Wall clock time and date at job start Mon Mar 30 2020 06:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47184 * 2 1 4 4 C 1.53005 * 109.46682 * 119.99863 * 2 1 3 5 5 C 1.50700 * 109.46703 * 184.99995 * 4 2 1 6 6 H 1.07996 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00077 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99461 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00182 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47092 * 90.00277 * 9 7 5 11 11 H 1.48500 * 109.46888 * 209.99910 * 9 7 5 12 12 H 1.48493 * 109.47070 * 330.00120 * 9 7 5 13 13 N 1.46897 * 109.46970 * 239.99317 * 2 1 3 14 14 C 1.46906 * 110.99724 * 85.00714 * 13 2 1 15 15 C 1.50699 * 109.46900 * 179.97438 * 14 13 2 16 16 C 1.38247 * 119.92596 * 269.97154 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.79586 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.93007 * 89.99943 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46967 * 300.00270 * 1 2 3 26 26 H 1.09007 * 109.46927 * 60.00450 * 1 2 3 27 27 H 1.09000 * 109.47104 * 304.99865 * 4 2 1 28 28 H 1.08993 * 109.47279 * 65.00047 * 4 2 1 29 29 H 0.97000 * 119.99523 * 180.02562 * 8 7 5 30 30 H 1.00898 * 111.00620 * 321.04895 * 13 2 1 31 31 H 1.08989 * 109.47193 * 59.99570 * 14 13 2 32 32 H 1.09001 * 109.46600 * 299.99098 * 14 13 2 33 33 H 1.07994 * 119.93290 * 0.04934 * 16 15 14 34 34 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 35 35 H 1.08003 * 119.98943 * 359.97438 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5398 7 6 4.2303 -1.1926 2.3585 8 7 3.5761 -1.8360 3.3007 9 14 6.0920 -1.0614 2.4368 10 1 6.4708 0.1614 3.1894 11 1 6.6439 -2.2565 3.1241 12 1 6.6412 -0.9849 1.0593 13 7 2.0197 -0.6926 -1.1993 14 6 2.0826 0.2225 -2.3469 15 6 2.5886 -0.5218 -3.5556 16 6 3.9453 -0.5722 -3.8165 17 6 4.4147 -1.2572 -4.9217 18 6 3.5248 -1.8878 -5.7761 19 6 2.1581 -1.8369 -5.5133 20 6 1.6952 -1.1520 -4.4014 21 8 1.5004 -2.5312 -6.4872 22 6 2.4416 -2.6611 -7.5690 23 8 3.7234 -2.6140 -6.9147 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 4.0604 -2.2421 4.0365 30 1 1.4496 -1.4980 -1.4099 31 1 2.7589 1.0459 -2.1182 32 1 1.0871 0.6161 -2.5526 33 1 4.6403 -0.0789 -3.1532 34 1 5.4754 -1.2996 -5.1201 35 1 0.6358 -1.1110 -4.1953 36 1 2.3379 -1.8316 -8.2686 37 1 2.3078 -3.6141 -8.0809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:42 Heat of formation + Delta-G solvation = -62.529596 kcal Electronic energy + Delta-G solvation = -19276.338515 eV Core-core repulsion = 16211.546306 eV Total energy + Delta-G solvation = -3064.792209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.10705 -39.50867 -37.80034 -37.26968 -34.82891 -33.07307 -31.42767 -30.25253 -29.00949 -26.96062 -25.71426 -24.80209 -23.94024 -22.60069 -21.37528 -18.88949 -18.59464 -18.32408 -18.25429 -17.14975 -16.50564 -16.27609 -15.65028 -15.60718 -15.44009 -14.84100 -14.51093 -14.42076 -14.09725 -13.97402 -13.82342 -13.48653 -13.21627 -13.15568 -13.00620 -12.60559 -12.35890 -12.29489 -12.04618 -11.82114 -11.70725 -11.10185 -11.04401 -10.44387 -9.85381 -9.07396 -8.90517 -8.05281 -6.09609 0.12297 0.24276 1.44608 1.46165 1.56997 1.80222 2.51364 2.52252 2.55320 3.28261 3.49352 3.61522 3.82160 3.89833 4.06838 4.11137 4.27097 4.29954 4.31922 4.47358 4.54266 4.61636 4.69053 4.80624 5.01875 5.05270 5.10062 5.24593 5.28910 5.32309 5.45881 5.55594 5.61541 5.72570 5.95091 6.14149 6.37240 6.52333 6.73521 7.05246 7.56018 9.07088 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.004585 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.399182 B = 6105.286063 C = 6964.054932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H 0.066 0.934 4 C 0.036 3.964 5 C -0.495 4.495 6 H 0.061 0.939 7 C -0.009 4.009 8 N -0.944 5.944 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.677 5.677 14 C 0.107 3.893 15 C -0.068 4.068 16 C -0.091 4.091 17 C -0.104 4.104 18 C 0.012 3.988 19 C 0.014 3.986 20 C -0.098 4.098 21 O -0.326 6.326 22 C 0.204 3.796 23 O -0.326 6.326 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.068 0.932 27 H -0.008 1.008 28 H -0.013 1.013 29 H 0.257 0.743 30 H 0.335 0.665 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.105 0.895 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 2.969 -21.553 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 H 0.085 0.915 4 C -0.001 4.001 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.204 4.204 8 N -0.587 5.587 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.189 1.189 13 N -0.308 5.308 14 C -0.022 4.022 15 C -0.068 4.068 16 C -0.109 4.109 17 C -0.122 4.122 18 C -0.032 4.032 19 C -0.030 4.030 20 C -0.117 4.117 21 O -0.243 6.243 22 C 0.094 3.906 23 O -0.243 6.243 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.010 0.990 28 H 0.006 0.994 29 H 0.066 0.934 30 H 0.153 0.847 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.717 2.775 -21.361 21.711 hybrid contribution -0.102 -0.355 0.132 0.392 sum -2.818 2.419 -21.229 21.552 Atomic orbital electron populations 1.22428 0.96807 1.01657 1.02091 1.21476 0.92020 0.97124 0.90354 0.91547 1.19014 0.95204 0.94101 0.91827 1.21534 0.93386 1.32017 1.06424 0.92063 1.25883 1.02875 0.95797 0.95894 1.70108 1.37066 1.38359 1.13118 0.85582 0.80690 0.77218 0.78342 1.20115 1.21673 1.18858 1.60429 1.58448 1.09240 1.02675 1.20856 1.00079 0.94341 0.86900 1.19638 0.93216 0.98587 0.95400 1.21056 0.95522 0.98695 0.95674 1.20305 1.00038 0.97754 0.94143 1.20005 0.93755 0.97949 0.91515 1.19879 0.89863 0.98428 0.94804 1.20077 1.01278 0.97631 0.92692 1.87311 1.39133 1.71163 1.26648 1.26106 0.70029 1.06754 0.87718 1.87312 1.33920 1.69236 1.33792 0.93166 0.92548 0.91309 0.99006 0.99435 0.93445 0.84686 0.90010 0.92999 0.83656 0.83189 0.83844 0.87733 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.29 9.16 71.98 0.66 -4.63 16 2 C 0.10 3.83 2.53 44.92 0.11 3.94 16 3 H 0.07 2.53 7.80 -2.39 -0.02 2.51 16 4 C 0.04 1.86 4.65 29.85 0.14 2.00 16 5 C -0.50 -27.89 8.84 25.60 0.23 -27.66 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 7 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 9 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.68 -23.75 5.95 -495.58 -2.95 -26.70 16 14 C 0.11 2.90 5.61 85.56 0.48 3.38 16 15 C -0.07 -1.78 5.39 -19.86 -0.11 -1.89 16 16 C -0.09 -2.37 9.69 22.27 0.22 -2.15 16 17 C -0.10 -2.59 10.06 22.35 0.22 -2.36 16 18 C 0.01 0.32 7.15 22.59 0.16 0.48 16 19 C 0.01 0.38 7.15 22.59 0.16 0.54 16 20 C -0.10 -2.47 9.71 22.34 0.22 -2.26 16 21 O -0.33 -7.86 11.40 -76.01 -0.87 -8.72 16 22 C 0.20 3.42 8.89 113.37 1.01 4.43 16 23 O -0.33 -7.82 11.40 -76.10 -0.87 -8.69 16 24 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.72 7.45 -2.38 -0.02 1.70 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.34 11.37 8.46 -89.70 -0.76 10.61 16 31 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 32 H 0.05 1.21 7.38 -2.39 -0.02 1.19 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -68.91 315.35 1.90 -67.01 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.31 Total: 14.21 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.96 Total: -26.26 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.66 Total: -84.98 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.73 Total: -17.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.91 1.90 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.479 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds