Wall clock time and date at job start Mon Mar 30 2020 07:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99722 * 2 1 4 4 H 1.48504 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47713 * 300.00295 * 3 2 1 6 6 H 1.48498 * 109.47332 * 60.00448 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 186.54873 * 7 2 1 9 9 C 1.50695 * 120.00164 * 6.53976 * 7 2 1 10 10 H 1.09000 * 109.47543 * 335.14411 * 9 7 2 11 11 C 1.50703 * 109.46813 * 95.14139 * 9 7 2 12 12 C 1.38232 * 119.99902 * 73.80983 * 11 9 7 13 13 C 1.38241 * 120.00026 * 179.76690 * 12 11 9 14 14 C 1.38231 * 119.99551 * 0.49900 * 13 12 11 15 15 C 1.38229 * 120.00400 * 359.75184 * 14 13 12 16 16 C 1.38234 * 120.00133 * 359.97438 * 15 14 13 17 17 N 1.46901 * 109.47507 * 215.13978 * 9 7 2 18 18 C 1.46843 * 111.00073 * 184.21014 * 17 9 7 19 19 C 1.53041 * 109.52175 * 174.16106 * 18 17 9 20 20 C 1.53122 * 109.27557 * 59.18276 * 19 18 17 21 21 F 1.39904 * 109.52012 * 182.43998 * 20 19 18 22 22 C 1.53120 * 109.15887 * 302.34326 * 20 19 18 23 23 C 1.46848 * 110.99410 * 60.00273 * 17 9 7 24 24 H 0.97000 * 119.99932 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00241 * 359.97438 * 12 11 9 26 26 H 1.08001 * 119.99686 * 180.23360 * 13 12 11 27 27 H 1.08006 * 119.99641 * 179.72800 * 14 13 12 28 28 H 1.08004 * 120.00245 * 179.97438 * 15 14 13 29 29 H 1.07996 * 120.00615 * 179.97438 * 16 15 14 30 30 H 1.09002 * 109.46164 * 54.15045 * 18 17 9 31 31 H 1.08999 * 109.46341 * 294.17867 * 18 17 9 32 32 H 1.08999 * 109.50592 * 299.24082 * 19 18 17 33 33 H 1.09000 * 109.50265 * 179.11940 * 19 18 17 34 34 H 1.09003 * 109.52779 * 62.25072 * 20 19 18 35 35 H 1.09003 * 109.50094 * 177.59819 * 22 20 19 36 36 H 1.09000 * 109.50811 * 297.71350 * 22 20 19 37 37 H 1.08997 * 109.46542 * 65.82727 * 23 17 9 38 38 H 1.09002 * 109.46542 * 305.85405 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0793 -1.1972 0.1061 9 6 1.2585 -2.4948 -0.1497 10 1 0.2310 -2.3655 0.1905 11 6 1.2593 -2.9110 -1.5982 12 6 2.4133 -3.4092 -2.1735 13 6 2.4127 -3.7955 -3.5008 14 6 1.2610 -3.6739 -4.2555 15 6 0.1085 -3.1709 -3.6816 16 6 0.1074 -2.7899 -2.3528 17 7 1.9150 -3.5314 0.6579 18 6 1.2742 -4.8377 0.4594 19 6 2.0703 -5.9155 1.1989 20 6 2.1210 -5.5724 2.6904 21 9 2.8944 -6.5246 3.3630 22 6 2.7484 -4.1867 2.8662 23 6 1.9327 -3.1591 2.0783 24 1 -0.4850 0.8401 0.0004 25 1 3.3144 -3.4998 -1.5851 26 1 3.3134 -4.1882 -3.9492 27 1 1.2618 -3.9716 -5.2937 28 1 -0.7913 -3.0755 -4.2714 29 1 -0.7929 -2.3965 -1.9045 30 1 1.2484 -5.0715 -0.6049 31 1 0.2568 -4.8061 0.8490 32 1 3.0839 -5.9571 0.8004 33 1 1.5857 -6.8825 1.0643 34 1 1.1101 -5.5689 3.0980 35 1 2.7483 -3.9187 3.9227 36 1 3.7727 -4.2011 2.4939 37 1 0.9122 -3.1354 2.4604 38 1 2.3851 -2.1737 2.1899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689902903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:55 Heat of formation + Delta-G solvation = -45.600202 kcal Electronic energy + Delta-G solvation = -20327.228228 eV Core-core repulsion = 17275.542921 eV Total energy + Delta-G solvation = -3051.685306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.58511 -40.45172 -38.87860 -35.53605 -33.58117 -31.92534 -31.53157 -31.11905 -28.33462 -25.45133 -24.09674 -23.56350 -23.07047 -21.50275 -20.77930 -18.45827 -17.46738 -17.38396 -16.94802 -16.43422 -16.02098 -15.87012 -15.65937 -15.52136 -15.06299 -14.64326 -14.15324 -13.99101 -13.86822 -13.41265 -13.33065 -13.12124 -12.96457 -12.86657 -12.68230 -12.34808 -12.16831 -11.95195 -11.75631 -11.60186 -11.30638 -11.23445 -11.03653 -10.62339 -9.56605 -9.26964 -8.95769 -8.14958 -6.23884 0.75182 0.79526 1.37782 1.41344 1.51643 2.38919 3.01782 3.25954 3.36655 3.63028 3.67573 3.74197 4.05934 4.24312 4.28767 4.33351 4.40218 4.45186 4.55750 4.63479 4.76613 4.83268 4.91896 4.94148 5.00149 5.04046 5.14204 5.19021 5.29181 5.36273 5.44722 5.49473 5.70003 5.81780 5.84855 6.08893 6.11613 6.35419 6.45553 6.74533 6.94669 7.42602 8.89633 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.008651 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.766639 B = 3235.730800 C = 4706.603759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.499 4.499 8 H 0.055 0.945 9 C 0.241 3.759 10 H 0.001 0.999 11 C -0.046 4.046 12 C -0.113 4.113 13 C -0.129 4.129 14 C -0.143 4.143 15 C -0.129 4.129 16 C -0.143 4.143 17 N -0.534 5.534 18 C 0.058 3.942 19 C -0.128 4.128 20 C 0.092 3.908 21 F -0.223 7.223 22 C -0.130 4.130 23 C 0.075 3.925 24 H 0.262 0.738 25 H 0.114 0.886 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -9.441 -1.264 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.135 3.865 10 H 0.019 0.981 11 C -0.048 4.048 12 C -0.132 4.132 13 C -0.147 4.147 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.162 4.162 17 N -0.259 5.259 18 C -0.071 4.071 19 C -0.166 4.166 20 C 0.056 3.944 21 F -0.204 7.204 22 C -0.168 4.168 23 C -0.053 4.053 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.030 0.970 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.984 -9.381 -1.384 9.941 hybrid contribution -0.831 1.426 0.440 1.708 sum 2.153 -7.955 -0.944 8.295 Atomic orbital electron populations 1.70038 1.07139 1.27322 1.50972 1.25642 0.95519 1.02209 0.94525 0.85637 0.79373 0.80038 0.77439 1.19019 1.21086 1.20582 1.21111 0.93478 0.90225 1.48971 0.92629 1.18212 0.93071 0.88710 0.86521 0.98082 1.20358 0.93040 0.93684 0.97679 1.20983 0.97555 0.99372 0.95277 1.21391 0.99014 1.00515 0.93738 1.21266 0.92711 1.01502 1.00570 1.21253 0.99370 0.99821 0.94267 1.21060 0.97935 1.01687 0.95513 1.62057 1.54632 1.02041 1.07171 1.21971 0.94682 0.89957 1.00465 1.22082 1.02432 0.98773 0.93301 1.21677 0.94164 0.86205 0.92382 1.92767 1.78267 1.67021 1.82360 1.22125 1.00645 0.93131 1.00924 1.21702 0.97165 0.98847 0.87587 0.92929 0.86779 0.84212 0.83773 0.85091 0.89021 0.90907 0.96572 0.90345 0.89140 0.89507 0.89539 0.90507 0.97021 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.61 12.77 21.45 0.27 -51.33 16 2 C 0.02 1.14 5.45 84.65 0.46 1.60 16 3 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.50 -26.26 6.91 25.60 0.18 -26.09 16 8 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 9 C 0.24 11.62 1.84 43.42 0.08 11.70 16 10 H 0.00 0.07 7.02 -2.39 -0.02 0.06 16 11 C -0.05 -2.06 3.47 -19.86 -0.07 -2.13 16 12 C -0.11 -4.45 8.46 22.27 0.19 -4.26 16 13 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 14 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 15 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 16 C -0.14 -6.16 9.67 22.27 0.22 -5.94 16 17 N -0.53 -21.71 4.04 -879.93 -3.56 -25.27 16 18 C 0.06 2.00 5.13 86.33 0.44 2.45 16 19 C -0.13 -3.59 5.83 30.65 0.18 -3.41 16 20 C 0.09 2.56 3.95 30.68 0.12 2.69 16 21 F -0.22 -6.46 17.09 44.97 0.77 -5.69 16 22 C -0.13 -3.93 5.83 30.65 0.18 -3.75 16 23 C 0.08 2.89 5.27 86.33 0.45 3.35 16 24 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.11 4.53 7.91 -2.91 -0.02 4.51 16 26 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 29 H 0.09 4.29 7.99 -2.91 -0.02 4.27 16 30 H 0.07 2.61 6.22 -2.39 -0.01 2.60 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 3.08 6.89 -2.39 -0.02 3.06 16 Total: -1.00 -58.36 310.04 3.64 -54.72 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.03 Total: 18.68 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.10 Total: -36.18 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.28 Total: -76.60 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.77 Total: -5.69 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -58.36 3.64 -54.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689902903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.119 kcal (2) G-P(sol) polarization free energy of solvation -58.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds