Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.46970 * 2 1 4 4 C 1.52998 * 109.47196 * 239.99679 * 2 1 3 5 5 C 1.50697 * 109.47262 * 174.99808 * 4 2 1 6 6 H 1.08000 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00305 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99645 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47276 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47289 * 119.99831 * 9 7 5 12 12 H 1.48504 * 109.47358 * 239.99990 * 9 7 5 13 13 N 1.46907 * 109.46921 * 119.99851 * 2 1 3 14 14 C 1.46902 * 110.99670 * 274.99973 * 13 2 1 15 15 H 1.09000 * 109.46894 * 35.00466 * 14 13 2 16 16 C 1.50698 * 109.46927 * 274.99990 * 14 13 2 17 17 O 1.20824 * 120.00091 * 0.02562 * 16 14 13 18 18 O 1.34231 * 119.99710 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.46577 * 155.00233 * 14 13 2 20 20 C 1.38235 * 119.99800 * 39.72761 * 19 14 13 21 21 C 1.38240 * 119.99391 * 179.78556 * 20 19 14 22 22 C 1.38238 * 120.00239 * 0.44187 * 21 20 19 23 23 C 1.38233 * 119.99586 * 359.80942 * 22 21 20 24 24 C 1.38232 * 119.99662 * 219.99920 * 19 14 13 25 25 H 1.08995 * 109.47198 * 60.00243 * 1 2 3 26 26 H 1.09005 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47301 * 299.99833 * 1 2 3 28 28 H 1.08998 * 109.47282 * 295.00261 * 4 2 1 29 29 H 1.09004 * 109.47058 * 54.99906 * 4 2 1 30 30 H 0.97006 * 120.00024 * 180.02562 * 8 7 5 31 31 H 1.00892 * 110.99402 * 151.05001 * 13 2 1 32 32 H 0.96696 * 116.99892 * 180.02562 * 18 16 14 33 33 H 1.07997 * 120.00401 * 359.97438 * 20 19 14 34 34 H 1.07995 * 119.99874 * 180.27390 * 21 20 19 35 35 H 1.08001 * 119.99766 * 179.83529 * 22 21 20 36 36 H 1.08004 * 119.99658 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00225 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1927 -2.3582 8 7 3.5763 -1.8362 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.5839 -0.2929 -1.2649 11 1 6.6855 -2.4226 -2.4195 12 1 6.4871 -0.3649 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.0825 0.2227 2.3469 15 1 1.2576 0.9330 2.2906 16 6 3.3911 0.9695 2.3227 17 8 4.1894 0.7612 1.4400 18 8 3.6699 1.8662 3.2819 19 6 1.9786 -0.5676 3.6259 20 6 2.6283 -1.7822 3.7426 21 6 2.5366 -2.5049 4.9174 22 6 1.7878 -2.0174 5.9722 23 6 1.1339 -0.8053 5.8536 24 6 1.2290 -0.0805 4.6803 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1369 30 1 4.0607 -2.2430 -4.0359 31 1 2.9173 -1.1204 1.0288 32 1 4.5215 2.3205 3.2240 33 1 3.2100 -2.1650 2.9171 34 1 3.0477 -3.4517 5.0102 35 1 1.7140 -2.5834 6.8891 36 1 0.5492 -0.4242 6.6778 37 1 0.7182 0.8665 4.5877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695718672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = -72.849557 kcal Electronic energy + Delta-G solvation = -20060.505778 eV Core-core repulsion = 16995.266062 eV Total energy + Delta-G solvation = -3065.239716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40087 -38.84349 -36.76286 -35.55238 -33.27143 -31.94692 -30.82976 -29.27248 -27.37445 -26.03902 -23.05481 -22.49729 -22.32324 -20.33473 -19.50336 -17.84683 -16.92718 -16.76814 -16.14570 -15.61730 -15.13948 -14.76133 -14.48315 -14.25008 -13.86412 -13.28510 -13.21435 -12.76465 -12.60918 -12.12049 -11.86709 -11.58713 -11.34588 -11.26052 -11.19072 -10.96557 -10.84429 -10.75082 -10.49961 -10.42341 -10.14234 -9.18630 -8.94557 -8.81650 -8.63581 -8.31237 -8.02965 -5.92511 -3.92881 1.38090 1.51152 2.49377 3.28318 3.36369 3.44085 3.53401 3.90219 4.55177 4.60198 4.86147 4.98941 5.05937 5.21165 5.34131 5.45684 5.50153 5.63552 5.71304 5.87689 6.01075 6.10096 6.13659 6.21856 6.41482 6.51959 6.59579 6.69811 6.71161 6.86736 6.89194 7.06597 7.35373 7.73045 7.87551 8.04783 8.05040 8.21699 8.51977 9.21658 9.72311 11.18970 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005905 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.667775 B = 4740.286287 C = 4950.568967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.033 0.967 4 C 0.021 3.979 5 C -0.524 4.524 6 H 0.078 0.922 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.646 5.646 14 C 0.137 3.863 15 H 0.115 0.885 16 C 0.440 3.560 17 O -0.482 6.482 18 O -0.522 6.522 19 C -0.064 4.064 20 C -0.091 4.091 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.102 4.102 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.401 0.599 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 3.682 17.560 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.096 0.904 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.282 5.282 14 C 0.024 3.976 15 H 0.133 0.867 16 C 0.278 3.722 17 O -0.367 6.367 18 O -0.333 6.333 19 C -0.064 4.064 20 C -0.109 4.109 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.194 0.806 32 H 0.258 0.742 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.128 3.058 17.297 18.298 hybrid contribution 2.417 0.870 -0.531 2.623 sum -2.711 3.928 16.765 17.431 Atomic orbital electron populations 1.21846 0.96297 1.01712 0.99693 1.21751 0.93310 0.96263 0.91163 0.94873 1.19289 0.96072 0.95998 0.90301 1.21657 0.92065 1.33848 1.08703 0.90355 1.24983 0.98060 0.95404 0.95815 1.69993 1.35238 1.36370 1.12132 0.86611 0.86439 0.77633 0.77864 1.19527 1.21218 1.21320 1.61092 1.35116 1.28018 1.04001 1.20372 0.91634 0.93097 0.92535 0.86698 1.25108 0.90763 0.77698 0.78604 1.90855 1.48444 1.62548 1.34819 1.84585 1.43518 1.53246 1.51929 1.19402 0.98269 0.95340 0.93425 1.21081 0.98439 0.93939 0.97464 1.21131 0.99542 0.99966 0.93429 1.21123 0.97824 0.96368 0.98710 1.21033 1.00363 0.95382 0.97575 1.20954 0.98559 0.99632 0.92882 0.92942 0.92305 0.94444 0.95607 0.95930 0.93296 0.80647 0.74163 0.85556 0.86109 0.86417 0.86236 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.40 37.16 0.35 -2.03 16 2 C 0.08 1.73 2.23 -67.71 -0.15 1.58 16 3 H 0.03 0.71 7.63 -51.93 -0.40 0.32 16 4 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 5 C -0.52 -14.82 8.12 -34.44 -0.28 -15.10 16 6 H 0.08 2.22 5.06 -52.49 -0.27 1.95 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.65 -12.25 5.36 -102.17 -0.55 -12.80 16 14 C 0.14 2.17 2.52 -70.01 -0.18 1.99 16 15 H 0.12 1.65 6.97 -51.93 -0.36 1.29 16 16 C 0.44 7.39 7.31 36.00 0.26 7.65 16 17 O -0.48 -10.13 14.12 -18.75 -0.26 -10.40 16 18 O -0.52 -6.89 13.34 -39.26 -0.52 -7.41 16 19 C -0.06 -0.91 4.88 -104.62 -0.51 -1.42 16 20 C -0.09 -1.31 9.32 -39.58 -0.37 -1.68 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 24 C -0.10 -1.24 9.67 -39.58 -0.38 -1.62 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.37 7.90 5.58 -39.30 -0.22 7.68 16 32 H 0.40 3.76 9.10 45.56 0.41 4.18 16 33 H 0.13 1.95 7.24 -52.49 -0.38 1.57 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 LS Contribution 312.68 15.07 4.71 4.71 Total: -1.00 -32.78 312.68 -7.69 -40.48 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.11 Total: 8.43 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.67 Total: -14.02 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.19 Total: -39.32 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.79 Total: -17.81 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.78 -7.69 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695718672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.372 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds