Wall clock time and date at job start Mon Mar 30 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 H 1.09004 * 109.47058 * 35.00296 * 14 13 2 16 16 C 1.50700 * 109.47267 * 274.99957 * 14 13 2 17 17 O 1.20829 * 119.99813 * 359.97438 * 16 14 13 18 18 O 1.34226 * 119.99803 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.46989 * 155.00047 * 14 13 2 20 20 C 1.38240 * 120.00017 * 39.72390 * 19 14 13 21 21 C 1.38240 * 119.99688 * 179.80670 * 20 19 14 22 22 C 1.38235 * 120.00158 * 0.40394 * 21 20 19 23 23 C 1.38233 * 119.99857 * 359.85666 * 22 21 20 24 24 C 1.38232 * 120.00135 * 359.94808 * 23 22 21 25 25 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 26 26 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 28 28 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 29 29 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 32 32 H 0.96709 * 116.99487 * 179.97438 * 18 16 14 33 33 H 1.07995 * 119.99795 * 0.02562 * 20 19 14 34 34 H 1.07999 * 119.99491 * 180.22842 * 21 20 19 35 35 H 1.08002 * 119.99739 * 179.82676 * 22 21 20 36 36 H 1.08002 * 120.00058 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.99792 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4774 0.1464 3.1851 11 1 6.6428 -2.2718 3.1122 12 1 6.6395 -0.9939 1.0512 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 1 2.3649 1.2175 -2.0031 16 6 0.7324 0.2857 -3.0135 17 8 -0.1877 -0.3651 -2.5776 18 8 0.5522 1.0643 -4.0919 19 6 3.1065 -0.2779 -3.3328 20 6 3.2144 -1.6318 -3.5902 21 6 4.1511 -2.0903 -4.4976 22 6 4.9855 -1.1957 -5.1414 23 6 4.8811 0.1576 -4.8800 24 6 3.9417 0.6165 -3.9757 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7515 -1.7715 1.2057 29 1 1.6053 -0.2617 2.1370 30 1 4.0614 -2.2527 4.0299 31 1 1.4494 -1.4980 -1.4100 32 1 -0.3312 1.0718 -4.4853 33 1 2.5646 -2.3309 -3.0849 34 1 4.2330 -3.1478 -4.7013 35 1 5.7191 -1.5543 -5.8482 36 1 5.5332 0.8566 -5.3827 37 1 3.8600 1.6740 -3.7718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695718668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:00 Heat of formation + Delta-G solvation = -86.498802 kcal Electronic energy + Delta-G solvation = -20002.997349 eV Core-core repulsion = 16937.165757 eV Total energy + Delta-G solvation = -3065.831592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79178 -39.85894 -38.24869 -36.90143 -35.03581 -33.66176 -31.74895 -30.60824 -29.10012 -27.34738 -25.03205 -23.53296 -23.42752 -21.59271 -21.45149 -19.14815 -18.45189 -18.06585 -17.82203 -17.00329 -16.49755 -16.31681 -15.76605 -15.32293 -15.14353 -14.59278 -14.34965 -14.16358 -13.93526 -13.67433 -13.53638 -13.36353 -13.19098 -12.86824 -12.57595 -12.52719 -12.22439 -12.06044 -11.99128 -11.82606 -11.73881 -11.12861 -11.00242 -10.47731 -9.73709 -9.61567 -9.41619 -8.08201 -6.13229 0.43032 0.59137 1.12121 1.42552 1.44105 1.55466 2.09835 2.48839 2.88113 3.21743 3.32099 3.71994 3.91220 4.19028 4.21246 4.29885 4.33453 4.38099 4.47223 4.57802 4.71687 4.79938 4.88783 5.09500 5.18585 5.22066 5.25703 5.46097 5.54162 5.61126 5.62907 5.68386 5.73805 5.90140 6.13433 6.19568 6.32556 6.47340 6.95502 7.00435 7.52556 9.04209 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.007207 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.298187 B = 3883.973707 C = 5228.995781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 H 0.072 0.928 4 C 0.040 3.960 5 C -0.497 4.497 6 H 0.061 0.939 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.640 5.640 14 C 0.138 3.862 15 H 0.128 0.872 16 C 0.460 3.540 17 O -0.531 6.531 18 O -0.504 6.504 19 C -0.082 4.082 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.109 4.109 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.052 0.948 28 H -0.012 1.012 29 H -0.004 1.004 30 H 0.258 0.742 31 H 0.343 0.657 32 H 0.422 0.578 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 5.811 -19.481 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 H 0.090 0.910 4 C 0.003 3.997 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.271 5.271 14 C 0.025 3.975 15 H 0.145 0.855 16 C 0.301 3.699 17 O -0.421 6.421 18 O -0.316 6.316 19 C -0.083 4.083 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.127 4.127 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.014 0.986 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.284 0.716 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.210 5.620 -18.874 19.694 hybrid contribution -0.968 -0.349 0.335 1.082 sum -1.178 5.271 -18.538 19.309 Atomic orbital electron populations 1.22595 0.96807 1.01575 1.01610 1.21675 0.91991 0.97287 0.90362 0.91002 1.18961 0.95376 0.94077 0.91330 1.21479 0.93020 1.32283 1.06755 0.92087 1.25868 1.02928 0.95647 0.95796 1.70102 1.37118 1.37965 1.13223 0.85569 0.80578 0.77352 0.78250 1.19999 1.21432 1.19119 1.60871 1.57007 1.08081 1.01155 1.20416 0.87461 0.99811 0.89798 0.85482 1.24835 0.91880 0.75244 0.77931 1.90706 1.44497 1.43495 1.63410 1.84555 1.41782 1.62974 1.42285 1.19381 0.97622 0.94325 0.96947 1.21057 0.99462 0.95115 0.97504 1.21371 0.95968 1.00864 0.96847 1.21506 0.99027 0.93506 0.99849 1.21434 0.98391 0.96358 0.98059 1.21232 0.95033 1.00019 0.96414 0.91490 0.93860 0.92939 0.99329 0.98591 0.93319 0.83605 0.71642 0.87237 0.84655 0.83563 0.83270 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.16 8.00 71.98 0.58 -5.58 16 2 C 0.10 3.95 2.53 44.91 0.11 4.06 16 3 H 0.07 2.85 7.43 -2.39 -0.02 2.83 16 4 C 0.04 2.12 4.65 29.85 0.14 2.26 16 5 C -0.50 -28.30 8.84 25.60 0.23 -28.08 16 6 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 9 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.64 -24.12 5.19 -477.17 -2.47 -26.60 16 14 C 0.14 4.14 2.70 43.42 0.12 4.26 16 15 H 0.13 3.58 7.29 -2.39 -0.02 3.56 16 16 C 0.46 12.58 6.89 71.24 0.49 13.07 16 17 O -0.53 -17.09 13.17 21.96 0.29 -16.80 16 18 O -0.50 -10.15 13.34 -51.38 -0.69 -10.84 16 19 C -0.08 -2.34 4.88 -19.86 -0.10 -2.44 16 20 C -0.11 -3.30 9.32 22.27 0.21 -3.09 16 21 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 22 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 23 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 24 C -0.11 -2.61 9.67 22.27 0.22 -2.39 16 25 H 0.07 2.27 5.08 -2.38 -0.01 2.25 16 26 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.34 13.12 6.86 -89.69 -0.61 12.51 16 32 H 0.42 4.76 9.10 -74.05 -0.67 4.09 16 33 H 0.11 3.37 7.24 -2.91 -0.02 3.35 16 34 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 2.76 8.04 -2.91 -0.02 2.73 16 Total: -1.00 -70.51 312.74 2.36 -68.14 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.20 Total: 22.17 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.12 Total: -25.51 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.19 Total: -84.96 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.40 Total: -27.64 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.51 2.36 -68.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695718668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.354 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds