Wall clock time and date at job start Mon Mar 30 2020 06:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46500 * 109.47274 * 240.00496 * 2 1 3 14 14 C 1.39923 * 120.00257 * 84.99579 * 13 2 1 15 15 C 1.38852 * 120.02189 * 0.02562 * 14 13 2 16 16 C 1.38154 * 120.03331 * 180.02562 * 15 14 13 17 17 C 1.38695 * 120.16640 * 359.97065 * 16 15 14 18 18 C 1.38982 * 119.93600 * 359.94871 * 17 16 15 19 19 C 1.38669 * 119.89027 * 359.85773 * 18 17 16 20 20 O 1.36119 * 120.78141 * 180.21283 * 18 17 16 21 21 C 1.43165 * 116.71530 * 342.70048 * 20 18 17 22 22 C 1.53469 * 108.23519 * 46.28717 * 21 20 18 23 23 O 1.36230 * 119.31488 * 179.80650 * 17 16 15 24 24 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 26 26 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 28 28 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97002 * 119.99373 * 264.99828 * 13 2 1 31 31 H 1.07999 * 119.99089 * 0.04746 * 15 14 13 32 32 H 1.07997 * 119.92262 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.99299 * 180.18209 * 19 18 17 34 34 H 1.09003 * 109.71300 * 286.60313 * 21 20 18 35 35 H 1.09003 * 109.71320 * 165.97094 * 21 20 18 36 36 H 1.08997 * 109.71518 * 180.54435 * 22 21 20 37 37 H 1.08999 * 109.74381 * 59.93707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.4787 0.3828 2.5007 11 1 6.5856 -1.7455 3.6588 12 1 6.6882 -1.6765 1.2372 13 7 2.0183 -0.6905 -1.1962 14 6 2.1519 0.0076 -2.4015 15 6 1.8222 1.3549 -2.4642 16 6 1.9535 2.0443 -3.6543 17 6 2.4151 1.3940 -4.7891 18 6 2.7475 0.0459 -4.7291 19 6 2.6194 -0.6449 -3.5335 20 8 3.2062 -0.6082 -5.8312 21 6 2.9715 0.0195 -7.0963 22 6 3.3492 1.5020 -6.9743 23 8 2.5341 2.0896 -5.9544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.7517 -1.7715 1.2056 28 1 1.6054 -0.2617 2.1369 29 1 4.0601 -2.2360 4.0401 30 1 2.2490 -1.6317 -1.1526 31 1 1.4633 1.8645 -1.5822 32 1 1.6962 3.0921 -3.7011 33 1 2.8801 -1.6918 -3.4843 34 1 1.9182 -0.0709 -7.3618 35 1 3.5860 -0.4546 -7.8616 36 1 3.1702 2.0063 -7.9238 37 1 4.4008 1.5929 -6.7023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:37 Heat of formation + Delta-G solvation = -55.064174 kcal Electronic energy + Delta-G solvation = -19561.882888 eV Core-core repulsion = 16497.414404 eV Total energy + Delta-G solvation = -3064.468484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94441 -38.33066 -37.00086 -35.66655 -32.82726 -31.31165 -30.70222 -29.12296 -27.46182 -26.94962 -24.41156 -23.14010 -22.57085 -20.82722 -19.59202 -18.50216 -17.25686 -16.89211 -16.39474 -15.78044 -15.22687 -14.91626 -14.76366 -14.35267 -14.21929 -13.60711 -13.40502 -13.19069 -12.87599 -12.71668 -12.31678 -11.84501 -11.67753 -11.43791 -11.31874 -11.15081 -11.00056 -10.74874 -10.57673 -10.33927 -10.16682 -9.44107 -9.29234 -8.92908 -8.42435 -8.16248 -6.65818 -6.05381 -4.07591 1.65341 1.89671 3.16755 3.31915 3.36206 3.38831 3.39893 4.12459 4.20924 4.29754 4.43173 4.77361 4.85825 4.93655 5.18835 5.31447 5.40107 5.49229 5.58644 5.73644 5.77665 5.98896 6.04583 6.11022 6.26078 6.45326 6.51228 6.61991 6.72980 6.75477 6.85205 7.12734 7.46990 7.54060 7.68830 7.91921 8.05032 8.33372 8.42613 8.98663 9.57300 11.05519 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.004718 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.814669 B = 5932.999791 C = 6526.312618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.069 0.931 4 C 0.016 3.984 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.246 3.754 15 C -0.199 4.199 16 C -0.061 4.061 17 C -0.034 4.034 18 C 0.100 3.900 19 C -0.208 4.208 20 O -0.311 6.311 21 C 0.023 3.977 22 C 0.023 3.977 23 O -0.314 6.314 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.401 0.599 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 4.965 -17.686 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.021 4.021 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.338 5.338 14 C 0.138 3.862 15 C -0.222 4.222 16 C -0.080 4.080 17 C -0.079 4.079 18 C 0.055 3.945 19 C -0.232 4.232 20 O -0.225 6.225 21 C -0.053 4.053 22 C -0.053 4.053 23 O -0.230 6.230 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.236 0.764 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.639 4.962 -17.357 18.416 hybrid contribution 1.294 -0.387 -0.061 1.352 sum -2.345 4.575 -17.419 18.161 Atomic orbital electron populations 1.22301 0.97646 1.01594 1.00830 1.21233 0.91267 0.97197 0.86092 0.91325 1.19387 0.96300 0.95775 0.90678 1.21154 0.91801 1.34608 1.08002 0.92463 1.24997 0.98344 0.95277 0.95668 1.69947 1.35657 1.35933 1.11958 0.86668 0.85807 0.78286 0.77319 1.20247 1.21352 1.20286 1.45024 1.70069 1.12490 1.06168 1.17555 0.91430 0.91166 0.86090 1.20488 1.10490 0.93236 0.98001 1.20085 0.99254 0.99355 0.89294 1.18484 1.12049 0.89701 0.87693 1.18477 0.99230 0.89447 0.87375 1.19654 1.12630 1.00620 0.90268 1.86274 1.75927 1.47237 1.13102 1.23546 1.02646 0.94007 0.85126 1.23459 0.95473 0.94105 0.92279 1.86259 1.67510 1.46591 1.22598 0.92249 0.93550 0.92935 0.96075 0.95072 0.92912 0.76368 0.85041 0.85489 0.85351 0.90867 0.86725 0.86881 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.43 37.15 0.35 -2.35 16 2 C 0.15 2.83 2.21 -67.94 -0.15 2.68 16 3 H 0.07 1.35 6.48 -51.92 -0.34 1.01 16 4 C 0.02 0.38 4.52 -27.88 -0.13 0.26 16 5 C -0.52 -13.94 8.84 -34.44 -0.30 -14.25 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.71 -13.11 4.97 -52.15 -0.26 -13.37 16 14 C 0.25 4.29 6.64 -83.74 -0.56 3.73 16 15 C -0.20 -3.25 8.85 -39.38 -0.35 -3.60 16 16 C -0.06 -0.93 9.95 -39.44 -0.39 -1.32 16 17 C -0.03 -0.53 6.49 -39.14 -0.25 -0.79 16 18 C 0.10 1.63 6.49 -39.15 -0.25 1.38 16 19 C -0.21 -3.52 9.81 -39.22 -0.38 -3.90 16 20 O -0.31 -4.57 10.42 -32.90 -0.34 -4.91 16 21 C 0.02 0.23 7.26 37.40 0.27 0.50 16 22 C 0.02 0.23 7.26 37.40 0.27 0.50 16 23 O -0.31 -4.45 10.42 -33.26 -0.35 -4.80 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.70 7.72 -51.93 -0.40 0.30 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.40 7.41 8.62 -40.82 -0.35 7.06 16 31 H 0.13 2.04 6.11 -52.49 -0.32 1.72 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -30.46 309.40 -7.72 -38.19 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.18 Total: 4.71 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.97 Total: -15.63 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.48 Total: -38.75 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.69 Total: -9.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.46 -7.72 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.877 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds