Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.53000 * 109.46708 * 119.99358 * 2 1 3 5 5 C 1.50708 * 109.46969 * 184.99691 * 4 2 1 6 6 H 1.08000 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00190 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99945 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46993 * 90.00308 * 9 7 5 11 11 H 1.48497 * 109.47191 * 210.00117 * 9 7 5 12 12 H 1.48496 * 109.47030 * 330.00373 * 9 7 5 13 13 O 1.45198 * 109.46956 * 239.99036 * 2 1 3 14 14 C 1.34230 * 116.99296 * 90.00178 * 13 2 1 15 15 O 1.20819 * 120.00613 * 0.02562 * 14 13 2 16 16 C 1.50704 * 119.99958 * 179.97438 * 14 13 2 17 17 C 1.50696 * 109.47369 * 180.02562 * 16 14 13 18 18 C 1.38126 * 120.03682 * 264.99809 * 17 16 14 19 19 C 1.38265 * 120.07441 * 179.97438 * 18 17 16 20 20 C 1.38304 * 120.15230 * 359.97438 * 19 18 17 21 21 C 1.38088 * 120.07187 * 359.97438 * 20 19 18 22 22 C 1.38893 * 120.04007 * 85.23230 * 17 16 14 23 23 N 1.39669 * 120.07092 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46780 * 300.00509 * 1 2 3 26 26 H 1.08995 * 109.46784 * 60.00276 * 1 2 3 27 27 H 1.08991 * 109.47578 * 304.99913 * 4 2 1 28 28 H 1.09000 * 109.47394 * 65.00266 * 4 2 1 29 29 H 0.96995 * 119.99731 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46855 * 59.99996 * 16 14 13 31 31 H 1.09008 * 109.47188 * 300.00616 * 16 14 13 32 32 H 1.08007 * 119.96316 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.92127 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.96413 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.03354 * 179.97438 * 21 20 19 36 36 H 0.97008 * 120.00077 * 180.27407 * 23 22 17 37 37 H 0.96995 * 120.00716 * 0.28065 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0856 0.5396 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8366 3.3003 9 14 6.0919 -1.0601 2.4375 10 1 6.4697 0.1627 3.1907 11 1 6.6444 -2.2551 3.1246 12 1 6.6416 -0.9827 1.0602 13 8 2.0140 -0.6847 -1.1854 14 6 2.2171 0.0638 -2.2810 15 8 1.9982 1.2516 -2.2504 16 6 2.7193 -0.5773 -3.5491 17 6 2.8622 0.4727 -4.6205 18 6 1.8381 0.6833 -5.5232 19 6 1.9682 1.6469 -6.5062 20 6 3.1230 2.4034 -6.5889 21 6 4.1502 2.1988 -5.6890 22 6 4.0257 1.2266 -4.7044 23 7 5.0648 1.0133 -3.7959 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2058 29 1 4.0606 -2.2426 4.0361 30 1 2.0104 -1.3376 -3.8772 31 1 3.6884 -1.0404 -3.3630 32 1 0.9348 0.0945 -5.4612 33 1 1.1658 1.8097 -7.2105 34 1 3.2213 3.1556 -7.3577 35 1 5.0519 2.7896 -5.7544 36 1 5.8754 1.5432 -3.8529 37 1 4.9762 0.3353 -3.1079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -97.331323 kcal Electronic energy + Delta-G solvation = -19586.584497 eV Core-core repulsion = 16520.283172 eV Total energy + Delta-G solvation = -3066.301326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.59125 -40.18922 -37.76465 -35.43234 -35.39774 -33.85031 -33.20146 -29.93368 -29.39653 -28.47959 -25.40860 -23.73283 -23.12193 -21.88114 -21.17552 -18.77645 -18.52623 -18.13895 -17.91894 -17.20451 -16.86436 -16.45901 -16.20461 -15.05507 -14.91324 -14.78381 -14.58443 -14.23591 -14.09600 -13.82091 -13.69664 -13.35970 -13.28676 -13.03966 -12.67994 -12.60491 -12.26297 -12.15356 -11.88279 -11.71792 -11.52660 -11.46707 -11.36664 -10.95738 -10.59976 -9.68711 -8.40236 -8.22386 -6.32291 0.46635 0.78107 1.32511 1.38275 1.39174 1.49829 1.96799 2.38883 2.95107 3.08526 3.12534 3.68460 3.93524 3.98644 4.06602 4.22045 4.24231 4.36309 4.41020 4.51125 4.65674 4.75242 4.78942 4.96109 4.98979 5.10646 5.17224 5.34975 5.39260 5.44523 5.64584 5.72231 5.76710 5.82514 6.06525 6.16495 6.56993 6.77661 6.88021 6.92862 7.35277 8.89331 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.005208 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.796844 B = 5374.578609 C = 6304.827626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 H 0.055 0.945 4 C 0.029 3.971 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.350 6.350 14 C 0.451 3.549 15 O -0.536 6.536 16 C -0.061 4.061 17 C -0.173 4.173 18 C -0.068 4.068 19 C -0.190 4.190 20 C -0.073 4.073 21 C -0.213 4.213 22 C 0.218 3.782 23 N -0.875 5.875 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.023 0.977 28 H 0.009 0.991 29 H 0.265 0.735 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.406 0.594 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 4.251 -18.960 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.188 1.188 13 O -0.266 6.266 14 C 0.295 3.705 15 O -0.426 6.426 16 C -0.099 4.099 17 C -0.178 4.178 18 C -0.087 4.087 19 C -0.210 4.210 20 C -0.091 4.091 21 C -0.236 4.236 22 C 0.112 3.888 23 N -0.414 5.414 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.236 0.764 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.706 4.506 -18.765 19.311 hybrid contribution 1.102 0.050 1.007 1.494 sum 0.396 4.556 -17.757 18.337 Atomic orbital electron populations 1.22136 0.93437 1.03063 1.02757 1.22824 0.94227 0.95761 0.82796 0.92724 1.19140 0.95704 0.95443 0.90513 1.21390 0.93060 1.34584 1.08167 0.93317 1.25842 1.03525 0.94656 0.95121 1.70060 1.37615 1.36572 1.12611 0.85517 0.79557 0.77806 0.78618 1.20028 1.20408 1.18844 1.86580 1.76497 1.42906 1.20665 1.24388 0.74080 0.85925 0.86069 1.90594 1.49293 1.17940 1.84804 1.20203 1.04957 0.97998 0.86694 1.18909 0.95940 1.02565 1.00395 1.21054 0.96941 0.97174 0.93497 1.21151 0.99576 0.98969 1.01266 1.21231 0.92495 0.97968 0.97450 1.20822 1.02276 1.01783 0.98686 1.17867 0.88099 0.93102 0.89695 1.42624 1.18629 1.44657 1.35454 0.91232 0.90098 0.92293 0.95902 0.97242 0.92589 0.84504 0.86763 0.84820 0.84237 0.83706 0.84831 0.76425 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 9.55 71.98 0.69 -4.93 16 2 C 0.10 4.37 2.50 30.60 0.08 4.45 16 3 H 0.05 2.60 7.16 -2.39 -0.02 2.58 16 4 C 0.03 1.52 4.69 29.85 0.14 1.66 16 5 C -0.53 -30.44 8.89 25.60 0.23 -30.21 16 6 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 9 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 13 O -0.35 -14.71 9.64 -51.41 -0.50 -15.20 16 14 C 0.45 16.61 7.92 71.24 0.56 17.17 16 15 O -0.54 -22.53 15.25 21.98 0.34 -22.20 16 16 C -0.06 -1.65 5.39 29.10 0.16 -1.49 16 17 C -0.17 -4.64 4.39 -19.74 -0.09 -4.73 16 18 C -0.07 -1.61 9.68 22.25 0.22 -1.40 16 19 C -0.19 -3.96 10.04 22.29 0.22 -3.74 16 20 C -0.07 -1.48 10.04 22.25 0.22 -1.26 16 21 C -0.21 -4.87 9.90 22.40 0.22 -4.65 16 22 C 0.22 5.75 6.73 38.21 0.26 6.01 16 23 N -0.87 -21.23 8.99 -51.37 -0.46 -21.69 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.14 2.89 8.05 -2.38 -0.02 2.87 16 31 H 0.11 2.80 6.80 -2.38 -0.02 2.79 16 32 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.41 7.95 8.84 -92.70 -0.82 7.13 16 37 H 0.39 10.21 6.93 -92.71 -0.64 9.57 16 Total: -1.00 -69.56 319.98 4.68 -64.88 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.38 Total: 25.71 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 3.37 Total: -22.26 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.18 Total: -76.82 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.16 Total: -37.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.56 4.68 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.450 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds