Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47454 * 59.99696 * 9 7 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47261 * 299.99689 * 9 7 5 13 13 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 14 14 C 1.39923 * 119.99715 * 275.00204 * 13 2 1 15 15 C 1.38865 * 120.02583 * 359.97438 * 14 13 2 16 16 C 1.38147 * 120.03097 * 180.02562 * 15 14 13 17 17 C 1.38693 * 120.17285 * 359.96474 * 16 15 14 18 18 C 1.38982 * 119.93563 * 359.95523 * 17 16 15 19 19 C 1.38669 * 119.88715 * 359.85542 * 18 17 16 20 20 O 1.36107 * 120.78113 * 180.20676 * 18 17 16 21 21 C 1.43176 * 116.72144 * 342.70176 * 20 18 17 22 22 C 1.53474 * 108.22682 * 46.28260 * 21 20 18 23 23 O 1.36230 * 119.31562 * 179.80749 * 17 16 15 24 24 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 26 26 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 27 27 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 28 28 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 29 29 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00293 * 94.99036 * 13 2 1 31 31 H 1.08003 * 119.97968 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.91403 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.98826 * 180.18292 * 19 18 17 34 34 H 1.09004 * 109.70701 * 286.60815 * 21 20 18 35 35 H 1.08994 * 109.71736 * 165.96939 * 21 20 18 36 36 H 1.08998 * 109.70256 * 180.54602 * 22 21 20 37 37 H 1.09003 * 109.74006 * 59.94497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5395 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8369 -3.3001 9 14 6.0919 -1.0604 -2.4373 10 1 6.6845 -1.6865 -1.2282 11 1 6.5870 -1.7605 -3.6498 12 1 6.4844 0.3706 -2.4966 13 7 2.0183 -0.6906 1.1961 14 6 2.1519 0.0074 2.4014 15 6 1.8222 1.3549 2.4642 16 6 1.9546 2.0443 3.6541 17 6 2.4159 1.3940 4.7889 18 6 2.7451 0.0450 4.7297 19 6 2.6085 -0.6479 3.5363 20 8 3.1955 -0.6112 5.8338 21 6 3.6701 0.1985 6.9151 22 6 2.6535 1.3230 7.1548 23 8 2.5435 2.0916 5.9520 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -1.7715 -1.2057 28 1 1.6054 -0.2617 -2.1370 29 1 4.0606 -2.2430 -4.0359 30 1 2.2489 -1.6318 1.1526 31 1 1.4622 1.8641 1.5825 32 1 1.6980 3.0924 3.7007 33 1 2.8611 -1.6969 3.4892 34 1 4.6381 0.6272 6.6558 35 1 3.7654 -0.4089 7.8150 36 1 2.9968 1.9613 7.9689 37 1 1.6835 0.8947 7.4075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -55.079011 kcal Electronic energy + Delta-G solvation = -19562.713662 eV Core-core repulsion = 16498.244534 eV Total energy + Delta-G solvation = -3064.469128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94435 -38.33039 -37.00088 -35.66671 -32.82855 -31.31188 -30.70174 -29.12313 -27.46284 -26.94953 -24.41067 -23.14113 -22.57140 -20.82797 -19.58872 -18.50205 -17.25933 -16.89603 -16.39224 -15.78717 -15.21268 -14.91741 -14.75975 -14.34634 -14.22721 -13.57569 -13.51400 -13.08926 -12.95051 -12.66724 -12.29632 -11.85610 -11.69001 -11.50786 -11.31981 -11.08663 -10.97105 -10.73912 -10.59314 -10.32518 -10.21683 -9.43490 -9.29189 -8.92344 -8.42549 -8.16056 -6.65990 -6.05379 -4.07657 1.65170 1.90051 3.16225 3.31825 3.36131 3.38981 3.39781 4.14914 4.18827 4.29694 4.43095 4.77654 4.85704 4.93756 5.18884 5.31426 5.40117 5.49206 5.58620 5.73654 5.77637 5.98787 6.04525 6.11026 6.26119 6.45307 6.51215 6.61963 6.72972 6.75416 6.85251 7.12761 7.46973 7.54034 7.68862 7.91870 8.04991 8.33351 8.42548 8.98615 9.57272 11.05534 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.004733 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.529475 B = 5914.601690 C = 6546.098957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.069 0.931 4 C 0.016 3.984 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.246 3.754 15 C -0.199 4.199 16 C -0.061 4.061 17 C -0.034 4.034 18 C 0.100 3.900 19 C -0.208 4.208 20 O -0.311 6.311 21 C 0.022 3.978 22 C 0.024 3.976 23 O -0.314 6.314 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.401 0.599 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 4.982 17.671 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.021 4.021 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.337 5.337 14 C 0.138 3.862 15 C -0.222 4.222 16 C -0.080 4.080 17 C -0.079 4.079 18 C 0.055 3.945 19 C -0.232 4.232 20 O -0.226 6.226 21 C -0.054 4.054 22 C -0.053 4.053 23 O -0.229 6.229 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.236 0.764 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.597 4.978 17.343 18.398 hybrid contribution 1.276 -0.400 0.070 1.339 sum -2.320 4.579 17.413 18.154 Atomic orbital electron populations 1.22302 0.97644 1.01595 1.00831 1.21234 0.91262 0.97206 0.86095 0.91316 1.19388 0.96300 0.95775 0.90677 1.21152 0.91789 1.34489 1.08133 0.92463 1.24993 0.98340 0.95269 0.95674 1.69940 1.35660 1.35874 1.12029 0.86671 0.85820 0.78278 0.77321 1.20292 1.21352 1.20243 1.45023 1.70045 1.12494 1.06181 1.17560 0.91496 0.91123 0.86057 1.20492 1.10390 0.93196 0.98145 1.20085 0.98158 0.99648 0.90097 1.18485 1.10920 0.90945 0.87584 1.18472 0.98422 0.90470 0.87158 1.19654 1.13235 1.00882 0.89410 1.86264 1.78142 1.34257 1.23908 1.23556 0.97327 0.94165 0.90326 1.23452 0.99727 0.94805 0.87279 1.86263 1.90588 1.33473 1.12609 0.92932 0.93550 0.92246 0.96073 0.95075 0.92906 0.76366 0.85042 0.85490 0.85355 0.90788 0.86716 0.86888 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.43 37.16 0.35 -2.35 16 2 C 0.15 2.82 2.21 -67.93 -0.15 2.67 16 3 H 0.07 1.35 6.48 -51.93 -0.34 1.01 16 4 C 0.02 0.38 4.52 -27.88 -0.13 0.26 16 5 C -0.52 -13.94 8.84 -34.44 -0.30 -14.24 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.71 -13.11 4.97 -52.14 -0.26 -13.37 16 14 C 0.25 4.29 6.64 -83.73 -0.56 3.74 16 15 C -0.20 -3.25 8.85 -39.38 -0.35 -3.60 16 16 C -0.06 -0.93 9.95 -39.45 -0.39 -1.32 16 17 C -0.03 -0.54 6.49 -39.14 -0.25 -0.79 16 18 C 0.10 1.64 6.49 -39.15 -0.25 1.38 16 19 C -0.21 -3.52 9.81 -39.22 -0.38 -3.90 16 20 O -0.31 -4.57 10.42 -32.87 -0.34 -4.91 16 21 C 0.02 0.23 7.26 37.40 0.27 0.50 16 22 C 0.02 0.23 7.26 37.40 0.27 0.51 16 23 O -0.31 -4.45 10.42 -33.26 -0.35 -4.79 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.40 7.41 8.62 -40.82 -0.35 7.06 16 31 H 0.13 2.04 6.11 -52.48 -0.32 1.72 16 32 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -30.45 309.39 -7.72 -38.18 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.18 Total: 4.72 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.97 Total: -15.63 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.48 Total: -38.75 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.69 Total: -9.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.45 -7.72 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.903 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds