Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47074 * 2 1 4 4 C 1.52995 * 109.46923 * 239.99629 * 2 1 3 5 5 C 1.50702 * 109.46966 * 174.99938 * 4 2 1 6 6 H 1.08000 * 119.99822 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00189 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99928 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47295 * 89.99154 * 9 7 5 11 11 H 1.48498 * 109.47315 * 209.99855 * 9 7 5 12 12 H 1.48500 * 109.46716 * 329.99633 * 9 7 5 13 13 N 1.46899 * 109.46863 * 119.99996 * 2 1 3 14 14 C 1.46907 * 110.99689 * 274.99958 * 13 2 1 15 15 C 1.50699 * 109.46871 * 180.02562 * 14 13 2 16 16 C 1.38250 * 119.92987 * 270.01776 * 15 14 13 17 17 C 1.38231 * 120.14882 * 179.75267 * 16 15 14 18 18 C 1.38552 * 120.02572 * 0.47231 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.53273 * 18 17 16 20 20 C 1.38232 * 119.92999 * 90.00264 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.83620 * 18 17 16 24 24 H 1.09003 * 109.47179 * 60.00452 * 1 2 3 25 25 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47735 * 300.00034 * 1 2 3 27 27 H 1.09000 * 109.47548 * 294.99670 * 4 2 1 28 28 H 1.08998 * 109.47411 * 55.00013 * 4 2 1 29 29 H 0.97002 * 119.99430 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00732 * 38.95530 * 13 2 1 31 31 H 1.08988 * 109.47188 * 60.00278 * 14 13 2 32 32 H 1.09004 * 109.46559 * 300.00030 * 14 13 2 33 33 H 1.08001 * 119.92506 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99380 * 180.33371 * 17 16 15 35 35 H 1.08003 * 119.98952 * 0.02562 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1936 -2.3577 8 7 5.5411 -1.1004 -2.4133 9 14 3.3016 -2.1089 -3.6952 10 1 2.9407 -1.1640 -4.7826 11 1 4.1600 -3.1897 -4.2431 12 1 2.0655 -2.7005 -3.1232 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2227 2.3469 15 6 2.5883 -0.5214 3.5558 16 6 1.6948 -1.1520 4.4015 17 6 2.1544 -1.8401 5.5088 18 6 3.5123 -1.8911 5.7791 19 6 4.4124 -1.2558 4.9272 20 6 3.9449 -0.5722 3.8165 21 8 5.6768 -1.4544 5.4017 22 6 5.5128 -1.8691 6.7707 23 8 4.2127 -2.4877 6.7874 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2619 -2.1369 29 1 6.0255 -1.5078 -3.1484 30 1 1.4496 -1.4979 1.4101 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0463 2.1181 33 1 0.6357 -1.1107 4.1941 34 1 1.4546 -2.3364 6.1648 35 1 4.6408 -0.0785 3.1542 36 1 5.5354 -1.0070 7.4374 37 1 6.2830 -2.5890 7.0478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = -37.286692 kcal Electronic energy + Delta-G solvation = -19319.167443 eV Core-core repulsion = 16255.469848 eV Total energy + Delta-G solvation = -3063.697595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11715 -38.42081 -36.47925 -36.25473 -32.84192 -31.68464 -30.40247 -29.10337 -27.69736 -26.02947 -24.55452 -22.91208 -22.59626 -21.50174 -19.75317 -17.90464 -17.49460 -17.30846 -16.54353 -16.20221 -15.17920 -14.72501 -14.42268 -14.28141 -13.82024 -13.74227 -13.57985 -13.04657 -12.94491 -12.91004 -12.39090 -12.25786 -11.97052 -11.79566 -11.63409 -11.30050 -10.84572 -10.79235 -10.64615 -10.27714 -9.70721 -9.56097 -9.00807 -8.75533 -8.38273 -8.02781 -7.61604 -5.86687 -3.80350 1.16879 1.30826 2.76271 3.38774 3.43131 3.46782 3.49682 3.60573 4.53896 4.57841 4.58507 4.73298 4.84895 5.06072 5.10431 5.17999 5.26818 5.48302 5.53234 5.59492 5.68366 5.77129 5.89016 5.97729 6.07315 6.17522 6.29338 6.33044 6.41964 6.47980 6.67480 6.81256 7.15774 7.17450 7.33547 7.78812 7.93463 8.08098 8.76173 9.24531 9.76496 11.27493 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.004707 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.412037 B = 5946.699153 C = 6827.257283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.657 5.657 14 C 0.101 3.899 15 C -0.060 4.060 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.021 3.979 19 C 0.031 3.969 20 C -0.072 4.072 21 O -0.307 6.307 22 C 0.213 3.787 23 O -0.314 6.314 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.259 0.741 30 H 0.333 0.667 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 0.996 17.631 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.011 4.011 3 H 0.090 0.910 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.287 5.287 14 C -0.028 4.028 15 C -0.060 4.060 16 C -0.127 4.127 17 C -0.121 4.121 18 C -0.023 4.023 19 C -0.013 4.013 20 C -0.091 4.091 21 O -0.224 6.224 22 C 0.101 3.899 23 O -0.230 6.230 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.464 0.884 17.406 18.588 hybrid contribution -1.054 -0.594 -0.381 1.268 sum -7.518 0.290 17.025 18.613 Atomic orbital electron populations 1.22603 0.99390 1.01284 1.00974 1.21582 0.89746 0.98365 0.91439 0.91030 1.19606 0.97844 0.95432 0.91319 1.21033 0.89510 1.33702 1.08417 0.90556 1.25018 0.94680 0.96314 0.97922 1.69919 1.06441 1.46282 1.32333 0.86872 0.80215 0.80016 0.82623 1.20683 1.21695 1.19302 1.60511 1.57947 1.08359 1.01919 1.20879 0.98841 0.95087 0.87990 1.19637 0.91896 0.98410 0.96102 1.20800 0.99886 0.98088 0.93899 1.19947 0.90545 1.02160 0.99450 1.19789 0.93795 0.98013 0.90691 1.19797 0.82448 1.01077 0.97990 1.20072 0.95603 0.98579 0.94831 1.87395 1.24335 1.84238 1.26395 1.25570 0.84666 0.96618 0.83021 1.87322 1.24999 1.59345 1.51336 0.92405 0.93010 0.93952 0.96588 0.96956 0.93130 0.84960 0.94876 0.89983 0.84879 0.85091 0.84109 0.90204 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.16 37.16 0.34 -2.38 16 2 C 0.10 1.83 2.53 -67.72 -0.17 1.66 16 3 H 0.07 1.37 7.80 -51.93 -0.40 0.97 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.89 9.39 -34.44 -0.32 -14.21 16 6 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -28.70 13.96 55.43 0.77 -27.92 16 9 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 N -0.66 -11.65 5.95 -107.99 -0.64 -12.30 16 14 C 0.10 1.46 5.61 -4.97 -0.03 1.44 16 15 C -0.06 -0.84 5.39 -104.62 -0.56 -1.40 16 16 C -0.11 -1.29 9.69 -39.58 -0.38 -1.68 16 17 C -0.10 -1.25 10.06 -39.47 -0.40 -1.64 16 18 C 0.02 0.30 7.15 -39.08 -0.28 0.02 16 19 C 0.03 0.48 7.15 -39.08 -0.28 0.20 16 20 C -0.07 -1.12 9.71 -39.47 -0.38 -1.50 16 21 O -0.31 -4.53 11.40 -45.68 -0.52 -5.05 16 22 C 0.21 2.24 8.89 101.05 0.90 3.14 16 23 O -0.31 -4.13 11.40 -45.70 -0.52 -4.65 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.33 5.46 8.46 -39.29 -0.33 5.12 16 31 H 0.03 0.41 7.38 -51.94 -0.38 0.03 16 32 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -33.12 311.75 -7.89 -41.01 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.23 Total: 1.64 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.77 Total: -14.90 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.13 Total: -40.22 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.04 Total: -9.71 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.12 -7.89 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.727 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds