Wall clock time and date at job start Mon Mar 30 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48496 * 109.47096 * 264.73893 * 3 2 1 5 5 H 1.48508 * 109.47131 * 24.73584 * 3 2 1 6 6 H 1.48495 * 109.47529 * 144.73407 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 354.16168 * 7 2 1 9 9 C 1.50700 * 120.00017 * 174.16416 * 7 2 1 10 10 H 1.08992 * 109.47432 * 3.40729 * 9 7 2 11 11 C 1.50701 * 109.47070 * 243.40433 * 9 7 2 12 12 C 1.38234 * 119.99766 * 286.03578 * 11 9 7 13 13 C 1.38240 * 119.99850 * 179.76729 * 12 11 9 14 14 C 1.38235 * 119.99762 * 0.48582 * 13 12 11 15 15 C 1.38240 * 119.99882 * 359.78889 * 14 13 12 16 16 C 1.38231 * 119.99863 * 106.31323 * 11 9 7 17 17 N 1.46905 * 109.46995 * 123.40609 * 9 7 2 18 18 C 1.46845 * 110.99841 * 182.28401 * 17 9 7 19 19 C 1.53036 * 109.52207 * 185.83828 * 18 17 9 20 20 C 1.53119 * 109.27745 * 300.82002 * 19 18 17 21 21 C 1.53119 * 109.16445 * 57.65583 * 20 19 18 22 22 H 1.09004 * 109.50425 * 62.27952 * 21 20 19 23 23 F 1.39898 * 109.50648 * 182.40360 * 21 20 19 24 24 C 1.46848 * 110.99919 * 306.49189 * 17 9 7 25 25 H 0.97001 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00468 * 0.02562 * 12 11 9 27 27 H 1.07996 * 120.00276 * 180.25465 * 13 12 11 28 28 H 1.08000 * 120.00216 * 179.76859 * 14 13 12 29 29 H 1.08000 * 119.99277 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.00451 * 359.97438 * 16 11 9 31 31 H 1.08998 * 109.46147 * 65.82540 * 18 17 9 32 32 H 1.09003 * 109.46308 * 305.85161 * 18 17 9 33 33 H 1.09001 * 109.50453 * 180.87855 * 19 18 17 34 34 H 1.09003 * 109.50320 * 60.76052 * 19 18 17 35 35 H 1.09002 * 109.52182 * 177.55915 * 20 19 18 36 36 H 1.09000 * 109.52731 * 297.74680 * 20 19 18 37 37 H 1.08997 * 109.46173 * 294.18113 * 24 17 9 38 38 H 1.09009 * 109.46255 * 54.15683 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6077 1.9823 -1.3941 5 1 1.3952 2.6823 0.5859 6 1 3.4865 1.4751 0.8083 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0961 9 6 3.5057 -1.1973 -0.1322 10 1 3.8706 -0.1705 -0.1560 11 6 3.8957 -1.8988 -1.4077 12 6 3.8031 -3.2752 -1.4955 13 6 4.1563 -3.9184 -2.6671 14 6 4.6115 -3.1859 -3.7474 15 6 4.7094 -1.8099 -3.6576 16 6 4.3514 -1.1663 -2.4878 17 7 4.0970 -1.9006 1.0140 18 6 5.5637 -1.8768 0.9464 19 6 6.1416 -2.7387 2.0712 20 6 5.6654 -2.1943 3.4208 21 6 4.1344 -2.1844 3.4469 22 1 3.7622 -3.2044 3.3503 23 9 3.6913 -1.6372 4.6557 24 6 3.6148 -1.3387 2.2821 25 1 -0.4851 0.8400 -0.0004 26 1 3.4510 -3.8479 -0.6502 27 1 4.0801 -4.9933 -2.7371 28 1 4.8910 -3.6886 -4.6615 29 1 5.0655 -1.2377 -4.5015 30 1 4.4275 -0.0913 -2.4178 31 1 5.9158 -0.8512 1.0573 32 1 5.8893 -2.2704 -0.0165 33 1 7.2304 -2.7083 2.0303 34 1 5.8010 -3.7674 1.9531 35 1 6.0392 -2.8308 4.2228 36 1 6.0385 -1.1791 3.5563 37 1 3.9759 -0.3156 2.3867 38 1 2.5247 -1.3415 2.2894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689880317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:08 Heat of formation + Delta-G solvation = -29.633204 kcal Electronic energy + Delta-G solvation = -20492.528009 eV Core-core repulsion = 17441.535084 eV Total energy + Delta-G solvation = -3050.992925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.20042 -39.07121 -37.58411 -34.07525 -32.09212 -30.49887 -30.20554 -29.55286 -27.11464 -24.02869 -22.54351 -22.05570 -21.80575 -19.96935 -19.34577 -17.06105 -16.31689 -15.87385 -15.49531 -14.99175 -14.55679 -14.41653 -14.23906 -14.04383 -13.63085 -12.97497 -12.92110 -12.73202 -12.49998 -12.29118 -12.12607 -11.93860 -11.69152 -11.12365 -11.04144 -10.82405 -10.63988 -10.43626 -10.15917 -10.07772 -9.90673 -9.70213 -9.53978 -8.76053 -8.25239 -7.88827 -7.45355 -6.26852 -4.25951 2.06310 2.11601 3.14525 3.21431 3.24490 4.22912 4.36879 4.62787 4.88417 5.05801 5.06611 5.15941 5.37165 5.49172 5.50089 5.54464 5.67229 5.78264 5.86061 5.91258 6.01135 6.04781 6.14501 6.23183 6.25571 6.30730 6.36609 6.47075 6.60375 6.68295 6.76376 6.88462 7.11086 7.17597 7.31378 7.44986 7.72373 7.89876 7.97521 8.44571 8.84289 9.34253 10.84944 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.009952 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.339543 B = 2812.908434 C = 4134.499381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.212 3.788 10 H 0.018 0.982 11 C -0.028 4.028 12 C -0.093 4.093 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.124 4.124 16 C -0.134 4.134 17 N -0.525 5.525 18 C 0.044 3.956 19 C -0.110 4.110 20 C -0.144 4.144 21 C 0.091 3.909 22 H 0.089 0.911 23 F -0.220 7.220 24 C 0.043 3.957 25 H 0.268 0.732 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.354 -4.381 0.245 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.534 4.534 8 H 0.103 0.897 9 C 0.107 3.893 10 H 0.035 0.965 11 C -0.029 4.029 12 C -0.111 4.111 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.142 4.142 16 C -0.153 4.153 17 N -0.250 5.250 18 C -0.084 4.084 19 C -0.148 4.148 20 C -0.182 4.182 21 C 0.054 3.946 22 H 0.107 0.893 23 F -0.201 7.201 24 C -0.086 4.086 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.001 -4.720 0.259 11.974 hybrid contribution 0.561 1.938 -0.031 2.018 sum 11.562 -2.782 0.228 11.895 Atomic orbital electron populations 1.69865 1.06123 1.27330 1.48503 1.25055 0.94747 0.98642 0.94078 0.87028 0.80198 0.84338 0.79047 1.19801 1.21058 1.19301 1.20758 0.87575 0.95102 1.49975 0.89673 1.18795 0.95836 0.90443 0.84216 0.96486 1.20226 0.92476 0.93859 0.96326 1.20963 0.98559 0.94378 0.97209 1.21081 1.00604 0.99100 0.93881 1.20874 1.03118 0.94153 0.98399 1.20913 1.01416 0.94597 0.97319 1.20971 1.01193 0.99274 0.93866 1.62095 1.04025 1.56647 1.02232 1.22153 0.90142 0.97431 0.98685 1.21490 0.99374 1.00449 0.93449 1.22166 0.95306 1.02077 0.98625 1.21645 0.93976 0.98557 0.80376 0.89350 1.92761 1.91104 1.88332 1.47871 1.22397 1.03605 0.94581 0.87988 0.92202 0.85712 0.87170 0.87395 0.87286 0.87427 0.96030 0.90748 0.91742 0.90926 0.91459 0.91607 0.95381 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.43 0.77 -24.83 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 20.70 27.04 -169.99 -4.60 16.11 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.22 6.67 56.52 0.38 -5.84 16 7 C -0.50 -12.96 7.13 -34.44 -0.25 -13.21 16 8 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.21 4.74 1.65 -70.01 -0.12 4.62 16 10 H 0.02 0.41 4.47 -51.93 -0.23 0.18 16 11 C -0.03 -0.57 3.54 -104.62 -0.37 -0.94 16 12 C -0.09 -1.76 8.96 -39.58 -0.35 -2.12 16 13 C -0.13 -2.13 10.05 -39.58 -0.40 -2.52 16 14 C -0.15 -2.33 10.05 -39.58 -0.40 -2.72 16 15 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 16 C -0.13 -2.59 9.67 -39.59 -0.38 -2.98 16 17 N -0.52 -10.30 4.01 -229.48 -0.92 -11.22 16 18 C 0.04 0.74 5.25 -3.84 -0.02 0.72 16 19 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 20 C -0.14 -2.01 5.74 -26.61 -0.15 -2.16 16 21 C 0.09 1.52 4.04 -26.65 -0.11 1.41 16 22 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 23 F -0.22 -3.95 17.09 2.25 0.04 -3.91 16 24 C 0.04 0.85 4.93 -3.83 -0.02 0.83 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.12 2.39 7.91 -52.49 -0.41 1.98 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 2.04 7.99 -52.49 -0.42 1.62 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.11 2.47 6.68 -51.92 -0.35 2.12 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -27.84 306.93 -8.87 -36.71 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.58 Total: 3.64 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.22 Total: -21.13 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.15 Total: -36.05 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.60 Total: 16.11 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.84 -8.87 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.082 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds