4.42464 4.50827 4.58348 4.74817 4.76401 4.77987 4.90592 4.94407 4.96803 5.05669 5.19770 5.25966 5.32772 5.35917 5.68337 5.70712 5.84602 5.90479 6.03990 6.28281 6.39946 6.46572 6.66112 7.46217 8.77017 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.009240 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.128599 B = 3029.695947 C = 4464.498031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.026 4.026 3 Si 1.112 2.888 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.572 4.572 8 H 0.056 0.944 9 C 0.237 3.763 10 H -0.028 1.028 11 C -0.055 4.055 12 C -0.111 4.111 13 C -0.126 4.126 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.152 4.152 17 N -0.518 5.518 18 C 0.060 3.940 19 C -0.101 4.101 20 C -0.137 4.137 21 C 0.099 3.901 22 H 0.103 0.897 23 F -0.224 7.224 24 C 0.033 3.967 25 H 0.260 0.740 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -9.573 -0.567 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.225 4.225 3 Si 0.935 3.065 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.610 4.610 8 H 0.074 0.926 9 C 0.130 3.870 10 H -0.010 1.010 11 C -0.056 4.056 12 C -0.129 4.129 13 C -0.144 4.144 14 C -0.158 4.158 15 C -0.145 4.145 16 C -0.171 4.171 17 N -0.242 5.242 18 C -0.067 4.067 19 C -0.139 4.139 20 C -0.175 4.175 21 C 0.063 3.937 22 H 0.121 0.879 23 F -0.205 7.205 24 C -0.096 4.096 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.021 0.979 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.908 -8.010 -0.729 9.979 hybrid contribution -1.392 -1.279 0.476 1.950 sum 4.515 -9.288 -0.253 10.331 Atomic orbital electron populations 1.70864 1.07916 1.30484 1.47938 1.27108 0.96494 1.06024 0.92870 0.82983 0.74271 0.71596 0.77663 1.19828 1.21606 1.19517 1.21937 0.94342 0.90751 1.54005 0.92583 1.18278 0.90737 0.90196 0.87743 1.01031 1.20387 0.92897 0.94267 0.98030 1.20958 0.98618 0.99285 0.94077 1.21444 0.97747 1.00130 0.95059 1.21318 0.92677 1.01271 1.00533 1.21264 1.00338 0.99615 0.93270 1.21047 0.96335 1.02576 0.97175 1.61897 1.45546 1.00704 1.16094 1.22024 0.97364 1.00219 0.87142 1.21507 0.98385 0.92213 1.01810 1.22144 1.02236 0.98928 0.94189 1.21591 0.95331 0.77514 0.99300 0.87943 1.92759 1.84899 1.45009 1.97794 1.22543 0.95041 0.91207 1.00846 0.92959 0.86529 0.83718 0.83351 0.84878 0.89388 0.90860 0.97864 0.90142 0.88878 0.88190 0.91896 0.96912 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.60 21.45 0.29 -55.49 16 2 C -0.03 -1.41 5.46 84.65 0.46 -0.95 16 3 Si 1.11 49.40 29.90 68.60 2.05 51.45 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.57 -30.54 6.91 25.60 0.18 -30.37 16 8 H 0.06 3.00 7.79 -2.91 -0.02 2.98 16 9 C 0.24 11.71 1.43 43.42 0.06 11.77 16 10 H -0.03 -1.58 6.46 -2.38 -0.02 -1.60 16 11 C -0.05 -2.51 3.43 -19.87 -0.07 -2.58 16 12 C -0.11 -4.49 8.52 22.27 0.19 -4.30 16 13 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 14 C -0.14 -4.46 10.05 22.27 0.22 -4.23 16 15 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 16 C -0.15 -6.80 9.27 22.27 0.21 -6.59 16 17 N -0.52 -21.38 4.08 -879.91 -3.59 -24.97 16 18 C 0.06 2.30 5.27 86.33 0.45 2.75 16 19 C -0.10 -2.73 6.09 30.65 0.19 -2.55 16 20 C -0.14 -3.49 5.74 30.68 0.18 -3.31 16 21 C 0.10 2.96 4.04 30.65 0.12 3.08 16 22 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 23 F -0.22 -7.05 17.09 44.97 0.77 -6.28 16 24 C 0.03 1.23 4.88 86.32 0.42 1.65 16 25 H 0.26 15.68 5.36 -92.71 -0.50 15.18 16 26 H 0.12 4.71 7.94 -2.91 -0.02 4.69 16 27 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 30 H 0.09 4.21 7.13 -2.91 -0.02 4.18 16 31 H 0.07 3.07 6.87 -2.39 -0.02 3.06 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 2.77 6.27 -2.38 -0.01 2.75 16 Total: -1.00 -63.02 306.15 3.89 -59.13 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.30 Total: 20.17 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 3.06 Total: -44.00 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.30 Total: -80.46 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.77 Total: -6.28 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -63.02 3.89 -59.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds