Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.53000 * 109.46708 * 119.99358 * 2 1 3 5 5 C 1.50708 * 109.46969 * 184.99691 * 4 2 1 6 6 H 1.08000 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00190 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99945 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46993 * 90.00308 * 9 7 5 11 11 H 1.48497 * 109.47191 * 210.00117 * 9 7 5 12 12 H 1.48496 * 109.47030 * 330.00373 * 9 7 5 13 13 O 1.45198 * 109.46956 * 239.99036 * 2 1 3 14 14 C 1.34230 * 116.99296 * 90.00178 * 13 2 1 15 15 O 1.20819 * 120.00613 * 0.02562 * 14 13 2 16 16 C 1.50704 * 119.99958 * 179.97438 * 14 13 2 17 17 C 1.50696 * 109.47369 * 180.02562 * 16 14 13 18 18 C 1.38126 * 120.03682 * 264.99809 * 17 16 14 19 19 C 1.38265 * 120.07441 * 179.97438 * 18 17 16 20 20 C 1.38304 * 120.15230 * 359.97438 * 19 18 17 21 21 C 1.38088 * 120.07187 * 359.97438 * 20 19 18 22 22 C 1.38893 * 120.04007 * 85.23230 * 17 16 14 23 23 N 1.39669 * 120.07092 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46780 * 300.00509 * 1 2 3 26 26 H 1.08995 * 109.46784 * 60.00276 * 1 2 3 27 27 H 1.08991 * 109.47578 * 304.99913 * 4 2 1 28 28 H 1.09000 * 109.47394 * 65.00266 * 4 2 1 29 29 H 0.96995 * 119.99731 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46855 * 59.99996 * 16 14 13 31 31 H 1.09008 * 109.47188 * 300.00616 * 16 14 13 32 32 H 1.08007 * 119.96316 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.92127 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.96413 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.03354 * 179.97438 * 21 20 19 36 36 H 0.97008 * 120.00077 * 180.27407 * 23 22 17 37 37 H 0.96995 * 120.00716 * 0.28065 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0856 0.5396 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8366 3.3003 9 14 6.0919 -1.0601 2.4375 10 1 6.4697 0.1627 3.1907 11 1 6.6444 -2.2551 3.1246 12 1 6.6416 -0.9827 1.0602 13 8 2.0140 -0.6847 -1.1854 14 6 2.2171 0.0638 -2.2810 15 8 1.9982 1.2516 -2.2504 16 6 2.7193 -0.5773 -3.5491 17 6 2.8622 0.4727 -4.6205 18 6 1.8381 0.6833 -5.5232 19 6 1.9682 1.6469 -6.5062 20 6 3.1230 2.4034 -6.5889 21 6 4.1502 2.1988 -5.6890 22 6 4.0257 1.2266 -4.7044 23 7 5.0648 1.0133 -3.7959 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2058 29 1 4.0606 -2.2426 4.0361 30 1 2.0104 -1.3376 -3.8772 31 1 3.6884 -1.0404 -3.3630 32 1 0.9348 0.0945 -5.4612 33 1 1.1658 1.8097 -7.2105 34 1 3.2213 3.1556 -7.3577 35 1 5.0519 2.7896 -5.7544 36 1 5.8754 1.5432 -3.8529 37 1 4.9762 0.3353 -3.1079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -78.301819 kcal Electronic energy + Delta-G solvation = -19585.759316 eV Core-core repulsion = 16520.283172 eV Total energy + Delta-G solvation = -3065.476144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20665 -39.06672 -36.15673 -34.49005 -33.41585 -32.63421 -31.48188 -28.96815 -27.49834 -27.40497 -23.51475 -22.51297 -21.99483 -20.52151 -19.63261 -17.25768 -17.14657 -16.94478 -16.41533 -15.74094 -15.49490 -15.06593 -14.49687 -14.02154 -13.86177 -13.32468 -13.24087 -12.98147 -12.72044 -12.52043 -11.98059 -11.86870 -11.53570 -11.43630 -11.23129 -10.98723 -10.81826 -10.79151 -10.60983 -10.36264 -9.99787 -9.81585 -9.36316 -9.06397 -8.74077 -8.42524 -7.45469 -6.05578 -4.07331 1.42012 1.71121 2.78467 3.28053 3.34434 3.36461 3.37114 3.89548 4.06673 4.41171 4.72993 4.87266 5.10694 5.25284 5.29713 5.39587 5.49941 5.52663 5.65203 5.73461 5.84417 5.91688 6.01841 6.08151 6.32004 6.36667 6.55204 6.58557 6.67446 6.74467 6.94311 7.19035 7.49319 7.52966 7.67538 7.78137 7.90459 8.30055 8.46356 8.95556 9.55707 11.05860 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.005208 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.796844 B = 5374.578609 C = 6304.827626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.023 3.977 5 C -0.515 4.515 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 O -0.337 6.337 14 C 0.452 3.548 15 O -0.509 6.509 16 C -0.070 4.070 17 C -0.150 4.150 18 C -0.057 4.057 19 C -0.184 4.184 20 C -0.071 4.071 21 C -0.202 4.202 22 C 0.238 3.762 23 N -0.874 5.874 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.398 0.602 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 3.877 -17.258 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.013 4.013 5 C -0.553 4.553 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.253 6.253 14 C 0.294 3.706 15 O -0.398 6.398 16 C -0.107 4.107 17 C -0.155 4.155 18 C -0.076 4.076 19 C -0.204 4.204 20 C -0.090 4.090 21 C -0.224 4.224 22 C 0.132 3.868 23 N -0.412 5.412 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.226 0.774 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.210 4.123 -17.041 17.574 hybrid contribution 1.283 0.127 0.532 1.395 sum 0.073 4.251 -16.509 17.048 Atomic orbital electron populations 1.22225 0.96398 1.02108 1.01646 1.23143 0.91981 0.97585 0.83387 0.90933 1.19310 0.96547 0.96503 0.88975 1.21086 0.91731 1.34432 1.08033 0.92897 1.24975 0.98435 0.95230 0.95648 1.69948 1.35574 1.35894 1.12018 0.86580 0.85673 0.77566 0.78086 1.20676 1.21135 1.19993 1.86594 1.76023 1.42377 1.20293 1.23480 0.75136 0.86168 0.85810 1.90616 1.48049 1.16697 1.84458 1.20099 1.04010 0.97507 0.89121 1.18774 0.95088 1.01771 0.99822 1.20752 0.96707 0.96665 0.93464 1.20791 0.98780 0.99561 1.01252 1.20829 0.93029 0.97812 0.97339 1.20506 1.01197 1.01913 0.98833 1.17569 0.87757 0.92453 0.88986 1.42618 1.18299 1.44598 1.35703 0.92125 0.91203 0.93448 0.94284 0.95210 0.92889 0.87159 0.87848 0.86273 0.86555 0.86436 0.86415 0.77426 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.55 37.16 0.35 -2.68 16 2 C 0.09 2.04 2.50 -26.73 -0.07 1.97 16 3 H 0.07 1.69 7.16 -51.93 -0.37 1.31 16 4 C 0.02 0.60 4.69 -27.88 -0.13 0.47 16 5 C -0.51 -14.43 8.89 -34.44 -0.31 -14.74 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.34 -7.06 9.64 -39.26 -0.38 -7.44 16 14 C 0.45 8.40 7.92 36.01 0.29 8.69 16 15 O -0.51 -10.72 15.25 -18.74 -0.29 -11.00 16 16 C -0.07 -0.97 5.39 -29.03 -0.16 -1.13 16 17 C -0.15 -2.10 4.39 -104.42 -0.46 -2.56 16 18 C -0.06 -0.73 9.68 -39.61 -0.38 -1.11 16 19 C -0.18 -2.14 10.04 -39.55 -0.40 -2.54 16 20 C -0.07 -0.81 10.04 -39.61 -0.40 -1.21 16 21 C -0.20 -2.48 9.90 -39.38 -0.39 -2.87 16 22 C 0.24 3.26 6.73 -83.79 -0.56 2.70 16 23 N -0.87 -10.88 8.99 32.41 0.29 -10.59 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.11 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.10 1.32 6.80 -51.92 -0.35 0.96 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.40 4.03 8.84 -40.82 -0.36 3.67 16 37 H 0.40 5.23 6.93 -40.82 -0.28 4.95 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -32.45 319.98 -7.68 -40.13 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.13 Total: 6.79 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.71 Total: -13.45 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 1.03 Total: -36.27 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.66 Total: -18.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.45 -7.68 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.171 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds