Wall clock time and date at job start Mon Mar 30 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.09004 * 109.47058 * 35.00296 * 14 13 2 16 16 C 1.50700 * 109.47267 * 274.99957 * 14 13 2 17 17 O 1.20829 * 119.99813 * 359.97438 * 16 14 13 18 18 O 1.34226 * 119.99803 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.46989 * 155.00047 * 14 13 2 20 20 C 1.38240 * 120.00017 * 39.72390 * 19 14 13 21 21 C 1.38240 * 119.99688 * 179.80670 * 20 19 14 22 22 C 1.38235 * 120.00158 * 0.40394 * 21 20 19 23 23 C 1.38233 * 119.99857 * 359.85666 * 22 21 20 24 24 C 1.38232 * 120.00135 * 359.94808 * 23 22 21 25 25 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 26 26 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 28 28 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 29 29 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 32 32 H 0.96709 * 116.99487 * 179.97438 * 18 16 14 33 33 H 1.07995 * 119.99795 * 0.02562 * 20 19 14 34 34 H 1.07999 * 119.99491 * 180.22842 * 21 20 19 35 35 H 1.08002 * 119.99739 * 179.82676 * 22 21 20 36 36 H 1.08002 * 120.00058 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.99792 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4774 0.1464 3.1851 11 1 6.6428 -2.2718 3.1122 12 1 6.6395 -0.9939 1.0512 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 2.3649 1.2175 -2.0031 16 6 0.7324 0.2857 -3.0135 17 8 -0.1877 -0.3651 -2.5776 18 8 0.5522 1.0643 -4.0919 19 6 3.1065 -0.2779 -3.3328 20 6 3.2144 -1.6318 -3.5902 21 6 4.1511 -2.0903 -4.4976 22 6 4.9855 -1.1957 -5.1414 23 6 4.8811 0.1576 -4.8800 24 6 3.9417 0.6165 -3.9757 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7515 -1.7715 1.2057 29 1 1.6053 -0.2617 2.1370 30 1 4.0614 -2.2527 4.0299 31 1 1.4494 -1.4980 -1.4100 32 1 -0.3312 1.0718 -4.4853 33 1 2.5646 -2.3309 -3.0849 34 1 4.2330 -3.1478 -4.7013 35 1 5.7191 -1.5543 -5.8482 36 1 5.5332 0.8566 -5.3827 37 1 3.8600 1.6740 -3.7718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695718668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:00 Heat of formation + Delta-G solvation = -65.091045 kcal Electronic energy + Delta-G solvation = -20002.069039 eV Core-core repulsion = 16937.165757 eV Total energy + Delta-G solvation = -3064.903282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64277 -38.85766 -36.91189 -35.68040 -33.27963 -31.97778 -30.77160 -29.24449 -27.19213 -26.10253 -23.03778 -22.50868 -22.36064 -20.44352 -19.83619 -18.07070 -17.01007 -16.81271 -16.07744 -15.86115 -15.15988 -14.75412 -14.41557 -14.05177 -13.86323 -13.26003 -13.17536 -12.75751 -12.55840 -12.35953 -12.11246 -11.90395 -11.49808 -11.26278 -11.08488 -10.95308 -10.83675 -10.67451 -10.54464 -10.30066 -10.05459 -9.24199 -8.98853 -8.75003 -8.59135 -8.23923 -7.95094 -5.85921 -3.83955 1.43186 1.57696 2.24396 3.13316 3.40517 3.46835 3.52326 3.93383 4.56732 4.59110 4.83899 5.00630 5.10848 5.25724 5.34235 5.37359 5.51500 5.65562 5.75499 5.84749 6.00594 6.07342 6.13046 6.18759 6.37587 6.53133 6.58198 6.64458 6.73150 6.78157 7.01186 7.12138 7.37728 7.61873 7.87786 7.94586 7.98359 8.14205 8.59590 9.21214 9.77593 11.26086 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.007207 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.298187 B = 3883.973707 C = 5228.995781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.066 0.934 4 C 0.034 3.966 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.625 5.625 14 C 0.137 3.863 15 H 0.121 0.879 16 C 0.448 3.552 17 O -0.505 6.505 18 O -0.515 6.515 19 C -0.064 4.064 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.100 4.100 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.257 0.743 31 H 0.346 0.654 32 H 0.400 0.600 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 4.532 -17.315 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.084 0.916 4 C -0.003 4.003 5 C -0.529 4.529 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.256 5.256 14 C 0.024 3.976 15 H 0.138 0.862 16 C 0.289 3.711 17 O -0.393 6.393 18 O -0.325 6.325 19 C -0.064 4.064 20 C -0.107 4.107 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.118 4.118 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.258 0.742 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.633 4.314 -16.667 17.294 hybrid contribution -0.511 0.035 -0.229 0.561 sum -2.144 4.348 -16.896 17.578 Atomic orbital electron populations 1.22732 0.98343 1.02012 1.00784 1.22014 0.90897 0.97942 0.91651 0.91597 1.19106 0.96234 0.95512 0.89431 1.21151 0.91785 1.32912 1.07030 0.92295 1.24994 0.97959 0.95851 0.96043 1.69962 1.35190 1.36808 1.12465 0.86653 0.86500 0.77183 0.78007 1.21052 1.21556 1.19872 1.61063 1.56822 1.07400 1.00347 1.20504 0.86342 1.00327 0.90450 0.86184 1.25287 0.92799 0.75485 0.77578 1.90709 1.43894 1.42310 1.62359 1.84637 1.39985 1.64315 1.43599 1.19341 0.96900 0.93941 0.96261 1.20985 0.98406 0.95006 0.96257 1.21104 0.96238 0.99587 0.97205 1.21116 0.99185 0.93554 1.00048 1.21032 0.98772 0.95687 0.98791 1.20959 0.95183 0.99350 0.96323 0.93071 0.92774 0.93143 0.96317 0.96129 0.93333 0.83256 0.74199 0.85866 0.86169 0.86421 0.86205 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.00 37.16 0.30 -3.00 16 2 C 0.08 1.70 2.53 -67.71 -0.17 1.53 16 3 H 0.07 1.32 7.43 -51.93 -0.39 0.93 16 4 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 5 C -0.49 -13.77 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.63 -11.64 5.19 -102.17 -0.53 -12.17 16 14 C 0.14 2.11 2.70 -70.02 -0.19 1.92 16 15 H 0.12 1.77 7.29 -51.93 -0.38 1.39 16 16 C 0.45 6.41 6.89 36.01 0.25 6.66 16 17 O -0.50 -8.30 13.17 -18.75 -0.25 -8.55 16 18 O -0.52 -5.81 13.34 -39.25 -0.52 -6.33 16 19 C -0.06 -0.94 4.88 -104.62 -0.51 -1.45 16 20 C -0.09 -1.30 9.32 -39.58 -0.37 -1.67 16 21 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 24 C -0.10 -1.31 9.67 -39.58 -0.38 -1.70 16 25 H 0.05 0.88 5.08 -51.93 -0.26 0.62 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.35 6.40 6.86 -39.29 -0.27 6.13 16 32 H 0.40 2.81 9.10 45.56 0.41 3.22 16 33 H 0.12 1.82 7.24 -52.49 -0.38 1.44 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.39 8.04 -52.48 -0.42 0.96 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -32.62 312.74 -7.86 -40.47 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.18 Total: 6.80 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.80 Total: -15.37 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.21 Total: -38.96 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.77 Total: -14.88 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.62 -7.86 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695718668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.617 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds