Wall clock time and date at job start Mon Mar 30 2020 06:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47184 * 2 1 4 4 C 1.53005 * 109.46682 * 119.99863 * 2 1 3 5 5 C 1.50700 * 109.46703 * 184.99995 * 4 2 1 6 6 H 1.07996 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00077 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99461 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00182 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47092 * 90.00277 * 9 7 5 11 11 H 1.48500 * 109.46888 * 209.99910 * 9 7 5 12 12 H 1.48493 * 109.47070 * 330.00120 * 9 7 5 13 13 N 1.46897 * 109.46970 * 239.99317 * 2 1 3 14 14 C 1.46906 * 110.99724 * 85.00714 * 13 2 1 15 15 C 1.50699 * 109.46900 * 179.97438 * 14 13 2 16 16 C 1.38247 * 119.92596 * 269.97154 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.79586 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.93007 * 89.99943 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46967 * 300.00270 * 1 2 3 26 26 H 1.09007 * 109.46927 * 60.00450 * 1 2 3 27 27 H 1.09000 * 109.47104 * 304.99865 * 4 2 1 28 28 H 1.08993 * 109.47279 * 65.00047 * 4 2 1 29 29 H 0.97000 * 119.99523 * 180.02562 * 8 7 5 30 30 H 1.00898 * 111.00620 * 321.04895 * 13 2 1 31 31 H 1.08989 * 109.47193 * 59.99570 * 14 13 2 32 32 H 1.09001 * 109.46600 * 299.99098 * 14 13 2 33 33 H 1.07994 * 119.93290 * 0.04934 * 16 15 14 34 34 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 35 35 H 1.08003 * 119.98943 * 359.97438 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5398 7 6 4.2303 -1.1926 2.3585 8 7 3.5761 -1.8360 3.3007 9 14 6.0920 -1.0614 2.4368 10 1 6.4708 0.1614 3.1894 11 1 6.6439 -2.2565 3.1241 12 1 6.6412 -0.9849 1.0593 13 7 2.0197 -0.6926 -1.1993 14 6 2.0826 0.2225 -2.3469 15 6 2.5886 -0.5218 -3.5556 16 6 3.9453 -0.5722 -3.8165 17 6 4.4147 -1.2572 -4.9217 18 6 3.5248 -1.8878 -5.7761 19 6 2.1581 -1.8369 -5.5133 20 6 1.6952 -1.1520 -4.4014 21 8 1.5004 -2.5312 -6.4872 22 6 2.4416 -2.6611 -7.5690 23 8 3.7234 -2.6140 -6.9147 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 4.0604 -2.2421 4.0365 30 1 1.4496 -1.4980 -1.4099 31 1 2.7589 1.0459 -2.1182 32 1 1.0871 0.6161 -2.5526 33 1 4.6403 -0.0789 -3.1532 34 1 5.4754 -1.2996 -5.1201 35 1 0.6358 -1.1110 -4.1953 36 1 2.3379 -1.8316 -8.2686 37 1 2.3078 -3.6141 -8.0809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:42 Heat of formation + Delta-G solvation = -41.712152 kcal Electronic energy + Delta-G solvation = -19275.435803 eV Core-core repulsion = 16211.546306 eV Total energy + Delta-G solvation = -3063.889497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18314 -38.42160 -36.40609 -36.30938 -32.89155 -31.61803 -30.41426 -28.92887 -27.22519 -26.08387 -24.52318 -22.98188 -22.86624 -21.52935 -19.75076 -17.94192 -17.56980 -17.39333 -16.27776 -16.10252 -14.91814 -14.69509 -14.52045 -14.43197 -14.15556 -13.87853 -13.23609 -13.06329 -13.01066 -12.89067 -12.43850 -11.98112 -11.78015 -11.66425 -11.36407 -11.13112 -10.90629 -10.80803 -10.53196 -10.40551 -10.03553 -9.27252 -8.96014 -8.83567 -8.22544 -8.02963 -7.56289 -5.84547 -3.81978 1.15961 1.25331 2.69606 3.35513 3.41218 3.47628 3.51913 3.58754 4.47655 4.49988 4.59584 4.69457 4.87876 5.01842 5.13919 5.14598 5.32268 5.47185 5.53253 5.68733 5.72308 5.85666 5.96464 6.02812 6.06916 6.11705 6.26211 6.42514 6.45485 6.62308 6.66790 7.03096 7.10867 7.55810 7.70726 8.02481 8.07710 8.18717 8.63149 9.23075 9.79131 11.27707 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.004585 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.399182 B = 6105.286063 C = 6964.054932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.658 5.658 14 C 0.100 3.900 15 C -0.060 4.060 16 C -0.083 4.083 17 C -0.099 4.099 18 C 0.022 3.978 19 C 0.026 3.974 20 C -0.096 4.096 21 O -0.312 6.312 22 C 0.214 3.786 23 O -0.312 6.312 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.257 0.743 30 H 0.333 0.667 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 2.395 -19.671 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.288 5.288 14 C -0.029 4.029 15 C -0.061 4.061 16 C -0.101 4.101 17 C -0.118 4.118 18 C -0.022 4.022 19 C -0.018 4.018 20 C -0.115 4.115 21 O -0.228 6.228 22 C 0.102 3.898 23 O -0.229 6.229 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.011 2.187 -19.450 19.802 hybrid contribution 0.015 -0.142 -0.365 0.392 sum -2.996 2.045 -19.814 20.144 Atomic orbital electron populations 1.22568 0.99507 1.01262 1.00651 1.21829 0.89908 0.98219 0.92084 0.91603 1.19116 0.96267 0.95432 0.89642 1.21142 0.91886 1.32804 1.06738 0.92336 1.25008 0.97951 0.95936 0.96087 1.69968 1.35173 1.37092 1.12341 0.86645 0.86501 0.77167 0.77947 1.21080 1.21593 1.19926 1.60615 1.58024 1.08325 1.01863 1.20898 0.98867 0.95083 0.88088 1.19679 0.92970 0.98020 0.95395 1.20923 0.95395 0.98473 0.95341 1.20106 0.99121 0.98113 0.94473 1.19790 0.93535 0.97857 0.91046 1.19698 0.89560 0.98181 0.94367 1.19944 1.00635 0.97976 0.92934 1.87340 1.38126 1.71318 1.26047 1.25551 0.71902 1.03815 0.88551 1.87340 1.32160 1.69413 1.33962 0.93005 0.92411 0.94389 0.96435 0.96493 0.93376 0.84932 0.89952 0.95128 0.83937 0.84839 0.85152 0.90238 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.16 37.16 0.34 -2.60 16 2 C 0.09 1.73 2.53 -67.71 -0.17 1.56 16 3 H 0.07 1.29 7.80 -51.93 -0.41 0.89 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.49 -13.61 8.84 -34.44 -0.30 -13.91 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.66 -11.87 5.95 -107.99 -0.64 -12.51 16 14 C 0.10 1.45 5.61 -4.97 -0.03 1.42 16 15 C -0.06 -0.83 5.39 -104.62 -0.56 -1.40 16 16 C -0.08 -1.13 9.69 -39.58 -0.38 -1.51 16 17 C -0.10 -1.30 10.06 -39.46 -0.40 -1.70 16 18 C 0.02 0.30 7.15 -39.08 -0.28 0.02 16 19 C 0.03 0.36 7.15 -39.08 -0.28 0.08 16 20 C -0.10 -1.29 9.71 -39.47 -0.38 -1.67 16 21 O -0.31 -4.03 11.40 -45.68 -0.52 -4.55 16 22 C 0.21 2.04 8.89 101.05 0.90 2.93 16 23 O -0.31 -4.01 11.40 -45.70 -0.52 -4.53 16 24 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.53 7.45 -51.92 -0.39 0.14 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.33 5.78 8.46 -39.29 -0.33 5.45 16 31 H 0.08 1.19 8.00 -51.94 -0.42 0.78 16 32 H 0.03 0.40 7.38 -51.93 -0.38 0.02 16 33 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -31.95 315.35 -8.26 -40.21 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.27 Total: 1.09 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.78 Total: -14.74 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.09 Total: -39.28 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.04 Total: -9.08 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.95 -8.26 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.498 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds