Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.46970 * 2 1 4 4 C 1.52998 * 109.47196 * 239.99679 * 2 1 3 5 5 C 1.50697 * 109.47262 * 174.99808 * 4 2 1 6 6 H 1.08000 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00305 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99645 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47276 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47289 * 119.99831 * 9 7 5 12 12 H 1.48504 * 109.47358 * 239.99990 * 9 7 5 13 13 N 1.46907 * 109.46921 * 119.99851 * 2 1 3 14 14 C 1.46902 * 110.99670 * 274.99973 * 13 2 1 15 15 H 1.09000 * 109.46894 * 35.00466 * 14 13 2 16 16 C 1.50698 * 109.46927 * 274.99990 * 14 13 2 17 17 O 1.20824 * 120.00091 * 0.02562 * 16 14 13 18 18 O 1.34231 * 119.99710 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.46577 * 155.00233 * 14 13 2 20 20 C 1.38235 * 119.99800 * 39.72761 * 19 14 13 21 21 C 1.38240 * 119.99391 * 179.78556 * 20 19 14 22 22 C 1.38238 * 120.00239 * 0.44187 * 21 20 19 23 23 C 1.38233 * 119.99586 * 359.80942 * 22 21 20 24 24 C 1.38232 * 119.99662 * 219.99920 * 19 14 13 25 25 H 1.08995 * 109.47198 * 60.00243 * 1 2 3 26 26 H 1.09005 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47301 * 299.99833 * 1 2 3 28 28 H 1.08998 * 109.47282 * 295.00261 * 4 2 1 29 29 H 1.09004 * 109.47058 * 54.99906 * 4 2 1 30 30 H 0.97006 * 120.00024 * 180.02562 * 8 7 5 31 31 H 1.00892 * 110.99402 * 151.05001 * 13 2 1 32 32 H 0.96696 * 116.99892 * 180.02562 * 18 16 14 33 33 H 1.07997 * 120.00401 * 359.97438 * 20 19 14 34 34 H 1.07995 * 119.99874 * 180.27390 * 21 20 19 35 35 H 1.08001 * 119.99766 * 179.83529 * 22 21 20 36 36 H 1.08004 * 119.99658 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00225 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1927 -2.3582 8 7 3.5763 -1.8362 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.5839 -0.2929 -1.2649 11 1 6.6855 -2.4226 -2.4195 12 1 6.4871 -0.3649 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.0825 0.2227 2.3469 15 1 1.2576 0.9330 2.2906 16 6 3.3911 0.9695 2.3227 17 8 4.1894 0.7612 1.4400 18 8 3.6699 1.8662 3.2819 19 6 1.9786 -0.5676 3.6259 20 6 2.6283 -1.7822 3.7426 21 6 2.5366 -2.5049 4.9174 22 6 1.7878 -2.0174 5.9722 23 6 1.1339 -0.8053 5.8536 24 6 1.2290 -0.0805 4.6803 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1369 30 1 4.0607 -2.2430 -4.0359 31 1 2.9173 -1.1204 1.0288 32 1 4.5215 2.3205 3.2240 33 1 3.2100 -2.1650 2.9171 34 1 3.0477 -3.4517 5.0102 35 1 1.7140 -2.5834 6.8891 36 1 0.5492 -0.4242 6.6778 37 1 0.7182 0.8665 4.5877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695718672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = -94.857503 kcal Electronic energy + Delta-G solvation = -20061.460114 eV Core-core repulsion = 16995.266062 eV Total energy + Delta-G solvation = -3066.194053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68609 -39.86339 -38.20703 -36.92725 -35.05736 -33.62450 -31.75190 -30.56905 -29.26326 -27.37109 -25.03802 -23.50679 -23.41298 -21.55414 -21.09615 -19.10972 -18.57971 -18.01397 -17.83679 -16.80118 -16.55480 -16.42914 -15.82907 -15.58090 -15.10451 -14.78662 -14.18156 -14.15201 -13.78814 -13.60826 -13.43187 -13.21989 -13.16152 -12.66045 -12.62323 -12.56903 -12.43845 -12.30139 -12.06484 -11.82458 -11.63061 -11.13304 -11.02140 -10.56364 -9.74693 -9.64460 -9.53126 -8.17138 -6.23119 0.42285 0.58682 1.18774 1.33210 1.34762 1.49853 2.12137 2.41402 2.89462 3.13756 3.32414 3.72429 3.92165 4.21380 4.25098 4.28609 4.34333 4.40447 4.55694 4.67294 4.72199 4.80004 4.96896 5.09526 5.18786 5.22767 5.34060 5.42271 5.48686 5.61625 5.67815 5.69356 5.73484 5.89966 6.13727 6.20038 6.28781 6.35740 6.89676 7.07558 7.45432 8.95104 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005905 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.667775 B = 4740.286287 C = 4950.568967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.094 3.906 3 H 0.024 0.976 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.647 5.647 14 C 0.138 3.862 15 H 0.135 0.865 16 C 0.448 3.552 17 O -0.533 6.533 18 O -0.506 6.506 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.104 4.104 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H -0.001 1.001 29 H -0.002 1.002 30 H 0.260 0.740 31 H 0.351 0.649 32 H 0.419 0.581 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 4.572 20.395 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.016 4.016 3 H 0.042 0.958 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.280 5.280 14 C 0.025 3.975 15 H 0.153 0.847 16 C 0.289 3.711 17 O -0.422 6.422 18 O -0.318 6.318 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.122 4.122 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.069 0.931 31 H 0.173 0.827 32 H 0.280 0.720 33 H 0.119 0.881 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.743 3.976 20.170 21.345 hybrid contribution 2.590 0.618 -1.274 2.951 sum -3.154 4.594 18.896 19.700 Atomic orbital electron populations 1.21756 0.93409 1.01978 1.01515 1.21533 0.95492 0.94785 0.89761 0.95834 1.19140 0.94994 0.94771 0.92120 1.22002 0.93518 1.33109 1.08360 0.90460 1.25790 1.02546 0.95339 0.95692 1.70104 1.36960 1.37484 1.12840 0.85606 0.81160 0.77807 0.77710 1.19867 1.20373 1.20505 1.61094 1.34005 1.28808 1.04129 1.20461 0.91779 0.93182 0.92068 0.84733 1.25201 0.90492 0.77418 0.78013 1.90832 1.50108 1.64271 1.36981 1.84520 1.44805 1.52241 1.50220 1.19319 0.99964 0.95419 0.93360 1.21054 0.99536 0.95019 0.97946 1.21344 1.00000 1.00404 0.93130 1.21515 0.96416 0.96566 0.99109 1.21453 0.99715 0.94881 0.97841 1.21220 0.97857 1.00562 0.92541 0.92512 0.92810 0.91192 0.98223 0.98392 0.93117 0.82660 0.71991 0.88063 0.84871 0.83430 0.82951 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.40 71.98 0.68 -3.67 16 2 C 0.09 3.92 2.23 44.92 0.10 4.02 16 3 H 0.02 1.02 7.63 -2.39 -0.02 1.01 16 4 C 0.03 1.45 4.57 29.85 0.14 1.59 16 5 C -0.53 -31.10 8.12 25.60 0.21 -30.89 16 6 H 0.08 4.52 5.06 -2.91 -0.01 4.50 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 9 Si 0.95 47.46 29.54 68.60 2.03 49.48 16 10 H -0.27 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.65 -24.98 5.36 -477.16 -2.56 -27.53 16 14 C 0.14 4.25 2.52 43.42 0.11 4.36 16 15 H 0.14 3.56 6.97 -2.39 -0.02 3.54 16 16 C 0.45 14.84 7.31 71.24 0.52 15.36 16 17 O -0.53 -22.85 14.12 21.97 0.31 -22.54 16 18 O -0.51 -12.40 13.34 -51.42 -0.69 -13.09 16 19 C -0.08 -2.18 4.88 -19.86 -0.10 -2.27 16 20 C -0.12 -3.38 9.32 22.27 0.21 -3.17 16 21 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 22 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.10 -2.18 9.67 22.27 0.22 -1.96 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.07 1.90 7.43 -2.39 -0.02 1.88 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.35 15.80 5.58 -89.70 -0.50 15.30 16 32 H 0.42 7.09 9.10 -74.06 -0.67 6.41 16 33 H 0.10 3.34 7.24 -2.91 -0.02 3.32 16 34 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.14 2.34 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -72.95 312.68 2.51 -70.45 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.08 Total: 23.79 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.21 Total: -22.58 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.27 Total: -85.51 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.38 Total: -35.63 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -72.95 2.51 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695718672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.412 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds