Wall clock time and date at job start Mon Mar 30 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48496 * 109.47096 * 264.73893 * 3 2 1 5 5 H 1.48508 * 109.47131 * 24.73584 * 3 2 1 6 6 H 1.48495 * 109.47529 * 144.73407 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 354.16168 * 7 2 1 9 9 C 1.50700 * 120.00017 * 174.16416 * 7 2 1 10 10 H 1.08992 * 109.47432 * 3.40729 * 9 7 2 11 11 C 1.50701 * 109.47070 * 243.40433 * 9 7 2 12 12 C 1.38234 * 119.99766 * 286.03578 * 11 9 7 13 13 C 1.38240 * 119.99850 * 179.76729 * 12 11 9 14 14 C 1.38235 * 119.99762 * 0.48582 * 13 12 11 15 15 C 1.38240 * 119.99882 * 359.78889 * 14 13 12 16 16 C 1.38231 * 119.99863 * 106.31323 * 11 9 7 17 17 N 1.46905 * 109.46995 * 123.40609 * 9 7 2 18 18 C 1.46845 * 110.99841 * 182.28401 * 17 9 7 19 19 C 1.53036 * 109.52207 * 185.83828 * 18 17 9 20 20 C 1.53119 * 109.27745 * 300.82002 * 19 18 17 21 21 C 1.53119 * 109.16445 * 57.65583 * 20 19 18 22 22 H 1.09004 * 109.50425 * 62.27952 * 21 20 19 23 23 F 1.39898 * 109.50648 * 182.40360 * 21 20 19 24 24 C 1.46848 * 110.99919 * 306.49189 * 17 9 7 25 25 H 0.97001 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00468 * 0.02562 * 12 11 9 27 27 H 1.07996 * 120.00276 * 180.25465 * 13 12 11 28 28 H 1.08000 * 120.00216 * 179.76859 * 14 13 12 29 29 H 1.08000 * 119.99277 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.00451 * 359.97438 * 16 11 9 31 31 H 1.08998 * 109.46147 * 65.82540 * 18 17 9 32 32 H 1.09003 * 109.46308 * 305.85161 * 18 17 9 33 33 H 1.09001 * 109.50453 * 180.87855 * 19 18 17 34 34 H 1.09003 * 109.50320 * 60.76052 * 19 18 17 35 35 H 1.09002 * 109.52182 * 177.55915 * 20 19 18 36 36 H 1.09000 * 109.52731 * 297.74680 * 20 19 18 37 37 H 1.08997 * 109.46173 * 294.18113 * 24 17 9 38 38 H 1.09009 * 109.46255 * 54.15683 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6077 1.9823 -1.3941 5 1 1.3952 2.6823 0.5859 6 1 3.4865 1.4751 0.8083 7 6 2.0046 -1.1940 0.0005 8 1 1.4688 -2.1269 0.0961 9 6 3.5057 -1.1973 -0.1322 10 1 3.8706 -0.1705 -0.1560 11 6 3.8957 -1.8988 -1.4077 12 6 3.8031 -3.2752 -1.4955 13 6 4.1563 -3.9184 -2.6671 14 6 4.6115 -3.1859 -3.7474 15 6 4.7094 -1.8099 -3.6576 16 6 4.3514 -1.1663 -2.4878 17 7 4.0970 -1.9006 1.0140 18 6 5.5637 -1.8768 0.9464 19 6 6.1416 -2.7387 2.0712 20 6 5.6654 -2.1943 3.4208 21 6 4.1344 -2.1844 3.4469 22 1 3.7622 -3.2044 3.3503 23 9 3.6913 -1.6372 4.6557 24 6 3.6148 -1.3387 2.2821 25 1 -0.4851 0.8400 -0.0004 26 1 3.4510 -3.8479 -0.6502 27 1 4.0801 -4.9933 -2.7371 28 1 4.8910 -3.6886 -4.6615 29 1 5.0655 -1.2377 -4.5015 30 1 4.4275 -0.0913 -2.4178 31 1 5.9158 -0.8512 1.0573 32 1 5.8893 -2.2704 -0.0165 33 1 7.2304 -2.7083 2.0303 34 1 5.8010 -3.7674 1.9531 35 1 6.0392 -2.8308 4.2228 36 1 6.0385 -1.1791 3.5563 37 1 3.9759 -0.3156 2.3867 38 1 2.5247 -1.3415 2.2894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689880317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:08 Heat of formation + Delta-G solvation = -45.056324 kcal Electronic energy + Delta-G solvation = -20493.196806 eV Core-core repulsion = 17441.535084 eV Total energy + Delta-G solvation = -3051.661722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.62281 -40.55808 -38.97572 -35.68960 -33.96721 -31.90323 -31.58593 -30.96168 -28.87416 -25.65055 -23.93091 -23.53278 -23.20781 -21.43165 -20.80621 -19.08477 -17.70250 -17.40253 -16.88833 -16.52197 -16.14172 -15.90818 -15.63537 -15.50825 -15.10016 -14.84919 -14.40011 -14.12317 -13.89658 -13.79538 -13.61569 -13.33129 -13.21225 -12.92696 -12.63460 -12.16470 -12.04138 -11.94184 -11.79941 -11.61603 -11.48089 -11.34043 -11.07943 -10.83350 -9.63368 -9.34729 -9.08214 -8.38388 -6.39249 0.66531 0.72459 1.20860 1.22993 1.29812 2.20829 2.79132 3.14607 3.18768 3.61946 3.77344 3.85251 3.99342 4.16559 4.18557 4.27540 4.35122 4.42602 4.45199 4.55968 4.63639 4.78022 4.81550 4.86527 4.91426 4.96128 5.04009 5.08336 5.21494 5.27762 5.35978 5.39333 5.45098 5.74647 5.79051 5.97195 6.06631 6.26121 6.36959 6.59173 6.69932 7.24039 8.77871 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.009952 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.339543 B = 2812.908434 C = 4134.499381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.028 3.972 3 Si 0.921 3.079 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.486 4.486 8 H 0.042 0.958 9 C 0.218 3.782 10 H 0.005 0.995 11 C -0.055 4.055 12 C -0.107 4.107 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.154 4.154 17 N -0.525 5.525 18 C 0.044 3.956 19 C -0.101 4.101 20 C -0.136 4.136 21 C 0.093 3.907 22 H 0.097 0.903 23 F -0.228 7.228 24 C 0.045 3.955 25 H 0.268 0.732 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.013 0.987 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.545 -5.459 -0.851 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.172 4.172 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.112 3.888 10 H 0.022 0.978 11 C -0.056 4.056 12 C -0.126 4.126 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.140 4.140 16 C -0.173 4.173 17 N -0.249 5.249 18 C -0.084 4.084 19 C -0.138 4.138 20 C -0.174 4.174 21 C 0.057 3.943 22 H 0.115 0.885 23 F -0.209 7.209 24 C -0.084 4.084 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.222 -5.810 -0.835 15.386 hybrid contribution -0.401 2.138 0.247 2.189 sum 13.822 -3.672 -0.588 14.313 Atomic orbital electron populations 1.69997 1.07740 1.28010 1.51521 1.25720 0.95306 1.01855 0.94305 0.86143 0.79121 0.80514 0.79605 1.18605 1.21031 1.18595 1.20831 0.89904 0.93192 1.48506 0.93945 1.18605 0.93249 0.90586 0.86393 0.97772 1.20095 0.95006 0.94733 0.95750 1.20954 0.99534 0.93792 0.98275 1.21420 0.99205 1.00757 0.92908 1.21346 1.00963 0.93826 0.99336 1.21278 1.00169 0.95470 0.97035 1.21110 1.02194 0.99263 0.94701 1.61974 1.06274 1.55627 1.01072 1.22264 0.87688 0.97990 1.00478 1.21486 1.01102 0.99784 0.91478 1.22145 0.92392 1.02885 0.99968 1.21694 0.96313 0.97802 0.78495 0.88503 1.92747 1.91468 1.88499 1.48144 1.22305 1.01293 0.94857 0.89915 0.92309 0.86992 0.84183 0.83463 0.84208 0.87908 0.96611 0.90525 0.88434 0.90238 0.88475 0.91679 0.96837 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.96 21.44 0.30 -56.91 16 2 C 0.03 1.58 5.47 84.65 0.46 2.04 16 3 Si 0.92 44.23 27.04 68.60 1.85 46.09 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.26 -12.08 6.67 99.48 0.66 -11.42 16 7 C -0.49 -26.89 7.13 25.60 0.18 -26.70 16 8 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 9 C 0.22 10.02 1.65 43.42 0.07 10.09 16 10 H 0.00 0.22 4.47 -2.39 -0.01 0.21 16 11 C -0.05 -2.26 3.54 -19.87 -0.07 -2.33 16 12 C -0.11 -4.01 8.96 22.27 0.20 -3.81 16 13 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 14 C -0.14 -3.75 10.05 22.27 0.22 -3.52 16 15 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 16 C -0.15 -5.78 9.67 22.27 0.22 -5.57 16 17 N -0.52 -20.94 4.01 -879.92 -3.52 -24.47 16 18 C 0.04 1.40 5.25 86.33 0.45 1.85 16 19 C -0.10 -2.41 6.09 30.65 0.19 -2.23 16 20 C -0.14 -3.43 5.74 30.67 0.18 -3.25 16 21 C 0.09 3.06 4.04 30.65 0.12 3.18 16 22 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 23 F -0.23 -8.11 17.09 44.97 0.77 -7.34 16 24 C 0.05 1.86 4.93 86.33 0.43 2.29 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.11 4.38 7.91 -2.91 -0.02 4.35 16 27 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 28 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.10 3.85 7.99 -2.91 -0.02 3.83 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 2.44 6.77 -2.39 -0.02 2.42 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 3.34 6.68 -2.38 -0.02 3.32 16 Total: -1.00 -64.35 306.93 3.48 -60.86 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.99 Total: 16.72 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.10 Total: -34.96 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -3.23 Total: -81.37 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.77 Total: -7.34 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.85 Total: 46.09 kcal Total: -64.35 3.48 -60.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689880317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.805 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds