Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47074 * 2 1 4 4 C 1.52995 * 109.46923 * 239.99629 * 2 1 3 5 5 C 1.50702 * 109.46966 * 174.99938 * 4 2 1 6 6 H 1.08000 * 119.99822 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00189 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99928 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47295 * 89.99154 * 9 7 5 11 11 H 1.48498 * 109.47315 * 209.99855 * 9 7 5 12 12 H 1.48500 * 109.46716 * 329.99633 * 9 7 5 13 13 N 1.46899 * 109.46863 * 119.99996 * 2 1 3 14 14 C 1.46907 * 110.99689 * 274.99958 * 13 2 1 15 15 C 1.50699 * 109.46871 * 180.02562 * 14 13 2 16 16 C 1.38250 * 119.92987 * 270.01776 * 15 14 13 17 17 C 1.38231 * 120.14882 * 179.75267 * 16 15 14 18 18 C 1.38552 * 120.02572 * 0.47231 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.53273 * 18 17 16 20 20 C 1.38232 * 119.92999 * 90.00264 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.83620 * 18 17 16 24 24 H 1.09003 * 109.47179 * 60.00452 * 1 2 3 25 25 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47735 * 300.00034 * 1 2 3 27 27 H 1.09000 * 109.47548 * 294.99670 * 4 2 1 28 28 H 1.08998 * 109.47411 * 55.00013 * 4 2 1 29 29 H 0.97002 * 119.99430 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00732 * 38.95530 * 13 2 1 31 31 H 1.08988 * 109.47188 * 60.00278 * 14 13 2 32 32 H 1.09004 * 109.46559 * 300.00030 * 14 13 2 33 33 H 1.08001 * 119.92506 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99380 * 180.33371 * 17 16 15 35 35 H 1.08003 * 119.98952 * 0.02562 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1936 -2.3577 8 7 5.5411 -1.1004 -2.4133 9 14 3.3016 -2.1089 -3.6952 10 1 2.9407 -1.1640 -4.7826 11 1 4.1600 -3.1897 -4.2431 12 1 2.0655 -2.7005 -3.1232 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2227 2.3469 15 6 2.5883 -0.5214 3.5558 16 6 1.6948 -1.1520 4.4015 17 6 2.1544 -1.8401 5.5088 18 6 3.5123 -1.8911 5.7791 19 6 4.4124 -1.2558 4.9272 20 6 3.9449 -0.5722 3.8165 21 8 5.6768 -1.4544 5.4017 22 6 5.5128 -1.8691 6.7707 23 8 4.2127 -2.4877 6.7874 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7516 -1.7716 -1.2055 28 1 1.6053 -0.2619 -2.1369 29 1 6.0255 -1.5078 -3.1484 30 1 1.4496 -1.4979 1.4101 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0463 2.1181 33 1 0.6357 -1.1107 4.1941 34 1 1.4546 -2.3364 6.1648 35 1 4.6408 -0.0785 3.1542 36 1 5.5354 -1.0070 7.4374 37 1 6.2830 -2.5890 7.0478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = -60.501975 kcal Electronic energy + Delta-G solvation = -19320.174133 eV Core-core repulsion = 16255.469848 eV Total energy + Delta-G solvation = -3064.704285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.11447 -39.52975 -37.84137 -37.28041 -34.78678 -33.20268 -31.47957 -30.50655 -29.27183 -26.98263 -25.71055 -24.45680 -23.94716 -22.61713 -21.35282 -18.88991 -18.74715 -18.51067 -18.31464 -17.23670 -16.51737 -16.26083 -15.83526 -15.44671 -15.15458 -14.84209 -14.81186 -14.54839 -14.05889 -13.99770 -13.94375 -13.69939 -13.37778 -13.20730 -12.94699 -12.67294 -12.37986 -12.15591 -11.87844 -11.72317 -11.58727 -11.37589 -11.09518 -10.65142 -9.82866 -9.10533 -8.88420 -8.14859 -6.13403 0.11266 0.24964 1.38520 1.41417 1.52326 1.80766 2.44901 2.51231 2.56130 3.19833 3.49723 3.59089 3.80670 3.90873 4.05367 4.08785 4.25086 4.26151 4.31074 4.45529 4.52562 4.63214 4.69397 4.79068 5.02341 5.04434 5.11310 5.20962 5.25564 5.26841 5.34571 5.43717 5.57310 5.61778 5.79941 6.13797 6.36390 6.53629 6.79208 6.95656 7.47259 9.02959 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.004707 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.412037 B = 5946.699153 C = 6827.257283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 H 0.057 0.943 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.031 0.969 7 C -0.009 4.009 8 N -0.963 5.963 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.247 1.247 13 N -0.685 5.685 14 C 0.109 3.891 15 C -0.068 4.068 16 C -0.093 4.093 17 C -0.096 4.096 18 C 0.014 3.986 19 C 0.008 3.992 20 C -0.099 4.099 21 O -0.335 6.335 22 C 0.205 3.795 23 O -0.322 6.322 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.259 0.741 30 H 0.341 0.659 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 0.114 18.527 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 H 0.075 0.925 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.050 0.950 7 C -0.203 4.203 8 N -0.606 5.606 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.170 1.170 13 N -0.317 5.317 14 C -0.020 4.020 15 C -0.069 4.069 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.031 4.031 19 C -0.036 4.036 20 C -0.118 4.118 21 O -0.252 6.252 22 C 0.094 3.906 23 O -0.238 6.238 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.188 0.812 34 H 0.181 0.819 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.911 0.012 18.326 20.835 hybrid contribution 0.114 -0.275 -0.534 0.612 sum -9.797 -0.263 17.792 20.313 Atomic orbital electron populations 1.22434 0.95497 1.02397 1.02611 1.21353 0.92708 0.96750 0.89934 0.92463 1.19596 0.94170 0.96122 0.94318 1.21356 0.92405 1.32134 1.06741 0.95050 1.26016 0.95525 0.97746 1.01032 1.70108 1.08623 1.48234 1.33628 0.85692 0.79235 0.78547 0.79258 1.19376 1.21956 1.17023 1.60316 1.58948 1.09574 1.02825 1.20797 1.00086 0.94032 0.87049 1.19664 0.91472 0.99171 0.96567 1.21150 1.01136 0.96177 0.92651 1.20392 0.90179 1.01317 0.99575 1.20094 0.94499 0.97887 0.90604 1.19959 0.83191 1.01960 0.98522 1.20079 0.96400 0.99982 0.95355 1.87344 1.24663 1.84612 1.28623 1.26096 0.84493 0.98462 0.81550 1.87290 1.25856 1.59725 1.50972 0.91924 0.92104 0.91215 0.96558 0.96181 0.93224 0.83963 0.91466 0.92031 0.81237 0.81879 0.86775 0.87657 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 9.16 71.98 0.66 -3.77 16 2 C 0.10 3.69 2.53 44.91 0.11 3.81 16 3 H 0.06 2.20 7.80 -2.39 -0.02 2.18 16 4 C 0.00 -0.20 3.72 29.85 0.11 -0.08 16 5 C -0.49 -28.58 9.39 25.60 0.24 -28.34 16 6 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 7 C -0.01 -0.55 5.47 84.65 0.46 -0.09 16 8 N -0.96 -63.16 13.96 21.45 0.30 -62.86 16 9 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 13 N -0.69 -23.83 5.95 -495.58 -2.95 -26.78 16 14 C 0.11 3.07 5.61 85.56 0.48 3.55 16 15 C -0.07 -1.88 5.39 -19.86 -0.11 -1.98 16 16 C -0.09 -1.94 9.69 22.27 0.22 -1.73 16 17 C -0.10 -2.07 10.06 22.34 0.22 -1.85 16 18 C 0.01 0.37 7.15 22.59 0.16 0.53 16 19 C 0.01 0.24 7.15 22.59 0.16 0.40 16 20 C -0.10 -3.26 9.71 22.34 0.22 -3.04 16 21 O -0.34 -10.26 11.40 -76.01 -0.87 -11.12 16 22 C 0.20 4.13 8.89 113.37 1.01 5.14 16 23 O -0.32 -8.08 11.40 -76.10 -0.87 -8.94 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 26 H 0.07 1.45 7.45 -2.39 -0.02 1.43 16 27 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 28 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 29 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 30 H 0.34 10.52 8.46 -89.70 -0.76 9.76 16 31 H 0.07 1.45 7.38 -2.39 -0.02 1.43 16 32 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 33 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 36 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.16 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.48 311.75 1.70 -73.77 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.26 Total: 15.69 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.95 Total: -27.44 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -2.65 Total: -89.64 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.73 Total: -20.07 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -75.48 1.70 -73.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.271 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds