Wall clock time and date at job start Mon Mar 30 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46500 * 109.47274 * 240.00496 * 2 1 3 14 14 C 1.39923 * 120.00257 * 84.99579 * 13 2 1 15 15 C 1.38852 * 120.02189 * 0.02562 * 14 13 2 16 16 C 1.38154 * 120.03331 * 180.02562 * 15 14 13 17 17 C 1.38695 * 120.16640 * 359.97065 * 16 15 14 18 18 C 1.38982 * 119.93600 * 359.94871 * 17 16 15 19 19 C 1.38669 * 119.89027 * 359.85773 * 18 17 16 20 20 O 1.36119 * 120.78141 * 180.21283 * 18 17 16 21 21 C 1.43165 * 116.71530 * 342.70048 * 20 18 17 22 22 C 1.53469 * 108.23519 * 46.28717 * 21 20 18 23 23 O 1.36230 * 119.31488 * 179.80650 * 17 16 15 24 24 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 26 26 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 28 28 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97002 * 119.99373 * 264.99828 * 13 2 1 31 31 H 1.07999 * 119.99089 * 0.04746 * 15 14 13 32 32 H 1.07997 * 119.92262 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.99299 * 180.18209 * 19 18 17 34 34 H 1.09003 * 109.71300 * 286.60313 * 21 20 18 35 35 H 1.09003 * 109.71320 * 165.97094 * 21 20 18 36 36 H 1.08997 * 109.71518 * 180.54435 * 22 21 20 37 37 H 1.08999 * 109.74381 * 59.93707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.4787 0.3828 2.5007 11 1 6.5856 -1.7455 3.6588 12 1 6.6882 -1.6765 1.2372 13 7 2.0183 -0.6905 -1.1962 14 6 2.1519 0.0076 -2.4015 15 6 1.8222 1.3549 -2.4642 16 6 1.9535 2.0443 -3.6543 17 6 2.4151 1.3940 -4.7891 18 6 2.7475 0.0459 -4.7291 19 6 2.6194 -0.6449 -3.5335 20 8 3.2062 -0.6082 -5.8312 21 6 2.9715 0.0195 -7.0963 22 6 3.3492 1.5020 -6.9743 23 8 2.5341 2.0896 -5.9544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.7517 -1.7715 1.2056 28 1 1.6054 -0.2617 2.1369 29 1 4.0601 -2.2360 4.0401 30 1 2.2490 -1.6317 -1.1526 31 1 1.4633 1.8645 -1.5822 32 1 1.6962 3.0921 -3.7011 33 1 2.8801 -1.6918 -3.4843 34 1 1.9182 -0.0709 -7.3618 35 1 3.5860 -0.4546 -7.8616 36 1 3.1702 2.0063 -7.9238 37 1 4.4008 1.5929 -6.7023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:36 Heat of formation + Delta-G solvation = -73.733808 kcal Electronic energy + Delta-G solvation = -19562.692464 eV Core-core repulsion = 16497.414404 eV Total energy + Delta-G solvation = -3065.278060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02694 -39.62197 -38.06248 -37.11469 -34.76496 -32.75609 -31.77322 -30.32055 -29.22485 -28.21347 -25.51200 -24.97303 -23.78500 -22.15322 -20.92402 -19.62118 -18.47722 -18.35376 -18.02564 -17.13021 -16.54632 -16.25376 -16.10523 -15.71817 -15.25646 -14.86416 -14.68483 -14.49754 -14.33228 -14.04791 -13.64605 -13.53198 -13.26210 -12.97545 -12.71200 -12.60060 -12.48261 -12.38244 -11.90466 -11.85865 -11.36660 -11.24035 -11.18322 -10.56745 -10.28807 -9.38014 -8.19217 -7.97224 -6.26878 0.41836 0.65327 1.39547 1.40223 1.48379 2.13263 2.38912 2.40902 2.82175 2.91574 3.16574 3.45558 3.82522 4.02613 4.15789 4.20189 4.27553 4.35780 4.53119 4.54476 4.56704 4.65426 4.68402 4.89968 4.93124 5.10429 5.16398 5.27311 5.31411 5.42295 5.49184 5.55748 5.67263 5.82599 6.04393 6.24872 6.53112 6.65529 6.87448 6.97942 7.41646 8.92037 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.004718 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.814669 B = 5932.999791 C = 6526.312618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.066 0.934 4 C 0.022 3.978 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.721 5.721 14 C 0.230 3.770 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.034 4.034 18 C 0.093 3.907 19 C -0.220 4.220 20 O -0.328 6.328 21 C 0.015 3.985 22 C 0.016 3.984 23 O -0.325 6.325 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.001 0.999 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.397 0.603 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 6.084 -19.835 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.015 4.015 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.124 3.876 15 C -0.227 4.227 16 C -0.081 4.081 17 C -0.080 4.080 18 C 0.047 3.953 19 C -0.244 4.244 20 O -0.243 6.243 21 C -0.060 4.060 22 C -0.059 4.059 23 O -0.241 6.241 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.231 0.769 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.187 6.100 -19.549 20.725 hybrid contribution 1.171 -0.709 0.428 1.435 sum -2.016 5.391 -19.122 19.969 Atomic orbital electron populations 1.22189 0.95261 1.01869 1.02051 1.20941 0.93040 0.96130 0.84484 0.91566 1.19246 0.94962 0.94914 0.92414 1.21474 0.93381 1.33872 1.07566 0.92860 1.25783 1.02727 0.95149 0.95503 1.70059 1.37315 1.37044 1.12634 0.85688 0.80643 0.78452 0.77357 1.19583 1.20909 1.19930 1.44884 1.71200 1.12267 1.06327 1.17676 0.92474 0.91727 0.85754 1.20616 1.10523 0.92824 0.98749 1.20348 0.98582 1.00371 0.88823 1.18653 1.11142 0.89632 0.88574 1.18561 0.99077 0.89809 0.87814 1.19753 1.13077 1.00822 0.90756 1.86245 1.75756 1.48124 1.14147 1.23956 1.04013 0.94218 0.83798 1.23838 0.94967 0.94406 0.92687 1.86241 1.68253 1.46997 1.22576 0.91469 0.91782 0.93154 0.98108 0.97074 0.92888 0.76872 0.84486 0.83278 0.85462 0.90221 0.83132 0.82930 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.43 71.98 0.68 -4.30 16 2 C 0.16 6.16 2.21 44.99 0.10 6.26 16 3 H 0.07 2.59 6.48 -2.38 -0.02 2.57 16 4 C 0.02 1.09 4.52 29.85 0.13 1.22 16 5 C -0.52 -28.70 8.84 25.60 0.23 -28.47 16 6 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.72 -26.81 4.97 -318.91 -1.59 -28.39 16 14 C 0.23 7.99 6.64 38.12 0.25 8.25 16 15 C -0.20 -6.47 8.85 22.40 0.20 -6.27 16 16 C -0.06 -1.80 9.95 22.36 0.22 -1.58 16 17 C -0.03 -1.03 6.49 22.56 0.15 -0.88 16 18 C 0.09 2.95 6.49 22.55 0.15 3.10 16 19 C -0.22 -7.44 9.81 22.50 0.22 -7.22 16 20 O -0.33 -9.13 10.42 -82.68 -0.86 -9.99 16 21 C 0.01 0.25 7.26 72.14 0.52 0.78 16 22 C 0.02 0.27 7.26 72.14 0.52 0.80 16 23 O -0.32 -8.39 10.42 -83.95 -0.87 -9.26 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.83 7.72 -2.39 -0.02 1.81 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 30 H 0.40 15.11 8.62 -92.71 -0.80 14.31 16 31 H 0.14 4.10 6.11 -2.91 -0.02 4.08 16 32 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 33 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.48 309.40 3.10 -62.37 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.28 Total: 21.19 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.84 Total: -27.50 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.30 Total: -83.25 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.74 Total: -19.26 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.48 3.10 -62.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.360 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds