Wall clock time and date at job start Mon Mar 30 2020 07:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99722 * 2 1 4 4 H 1.48504 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47713 * 300.00295 * 3 2 1 6 6 H 1.48498 * 109.47332 * 60.00448 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 186.54873 * 7 2 1 9 9 C 1.50695 * 120.00164 * 6.53976 * 7 2 1 10 10 H 1.09000 * 109.47543 * 335.14411 * 9 7 2 11 11 C 1.50703 * 109.46813 * 95.14139 * 9 7 2 12 12 C 1.38232 * 119.99902 * 73.80983 * 11 9 7 13 13 C 1.38241 * 120.00026 * 179.76690 * 12 11 9 14 14 C 1.38231 * 119.99551 * 0.49900 * 13 12 11 15 15 C 1.38229 * 120.00400 * 359.75184 * 14 13 12 16 16 C 1.38234 * 120.00133 * 359.97438 * 15 14 13 17 17 N 1.46901 * 109.47507 * 215.13978 * 9 7 2 18 18 C 1.46843 * 111.00073 * 184.21014 * 17 9 7 19 19 C 1.53041 * 109.52175 * 174.16106 * 18 17 9 20 20 C 1.53122 * 109.27557 * 59.18276 * 19 18 17 21 21 F 1.39904 * 109.52012 * 182.43998 * 20 19 18 22 22 C 1.53120 * 109.15887 * 302.34326 * 20 19 18 23 23 C 1.46848 * 110.99410 * 60.00273 * 17 9 7 24 24 H 0.97000 * 119.99932 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00241 * 359.97438 * 12 11 9 26 26 H 1.08001 * 119.99686 * 180.23360 * 13 12 11 27 27 H 1.08006 * 119.99641 * 179.72800 * 14 13 12 28 28 H 1.08004 * 120.00245 * 179.97438 * 15 14 13 29 29 H 1.07996 * 120.00615 * 179.97438 * 16 15 14 30 30 H 1.09002 * 109.46164 * 54.15045 * 18 17 9 31 31 H 1.08999 * 109.46341 * 294.17867 * 18 17 9 32 32 H 1.08999 * 109.50592 * 299.24082 * 19 18 17 33 33 H 1.09000 * 109.50265 * 179.11940 * 19 18 17 34 34 H 1.09003 * 109.52779 * 62.25072 * 20 19 18 35 35 H 1.09003 * 109.50094 * 177.59819 * 22 20 19 36 36 H 1.09000 * 109.50811 * 297.71350 * 22 20 19 37 37 H 1.08997 * 109.46542 * 65.82727 * 23 17 9 38 38 H 1.09002 * 109.46542 * 305.85405 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0793 -1.1972 0.1061 9 6 1.2585 -2.4948 -0.1497 10 1 0.2310 -2.3655 0.1905 11 6 1.2593 -2.9110 -1.5982 12 6 2.4133 -3.4092 -2.1735 13 6 2.4127 -3.7955 -3.5008 14 6 1.2610 -3.6739 -4.2555 15 6 0.1085 -3.1709 -3.6816 16 6 0.1074 -2.7899 -2.3528 17 7 1.9150 -3.5314 0.6579 18 6 1.2742 -4.8377 0.4594 19 6 2.0703 -5.9155 1.1989 20 6 2.1210 -5.5724 2.6904 21 9 2.8944 -6.5246 3.3630 22 6 2.7484 -4.1867 2.8662 23 6 1.9327 -3.1591 2.0783 24 1 -0.4850 0.8401 0.0004 25 1 3.3144 -3.4998 -1.5851 26 1 3.3134 -4.1882 -3.9492 27 1 1.2618 -3.9716 -5.2937 28 1 -0.7913 -3.0755 -4.2714 29 1 -0.7929 -2.3965 -1.9045 30 1 1.2484 -5.0715 -0.6049 31 1 0.2568 -4.8061 0.8490 32 1 3.0839 -5.9571 0.8004 33 1 1.5857 -6.8825 1.0643 34 1 1.1101 -5.5689 3.0980 35 1 2.7483 -3.9187 3.9227 36 1 3.7727 -4.2011 2.4939 37 1 0.9122 -3.1354 2.4604 38 1 2.3851 -2.1737 2.1899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689902903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:55 Heat of formation + Delta-G solvation = -32.888694 kcal Electronic energy + Delta-G solvation = -20326.677015 eV Core-core repulsion = 17275.542921 eV Total energy + Delta-G solvation = -3051.134094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.34925 -38.90180 -37.41802 -33.83825 -31.83092 -30.52046 -30.03176 -29.65176 -26.53672 -23.79018 -22.69854 -22.05689 -21.56998 -19.98654 -19.32149 -16.54697 -16.04491 -15.87079 -15.62010 -14.76842 -14.62811 -14.45683 -14.12706 -13.97636 -13.52693 -13.15152 -12.58662 -12.42746 -12.38920 -11.95267 -11.81441 -11.59630 -11.44426 -11.17537 -11.03871 -10.78929 -10.68743 -10.29720 -10.23039 -9.99378 -9.84002 -9.73835 -9.38355 -8.64484 -8.06252 -7.69687 -7.29571 -6.18124 -4.20962 2.26909 2.29539 3.22282 3.31304 3.35661 4.29521 4.61115 4.82129 4.93557 4.96813 5.02839 5.17385 5.29793 5.61808 5.64441 5.74517 5.81226 5.83195 5.97061 6.05667 6.11900 6.26526 6.26838 6.38121 6.42088 6.49033 6.50986 6.67787 6.78767 6.86543 6.97929 7.24721 7.30599 7.38102 7.69379 7.72192 7.79414 8.01386 8.11118 8.44531 8.91862 9.42856 10.87911 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.008651 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.766639 B = 3235.730800 C = 4706.603759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.232 3.768 10 H 0.044 0.956 11 C -0.025 4.025 12 C -0.103 4.103 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.130 4.130 16 C -0.119 4.119 17 N -0.533 5.533 18 C 0.053 3.947 19 C -0.136 4.136 20 C 0.088 3.912 21 F -0.223 7.223 22 C -0.140 4.140 23 C 0.073 3.927 24 H 0.263 0.737 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -8.010 -0.034 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.127 3.873 10 H 0.062 0.938 11 C -0.026 4.026 12 C -0.121 4.121 13 C -0.154 4.154 14 C -0.170 4.170 15 C -0.148 4.148 16 C -0.137 4.137 17 N -0.259 5.259 18 C -0.075 4.075 19 C -0.175 4.175 20 C 0.052 3.948 21 F -0.204 7.204 22 C -0.178 4.178 23 C -0.055 4.055 24 H 0.073 0.927 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.794 -7.935 -0.163 8.137 hybrid contribution -0.458 1.057 0.105 1.157 sum 1.336 -6.878 -0.058 7.007 Atomic orbital electron populations 1.69914 1.06014 1.26992 1.49333 1.24995 0.94878 0.99479 0.94329 0.86487 0.80368 0.83309 0.77625 1.19449 1.20899 1.21002 1.20951 0.93990 0.88855 1.49692 0.91596 1.18503 0.95659 0.88324 0.84813 0.93845 1.20488 0.91806 0.91760 0.98587 1.20983 0.98585 0.98631 0.93915 1.21019 0.97400 1.02031 0.94917 1.20819 0.93875 1.03476 0.98867 1.20959 0.97573 1.00852 0.95460 1.21090 0.98784 1.00006 0.93864 1.62083 1.55020 1.01737 1.07010 1.21986 0.94689 0.90548 1.00295 1.22148 1.02754 0.98851 0.93714 1.21726 0.93754 0.86956 0.92377 1.92765 1.78150 1.67134 1.82383 1.22231 1.01530 0.93535 1.00515 1.21758 0.97437 0.98727 0.87582 0.92699 0.86195 0.87605 0.87783 0.87616 0.86568 0.90410 0.95869 0.90308 0.91546 0.90726 0.91391 0.90365 0.95874 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 12.77 55.43 0.71 -23.16 16 2 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.58 6.91 -34.44 -0.24 -12.82 16 8 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.23 5.35 1.84 -70.02 -0.13 5.22 16 10 H 0.04 1.13 7.02 -51.93 -0.36 0.77 16 11 C -0.03 -0.55 3.47 -104.62 -0.36 -0.91 16 12 C -0.10 -2.05 8.46 -39.58 -0.33 -2.39 16 13 C -0.14 -2.40 10.05 -39.58 -0.40 -2.80 16 14 C -0.15 -2.61 10.05 -39.59 -0.40 -3.01 16 15 C -0.13 -2.39 10.05 -39.59 -0.40 -2.78 16 16 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 17 N -0.53 -10.55 4.04 -229.48 -0.93 -11.48 16 18 C 0.05 0.93 5.13 -3.83 -0.02 0.91 16 19 C -0.14 -2.04 5.83 -26.65 -0.16 -2.19 16 20 C 0.09 1.31 3.95 -26.61 -0.10 1.21 16 21 F -0.22 -3.51 17.09 2.25 0.04 -3.48 16 22 C -0.14 -2.17 5.83 -26.65 -0.16 -2.33 16 23 C 0.07 1.37 5.27 -3.83 -0.02 1.35 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.12 2.41 7.91 -52.49 -0.42 1.99 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.12 2.55 7.99 -52.49 -0.42 2.13 16 30 H 0.08 1.40 6.22 -51.93 -0.32 1.07 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.96 6.89 -51.93 -0.36 1.61 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -26.29 310.04 -9.38 -35.67 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.65 Total: 4.07 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -3.19 Total: -21.79 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.22 Total: -34.64 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.29 -9.38 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689902903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.784 kcal (2) G-P(sol) polarization free energy of solvation -26.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds