Wall clock time and date at job start Mon Mar 30 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47117 * 2 1 4 4 C 1.52996 * 109.47043 * 120.00398 * 2 1 3 5 5 C 1.50701 * 109.47146 * 185.00118 * 4 2 1 6 6 H 1.08004 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00523 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00455 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99490 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47341 * 90.00059 * 9 7 5 11 11 H 1.48502 * 109.46792 * 209.99785 * 9 7 5 12 12 H 1.48496 * 109.47050 * 329.99443 * 9 7 5 13 13 N 1.46507 * 109.47034 * 240.00447 * 2 1 3 14 14 C 1.46497 * 119.99680 * 306.24747 * 13 2 1 15 15 C 1.50703 * 109.47052 * 269.99818 * 14 13 2 16 16 O 1.20827 * 119.99793 * 0.02562 * 15 14 13 17 17 O 1.34224 * 120.00362 * 180.02562 * 15 14 13 18 18 C 1.39676 * 119.99844 * 126.24855 * 13 2 1 19 19 C 1.38913 * 120.07373 * 354.32143 * 18 13 2 20 20 C 1.38101 * 119.92297 * 180.02562 * 19 18 13 21 21 C 1.38285 * 120.07657 * 0.02562 * 20 19 18 22 22 C 1.38287 * 120.14703 * 0.26678 * 21 20 19 23 23 C 1.38107 * 120.07578 * 359.45777 * 22 21 20 24 24 H 1.08998 * 109.47573 * 299.99493 * 1 2 3 25 25 H 1.09004 * 109.47466 * 60.00036 * 1 2 3 26 26 H 1.09007 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47446 * 304.99681 * 4 2 1 28 28 H 1.09004 * 109.47290 * 65.00281 * 4 2 1 29 29 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47789 * 29.99731 * 14 13 2 31 31 H 1.08999 * 109.46777 * 150.00693 * 14 13 2 32 32 H 0.96697 * 117.00710 * 180.02562 * 17 15 14 33 33 H 1.07999 * 120.03617 * 0.02562 * 19 18 13 34 34 H 1.08002 * 119.96351 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.93013 * 180.02562 * 21 20 19 36 36 H 1.08008 * 119.96264 * 179.70552 * 22 21 20 37 37 H 1.08001 * 120.03561 * 180.27481 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1927 2.3582 8 7 5.5411 -1.1003 2.4134 9 14 3.3014 -2.1080 3.6957 10 1 3.1708 -3.5381 3.3178 11 1 4.0447 -2.0004 4.9768 12 1 1.9504 -1.5129 3.8559 13 7 2.0183 -0.6906 -1.1963 14 6 1.5552 -2.0469 -1.4994 15 6 2.4767 -3.0487 -0.8525 16 8 3.4230 -2.6685 -0.2045 17 8 2.2464 -4.3632 -0.9963 18 6 2.9254 -0.0557 -2.0477 19 6 3.2752 1.2707 -1.8281 20 6 4.1720 1.8955 -2.6722 21 6 4.7212 1.2026 -3.7354 22 6 4.3706 -0.1160 -3.9605 23 6 3.4787 -0.7487 -3.1169 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7516 -1.7716 1.2054 29 1 6.0255 -1.5071 3.1487 30 1 0.5447 -2.1807 -1.1132 31 1 1.5547 -2.1979 -2.5788 32 1 2.8645 -4.9673 -0.5627 33 1 2.8463 1.8125 -0.9981 34 1 4.4447 2.9265 -2.5017 35 1 5.4227 1.6934 -4.3938 36 1 4.7978 -0.6530 -4.7946 37 1 3.2087 -1.7799 -3.2907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695716946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:55 Heat of formation + Delta-G solvation = -64.314262 kcal Electronic energy + Delta-G solvation = -20878.093896 eV Core-core repulsion = 17813.224298 eV Total energy + Delta-G solvation = -3064.869598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32866 -40.04144 -37.95852 -36.59651 -34.88069 -33.34285 -31.79229 -30.78380 -29.65135 -27.84652 -24.80481 -23.69913 -23.01201 -22.00567 -20.26844 -19.03395 -18.68708 -18.58084 -17.37421 -16.89398 -16.42713 -16.28512 -15.97897 -15.28192 -15.01502 -14.72933 -14.35686 -14.27539 -13.86144 -13.76071 -13.62574 -13.41100 -12.96641 -12.91119 -12.58813 -12.35280 -12.11018 -11.96886 -11.79817 -11.74579 -11.44168 -11.15527 -11.07217 -10.59203 -10.53038 -9.68767 -8.11221 -8.05529 -5.99187 0.67052 0.83918 1.28756 1.30068 1.38887 1.61006 2.05842 2.43447 2.57113 3.15582 3.31495 3.91665 4.00398 4.21658 4.31050 4.33558 4.38522 4.51993 4.60500 4.66275 4.72573 4.77442 4.92175 4.99965 5.08401 5.14657 5.26475 5.32994 5.44399 5.54181 5.72567 5.81416 5.84805 5.93002 6.13642 6.44053 6.52810 6.71188 6.99633 7.33768 7.56617 9.11184 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.008635 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.229370 B = 3242.024208 C = 3549.292804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.079 0.921 4 C -0.021 4.021 5 C -0.438 4.438 6 H 0.029 0.971 7 C 0.005 3.995 8 N -0.963 5.963 9 Si 0.929 3.071 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.245 1.245 13 N -0.591 5.591 14 C 0.138 3.862 15 C 0.409 3.591 16 O -0.482 6.482 17 O -0.528 6.528 18 C 0.221 3.779 19 C -0.208 4.208 20 C -0.085 4.085 21 C -0.193 4.193 22 C -0.081 4.081 23 C -0.215 4.215 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.007 0.993 29 H 0.252 0.748 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.412 0.588 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 -0.492 -11.926 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.059 4.059 5 C -0.477 4.477 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.608 5.608 9 Si 0.756 3.244 10 H -0.212 1.212 11 H -0.222 1.222 12 H -0.169 1.169 13 N -0.300 5.300 14 C 0.012 3.988 15 C 0.247 3.753 16 O -0.366 6.366 17 O -0.341 6.341 18 C 0.119 3.881 19 C -0.230 4.230 20 C -0.103 4.103 21 C -0.213 4.213 22 C -0.100 4.100 23 C -0.237 4.237 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.271 0.729 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.615 -0.216 -11.698 16.486 hybrid contribution 1.027 -1.153 1.548 2.187 sum -10.588 -1.370 -10.149 14.731 Atomic orbital electron populations 1.22135 0.92887 1.02855 1.03156 1.21123 0.94296 0.96204 0.83541 0.90336 1.20016 0.95318 0.95626 0.94953 1.20903 0.91157 1.30126 1.05495 0.95252 1.25629 0.95053 0.97542 1.00598 1.70085 1.08394 1.49053 1.33276 0.85997 0.80084 0.79289 0.79046 1.21180 1.22173 1.16875 1.46262 1.46575 1.12671 1.24466 1.20991 0.96691 0.78890 1.02242 1.25405 0.87150 0.82938 0.79850 1.91202 1.29860 1.79726 1.35787 1.84446 1.58492 1.18311 1.72837 1.17982 0.88935 0.91699 0.89486 1.20879 1.04784 0.94598 1.02764 1.21138 0.94871 1.00228 0.94100 1.21128 1.04148 0.95567 1.00478 1.21140 0.95446 0.94929 0.98462 1.20787 1.04084 1.00218 0.98625 0.90775 0.90800 0.91631 0.95996 0.97476 0.93956 0.84517 0.84825 0.72875 0.86649 0.84900 0.84487 0.84154 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.04 71.98 0.65 -3.19 16 2 C 0.15 5.44 2.53 44.99 0.11 5.55 16 3 H 0.08 2.99 5.32 -2.39 -0.01 2.97 16 4 C -0.02 -0.96 3.01 29.85 0.09 -0.87 16 5 C -0.44 -25.36 6.70 25.60 0.17 -25.19 16 6 H 0.03 1.93 7.44 -2.91 -0.02 1.91 16 7 C 0.01 0.31 5.36 84.65 0.45 0.77 16 8 N -0.96 -64.58 13.96 21.45 0.30 -64.28 16 9 Si 0.93 47.26 27.47 68.60 1.88 49.14 16 10 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 13 N -0.59 -20.51 1.84 -677.67 -1.25 -21.76 16 14 C 0.14 3.92 5.21 85.63 0.45 4.36 16 15 C 0.41 14.67 7.30 71.24 0.52 15.19 16 16 O -0.48 -23.69 12.95 21.96 0.28 -23.40 16 17 O -0.53 -15.00 13.42 -51.36 -0.69 -15.69 16 18 C 0.22 8.14 6.24 38.21 0.24 8.38 16 19 C -0.21 -7.74 9.07 22.40 0.20 -7.54 16 20 C -0.08 -2.77 10.04 22.25 0.22 -2.55 16 21 C -0.19 -5.76 10.04 22.29 0.22 -5.54 16 22 C -0.08 -2.43 10.04 22.25 0.22 -2.21 16 23 C -0.21 -7.17 9.16 22.40 0.21 -6.97 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 1.48 6.49 -2.38 -0.02 1.46 16 27 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 28 H 0.01 0.32 5.74 -2.39 -0.01 0.31 16 29 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.14 3.07 6.12 -2.39 -0.01 3.05 16 31 H 0.13 2.99 6.45 -2.39 -0.02 2.97 16 32 H 0.41 9.72 9.10 -74.06 -0.67 9.05 16 33 H 0.12 4.33 5.74 -2.91 -0.02 4.31 16 34 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.12 3.63 6.26 -2.91 -0.02 3.61 16 Total: -1.00 -79.69 298.76 4.66 -75.03 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.37 Total: 20.75 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 3.76 Total: -19.80 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -0.95 Total: -86.03 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.41 Total: -39.09 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.14 kcal Total: -79.69 4.66 -75.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695716946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.719 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds