Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47454 * 59.99696 * 9 7 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47261 * 299.99689 * 9 7 5 13 13 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 14 14 C 1.39923 * 119.99715 * 275.00204 * 13 2 1 15 15 C 1.38865 * 120.02583 * 359.97438 * 14 13 2 16 16 C 1.38147 * 120.03097 * 180.02562 * 15 14 13 17 17 C 1.38693 * 120.17285 * 359.96474 * 16 15 14 18 18 C 1.38982 * 119.93563 * 359.95523 * 17 16 15 19 19 C 1.38669 * 119.88715 * 359.85542 * 18 17 16 20 20 O 1.36107 * 120.78113 * 180.20676 * 18 17 16 21 21 C 1.43176 * 116.72144 * 342.70176 * 20 18 17 22 22 C 1.53474 * 108.22682 * 46.28260 * 21 20 18 23 23 O 1.36230 * 119.31562 * 179.80749 * 17 16 15 24 24 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 26 26 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 27 27 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 28 28 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 29 29 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00293 * 94.99036 * 13 2 1 31 31 H 1.08003 * 119.97968 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.91403 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.98826 * 180.18292 * 19 18 17 34 34 H 1.09004 * 109.70701 * 286.60815 * 21 20 18 35 35 H 1.08994 * 109.71736 * 165.96939 * 21 20 18 36 36 H 1.08998 * 109.70256 * 180.54602 * 22 21 20 37 37 H 1.09003 * 109.74006 * 59.94497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5395 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8369 -3.3001 9 14 6.0919 -1.0604 -2.4373 10 1 6.6845 -1.6865 -1.2282 11 1 6.5870 -1.7605 -3.6498 12 1 6.4844 0.3706 -2.4966 13 7 2.0183 -0.6906 1.1961 14 6 2.1519 0.0074 2.4014 15 6 1.8222 1.3549 2.4642 16 6 1.9546 2.0443 3.6541 17 6 2.4159 1.3940 4.7889 18 6 2.7451 0.0450 4.7297 19 6 2.6085 -0.6479 3.5363 20 8 3.1955 -0.6112 5.8338 21 6 3.6701 0.1985 6.9151 22 6 2.6535 1.3230 7.1548 23 8 2.5435 2.0916 5.9520 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -1.7715 -1.2057 28 1 1.6054 -0.2617 -2.1370 29 1 4.0606 -2.2430 -4.0359 30 1 2.2489 -1.6318 1.1526 31 1 1.4622 1.8641 1.5825 32 1 1.6980 3.0924 3.7007 33 1 2.8611 -1.6969 3.4892 34 1 4.6381 0.6272 6.6558 35 1 3.7654 -0.4089 7.8150 36 1 2.9968 1.9613 7.9689 37 1 1.6835 0.8947 7.4075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -73.736233 kcal Electronic energy + Delta-G solvation = -19563.522700 eV Core-core repulsion = 16498.244534 eV Total energy + Delta-G solvation = -3065.278166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02724 -39.62184 -38.06271 -37.11464 -34.76576 -32.75580 -31.77436 -30.31973 -29.22555 -28.21421 -25.51122 -24.97380 -23.78519 -22.15531 -20.92004 -19.62135 -18.48020 -18.35234 -18.02998 -17.13501 -16.51605 -16.29575 -16.08210 -15.71257 -15.26498 -14.82360 -14.73927 -14.52424 -14.29782 -14.07631 -13.58869 -13.52009 -13.18309 -13.09792 -12.82716 -12.60002 -12.41193 -12.24825 -11.96845 -11.87908 -11.37033 -11.26382 -11.16439 -10.56906 -10.27758 -9.38041 -8.19149 -7.97314 -6.26885 0.41630 0.65705 1.39554 1.40210 1.48368 2.11891 2.40056 2.40920 2.83590 2.90229 3.16630 3.45483 3.82463 4.02571 4.15878 4.20143 4.27512 4.35717 4.52977 4.54318 4.56865 4.65508 4.68338 4.89918 4.93174 5.10380 5.16422 5.27297 5.31401 5.42311 5.49172 5.55779 5.67231 5.82609 6.04375 6.24903 6.53117 6.65543 6.87469 6.97876 7.41686 8.92121 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.004733 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.529475 B = 5914.601690 C = 6546.098957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.066 0.934 4 C 0.022 3.978 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.721 5.721 14 C 0.230 3.770 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.034 4.034 18 C 0.093 3.907 19 C -0.220 4.220 20 O -0.327 6.327 21 C 0.014 3.986 22 C 0.017 3.983 23 O -0.325 6.325 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.001 0.999 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.397 0.603 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 6.106 19.820 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.015 4.015 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.347 5.347 14 C 0.124 3.876 15 C -0.227 4.227 16 C -0.081 4.081 17 C -0.080 4.080 18 C 0.047 3.953 19 C -0.244 4.244 20 O -0.242 6.242 21 C -0.061 4.061 22 C -0.058 4.058 23 O -0.241 6.241 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.231 0.769 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.137 6.121 19.535 20.711 hybrid contribution 1.152 -0.723 -0.420 1.424 sum -1.984 5.398 19.115 19.962 Atomic orbital electron populations 1.22191 0.95264 1.01866 1.02054 1.20942 0.93032 0.96140 0.84484 0.91552 1.19247 0.94966 0.94910 0.92414 1.21472 0.93367 1.33756 1.07694 0.92853 1.25779 1.02729 0.95138 0.95507 1.70052 1.37319 1.36986 1.12709 0.85689 0.80650 0.78446 0.77363 1.19922 1.20915 1.19582 1.44883 1.71182 1.12270 1.06338 1.17680 0.92561 0.91681 0.85718 1.20621 1.10424 0.92791 0.98875 1.20348 0.97529 1.00662 0.89600 1.18652 1.09989 0.90778 0.88551 1.18561 0.98403 0.90786 0.87551 1.19752 1.13649 1.01074 0.89916 1.86238 1.78063 1.35586 1.24322 1.23961 0.97182 0.94768 0.90195 1.23835 1.00147 0.95306 0.86476 1.86242 1.90367 1.34375 1.13147 0.93158 0.91783 0.91462 0.98113 0.97073 0.92883 0.76872 0.84486 0.83278 0.85459 0.90697 0.82994 0.83056 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.43 71.98 0.68 -4.30 16 2 C 0.16 6.15 2.21 44.99 0.10 6.25 16 3 H 0.07 2.59 6.48 -2.38 -0.02 2.58 16 4 C 0.02 1.09 4.52 29.85 0.13 1.22 16 5 C -0.52 -28.68 8.84 25.60 0.23 -28.46 16 6 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.72 -26.80 4.97 -318.89 -1.59 -28.39 16 14 C 0.23 7.99 6.64 38.13 0.25 8.24 16 15 C -0.20 -6.47 8.85 22.40 0.20 -6.27 16 16 C -0.06 -1.81 9.95 22.36 0.22 -1.59 16 17 C -0.03 -1.02 6.49 22.56 0.15 -0.87 16 18 C 0.09 2.94 6.49 22.55 0.15 3.09 16 19 C -0.22 -7.44 9.81 22.50 0.22 -7.21 16 20 O -0.33 -9.12 10.42 -82.54 -0.86 -9.98 16 21 C 0.01 0.24 7.26 72.14 0.52 0.76 16 22 C 0.02 0.29 7.26 72.14 0.52 0.81 16 23 O -0.33 -8.40 10.42 -83.95 -0.87 -9.28 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.83 7.71 -2.39 -0.02 1.81 16 26 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.40 15.11 8.62 -92.71 -0.80 14.31 16 31 H 0.14 4.10 6.11 -2.91 -0.02 4.08 16 32 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 33 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.45 309.39 3.10 -62.35 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.28 Total: 21.23 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 3.84 Total: -27.49 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.30 Total: -83.25 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.73 Total: -19.26 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.45 3.10 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.389 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds