Wall clock time and date at job start Mon Mar 30 2020 06:52:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09007 * 109.47521 * 2 1
4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3
5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1
6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2
7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2
8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.47454 * 59.99696 * 9 7 5
11 11 H 1.48506 * 109.47297 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47261 * 299.99689 * 9 7 5
13 13 N 1.46497 * 109.47340 * 120.00250 * 2 1 3
14 14 C 1.39923 * 119.99715 * 275.00204 * 13 2 1
15 15 C 1.38865 * 120.02583 * 359.97438 * 14 13 2
16 16 C 1.38147 * 120.03097 * 180.02562 * 15 14 13
17 17 C 1.38693 * 120.17285 * 359.96474 * 16 15 14
18 18 C 1.38982 * 119.93563 * 359.95523 * 17 16 15
19 19 C 1.38669 * 119.88715 * 359.85542 * 18 17 16
20 20 O 1.36107 * 120.78113 * 180.20676 * 18 17 16
21 21 C 1.43176 * 116.72144 * 342.70176 * 20 18 17
22 22 C 1.53474 * 108.22682 * 46.28260 * 21 20 18
23 23 O 1.36230 * 119.31562 * 179.80749 * 17 16 15
24 24 H 1.08997 * 109.47474 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.46922 * 300.00404 * 1 2 3
26 26 H 1.09006 * 109.46822 * 59.99692 * 1 2 3
27 27 H 1.09001 * 109.47002 * 294.99868 * 4 2 1
28 28 H 1.08993 * 109.46955 * 55.00306 * 4 2 1
29 29 H 0.96996 * 120.00505 * 179.97438 * 8 7 5
30 30 H 0.97001 * 120.00293 * 94.99036 * 13 2 1
31 31 H 1.08003 * 119.97968 * 0.02562 * 15 14 13
32 32 H 1.08006 * 119.91403 * 179.97438 * 16 15 14
33 33 H 1.08000 * 119.98826 * 180.18292 * 19 18 17
34 34 H 1.09004 * 109.70701 * 286.60815 * 21 20 18
35 35 H 1.08994 * 109.71736 * 165.96939 * 21 20 18
36 36 H 1.08998 * 109.70256 * 180.54602 * 22 21 20
37 37 H 1.09003 * 109.74006 * 59.94497 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5419 -0.6150 -1.3128
6 1 4.0789 -0.0856 -0.5395
7 6 4.2303 -1.1927 -2.3584
8 7 3.5763 -1.8369 -3.3001
9 14 6.0919 -1.0604 -2.4373
10 1 6.6845 -1.6865 -1.2282
11 1 6.5870 -1.7605 -3.6498
12 1 6.4844 0.3706 -2.4966
13 7 2.0183 -0.6906 1.1961
14 6 2.1519 0.0074 2.4014
15 6 1.8222 1.3549 2.4642
16 6 1.9546 2.0443 3.6541
17 6 2.4159 1.3940 4.7889
18 6 2.7451 0.0450 4.7297
19 6 2.6085 -0.6479 3.5363
20 8 3.1955 -0.6112 5.8338
21 6 3.6701 0.1985 6.9151
22 6 2.6535 1.3230 7.1548
23 8 2.5435 2.0916 5.9520
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 1.7516 -1.7715 -1.2057
28 1 1.6054 -0.2617 -2.1370
29 1 4.0606 -2.2430 -4.0359
30 1 2.2489 -1.6318 1.1526
31 1 1.4622 1.8641 1.5825
32 1 1.6980 3.0924 3.7007
33 1 2.8611 -1.6969 3.4892
34 1 4.6381 0.6272 6.6558
35 1 3.7654 -0.4089 7.8150
36 1 2.9968 1.9613 7.9689
37 1 1.6835 0.8947 7.4075
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695781586.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:52:39
Heat of formation + Delta-G solvation = -55.079011 kcal
Electronic energy + Delta-G solvation = -19562.713662 eV
Core-core repulsion = 16498.244534 eV
Total energy + Delta-G solvation = -3064.469128 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.94435 -38.33039 -37.00088 -35.66671 -32.82855 -31.31188 -30.70174 -29.12313
-27.46284 -26.94953 -24.41067 -23.14113 -22.57140 -20.82797 -19.58872 -18.50205
-17.25933 -16.89603 -16.39224 -15.78717 -15.21268 -14.91741 -14.75975 -14.34634
-14.22721 -13.57569 -13.51400 -13.08926 -12.95051 -12.66724 -12.29632 -11.85610
-11.69001 -11.50786 -11.31981 -11.08663 -10.97105 -10.73912 -10.59314 -10.32518
-10.21683 -9.43490 -9.29189 -8.92344 -8.42549 -8.16056 -6.65990 -6.05379
-4.07657 1.65170 1.90051 3.16225 3.31825 3.36131 3.38981 3.39781
4.14914 4.18827 4.29694 4.43095 4.77654 4.85704 4.93756 5.18884
5.31426 5.40117 5.49206 5.58620 5.73654 5.77637 5.98787 6.04525
6.11026 6.26119 6.45307 6.51215 6.61963 6.72972 6.75416 6.85251
7.12761 7.46973 7.54034 7.68862 7.91870 8.04991 8.33351 8.42548
8.98615 9.57272 11.05534
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.024289 B = 0.004733 C = 0.004276
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1152.529475 B = 5914.601690 C = 6546.098957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.147 3.853
3 H 0.069 0.931
4 C 0.016 3.984
5 C -0.517 4.517
6 H 0.057 0.943
7 C 0.059 3.941
8 N -0.896 5.896
9 Si 0.891 3.109
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.277 1.277
13 N -0.713 5.713
14 C 0.246 3.754
15 C -0.199 4.199
16 C -0.061 4.061
17 C -0.034 4.034
18 C 0.100 3.900
19 C -0.208 4.208
20 O -0.311 6.311
21 C 0.022 3.978
22 C 0.024 3.976
23 O -0.314 6.314
24 H 0.052 0.948
25 H 0.045 0.955
26 H 0.059 0.941
27 H 0.021 0.979
28 H 0.031 0.969
29 H 0.261 0.739
30 H 0.401 0.599
31 H 0.132 0.868
32 H 0.127 0.873
33 H 0.129 0.871
34 H 0.074 0.926
35 H 0.115 0.885
36 H 0.113 0.887
37 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.561 4.982 17.671 18.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.042 3.958
3 H 0.087 0.913
4 C -0.021 4.021
5 C -0.556 4.556
6 H 0.075 0.925
7 C -0.143 4.143
8 N -0.535 5.535
9 Si 0.719 3.281
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.202 1.202
13 N -0.337 5.337
14 C 0.138 3.862
15 C -0.222 4.222
16 C -0.080 4.080
17 C -0.079 4.079
18 C 0.055 3.945
19 C -0.232 4.232
20 O -0.226 6.226
21 C -0.054 4.054
22 C -0.053 4.053
23 O -0.229 6.229
24 H 0.071 0.929
25 H 0.064 0.936
26 H 0.078 0.922
27 H 0.039 0.961
28 H 0.049 0.951
29 H 0.071 0.929
30 H 0.236 0.764
31 H 0.150 0.850
32 H 0.145 0.855
33 H 0.146 0.854
34 H 0.092 0.908
35 H 0.133 0.867
36 H 0.131 0.869
37 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -3.597 4.978 17.343 18.398
hybrid contribution 1.276 -0.400 0.070 1.339
sum -2.320 4.579 17.413 18.154
Atomic orbital electron populations
1.22302 0.97644 1.01595 1.00831 1.21234 0.91262 0.97206 0.86095
0.91316 1.19388 0.96300 0.95775 0.90677 1.21152 0.91789 1.34489
1.08133 0.92463 1.24993 0.98340 0.95269 0.95674 1.69940 1.35660
1.35874 1.12029 0.86671 0.85820 0.78278 0.77321 1.20292 1.21352
1.20243 1.45023 1.70045 1.12494 1.06181 1.17560 0.91496 0.91123
0.86057 1.20492 1.10390 0.93196 0.98145 1.20085 0.98158 0.99648
0.90097 1.18485 1.10920 0.90945 0.87584 1.18472 0.98422 0.90470
0.87158 1.19654 1.13235 1.00882 0.89410 1.86264 1.78142 1.34257
1.23908 1.23556 0.97327 0.94165 0.90326 1.23452 0.99727 0.94805
0.87279 1.86263 1.90588 1.33473 1.12609 0.92932 0.93550 0.92246
0.96073 0.95075 0.92906 0.76366 0.85042 0.85490 0.85355 0.90788
0.86716 0.86888 0.91203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.70 9.43 37.16 0.35 -2.35 16
2 C 0.15 2.82 2.21 -67.93 -0.15 2.67 16
3 H 0.07 1.35 6.48 -51.93 -0.34 1.01 16
4 C 0.02 0.38 4.52 -27.88 -0.13 0.26 16
5 C -0.52 -13.94 8.84 -34.44 -0.30 -14.24 16
6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16
7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16
9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 N -0.71 -13.11 4.97 -52.14 -0.26 -13.37 16
14 C 0.25 4.29 6.64 -83.73 -0.56 3.74 16
15 C -0.20 -3.25 8.85 -39.38 -0.35 -3.60 16
16 C -0.06 -0.93 9.95 -39.45 -0.39 -1.32 16
17 C -0.03 -0.54 6.49 -39.14 -0.25 -0.79 16
18 C 0.10 1.64 6.49 -39.15 -0.25 1.38 16
19 C -0.21 -3.52 9.81 -39.22 -0.38 -3.90 16
20 O -0.31 -4.57 10.42 -32.87 -0.34 -4.91 16
21 C 0.02 0.23 7.26 37.40 0.27 0.50 16
22 C 0.02 0.23 7.26 37.40 0.27 0.51 16
23 O -0.31 -4.45 10.42 -33.26 -0.35 -4.79 16
24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
25 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16
26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
30 H 0.40 7.41 8.62 -40.82 -0.35 7.06 16
31 H 0.13 2.04 6.11 -52.48 -0.32 1.72 16
32 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16
33 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
LS Contribution 309.39 15.07 4.66 4.66
Total: -1.00 -30.45 309.39 -7.72 -38.18
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: -5.18 Total: 4.72 kcal
Atomic # 6 Polarization: -13.65 SS G_CDS: -1.97 Total: -15.63 kcal
Atomic # 7 Polarization: -39.22 SS G_CDS: 0.48 Total: -38.75 kcal
Atomic # 8 Polarization: -9.02 SS G_CDS: -0.69 Total: -9.71 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -30.45 -7.72 -38.18 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695781586.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.903 kcal
(2) G-P(sol) polarization free energy of solvation -30.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.356 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.079 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds