Wall clock time and date at job start Mon Mar 30 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53002 * 109.46978 * 120.00092 * 2 1 3 5 5 C 1.50704 * 109.46805 * 185.00141 * 4 2 1 6 6 H 1.08001 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99798 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99906 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00126 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47080 * 90.00417 * 9 7 5 11 11 H 1.48501 * 109.47196 * 210.00388 * 9 7 5 12 12 H 1.48508 * 109.46912 * 330.00062 * 9 7 5 13 13 O 1.45206 * 109.46989 * 239.99883 * 2 1 3 14 14 C 1.34222 * 117.00150 * 90.00001 * 13 2 1 15 15 O 1.20828 * 119.99743 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00425 * 179.97438 * 14 13 2 17 17 C 1.50692 * 109.47453 * 180.02562 * 16 14 13 18 18 C 1.38313 * 119.96624 * 269.72463 * 17 16 14 19 19 C 1.38263 * 120.15146 * 179.72556 * 18 17 16 20 20 C 1.38126 * 120.07426 * 0.54978 * 19 18 17 21 21 C 1.38886 * 119.92408 * 359.72625 * 20 19 18 22 22 N 1.39678 * 120.07339 * 179.97438 * 21 20 19 23 23 C 1.38082 * 119.96435 * 90.00144 * 17 16 14 24 24 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47045 * 300.00075 * 1 2 3 27 27 H 1.09003 * 109.47073 * 304.99337 * 4 2 1 28 28 H 1.08993 * 109.47403 * 64.99978 * 4 2 1 29 29 H 0.97004 * 119.99697 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46719 * 300.00610 * 16 14 13 31 31 H 1.09000 * 109.47192 * 59.99797 * 16 14 13 32 32 H 1.08006 * 119.91681 * 359.97438 * 18 17 16 33 33 H 1.07996 * 119.95801 * 180.27730 * 19 18 17 34 34 H 1.07997 * 120.03473 * 179.75166 * 20 19 18 35 35 H 0.96997 * 119.99890 * 180.02562 * 22 21 20 36 36 H 0.97003 * 119.99746 * 0.02713 * 22 21 20 37 37 H 1.08004 * 120.03518 * 359.97436 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1935 2.3578 8 7 5.5412 -1.1011 2.4129 9 14 3.3015 -2.1087 3.6953 10 1 3.1700 -3.5386 3.3169 11 1 4.0453 -2.0020 4.9762 12 1 1.9508 -1.5129 3.8562 13 8 2.0140 -0.6845 -1.1856 14 6 2.2171 0.0639 -2.2811 15 8 1.9982 1.2517 -2.2504 16 6 2.7192 -0.5771 -3.5492 17 6 2.8621 0.4730 -4.6205 18 6 1.7999 0.7507 -5.4617 19 6 1.9250 1.7175 -6.4422 20 6 3.1156 2.4013 -6.5922 21 6 4.1861 2.1209 -5.7529 22 7 5.3918 2.8102 -5.9021 23 6 4.0552 1.1529 -4.7650 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 6.0256 -1.5085 3.1480 30 1 3.6883 -1.0402 -3.3631 31 1 2.0104 -1.3374 -3.8774 32 1 0.8694 0.2140 -5.3496 33 1 1.0921 1.9350 -7.0944 34 1 3.2139 3.1535 -7.3609 35 1 6.1388 2.6133 -5.3156 36 1 5.4819 3.4859 -6.5923 37 1 4.8856 0.9327 -4.1104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:50 Heat of formation + Delta-G solvation = -75.746002 kcal Electronic energy + Delta-G solvation = -19246.121529 eV Core-core repulsion = 16180.756213 eV Total energy + Delta-G solvation = -3065.365316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10104 -39.09041 -36.29207 -34.69176 -33.38464 -32.39124 -31.62511 -28.89941 -27.99878 -27.56997 -23.39090 -22.41975 -21.93271 -20.49913 -19.66586 -17.23876 -16.93670 -16.75767 -16.73545 -15.84020 -15.61372 -15.36677 -14.30788 -14.17438 -13.73349 -13.27248 -13.23026 -12.93889 -12.82256 -12.57436 -12.27988 -11.85989 -11.76821 -11.62011 -11.37735 -10.97685 -10.87896 -10.62464 -10.56909 -10.09198 -9.90086 -9.83659 -9.41170 -9.21381 -8.71275 -8.55209 -7.51284 -6.04761 -4.02820 1.42952 1.69577 2.80954 3.30195 3.34312 3.38384 3.39573 3.83873 4.04190 4.43662 4.72333 4.93266 5.19579 5.26744 5.34343 5.39035 5.47296 5.59910 5.61031 5.69678 5.73340 5.91688 5.94599 6.03939 6.27708 6.34977 6.43298 6.56032 6.58811 6.74184 6.90755 7.03564 7.06284 7.40751 7.48036 7.71358 7.72539 8.42306 8.51894 8.99077 9.55933 11.08777 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.004417 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.213733 B = 6337.914240 C = 7049.678731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.079 0.921 4 C -0.013 4.013 5 C -0.516 4.516 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.336 6.336 14 C 0.460 3.540 15 O -0.512 6.512 16 C -0.079 4.079 17 C -0.020 4.020 18 C -0.163 4.163 19 C -0.074 4.074 20 C -0.200 4.200 21 C 0.214 3.786 22 N -0.881 5.881 23 C -0.178 4.178 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.399 0.601 36 H 0.395 0.605 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 3.393 -16.806 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.050 4.050 5 C -0.554 4.554 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.190 1.190 13 O -0.252 6.252 14 C 0.303 3.697 15 O -0.400 6.400 16 C -0.117 4.117 17 C -0.021 4.021 18 C -0.183 4.183 19 C -0.092 4.092 20 C -0.223 4.223 21 C 0.110 3.890 22 N -0.420 5.420 23 C -0.200 4.200 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.227 0.773 36 H 0.223 0.777 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.694 3.671 -16.626 17.954 hybrid contribution 0.020 -0.160 0.830 0.846 sum -5.674 3.511 -15.796 17.148 Atomic orbital electron populations 1.22257 0.96261 1.02138 1.01957 1.22845 0.91787 0.97740 0.82904 0.90300 1.19780 0.98118 0.96212 0.90892 1.21005 0.89407 1.35314 1.09645 0.91104 1.24996 0.94751 0.95818 0.97800 1.69914 1.06526 1.45330 1.32334 0.86786 0.80367 0.80648 0.81521 1.20155 1.21347 1.19043 1.86567 1.76146 1.42265 1.20212 1.23289 0.74718 0.86035 0.85649 1.90625 1.48238 1.16670 1.84509 1.20324 1.04865 0.97514 0.88972 1.19035 0.93411 0.95391 0.94269 1.20734 0.98366 1.01168 0.98013 1.20771 0.96493 0.94832 0.97153 1.20520 0.93725 1.05083 1.02987 1.17697 0.86529 0.91185 0.93545 1.42449 1.12908 1.45257 1.41377 1.20473 0.98990 0.99861 1.00696 0.93037 0.92135 0.91177 0.94416 0.95702 0.92719 0.86743 0.87090 0.86509 0.86274 0.86604 0.77335 0.77688 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.55 37.16 0.35 -2.54 16 2 C 0.10 2.17 2.50 -26.73 -0.07 2.11 16 3 H 0.08 1.82 7.16 -51.93 -0.37 1.45 16 4 C -0.01 -0.31 3.76 -27.88 -0.10 -0.42 16 5 C -0.52 -14.87 9.44 -34.44 -0.33 -15.19 16 6 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 O -0.34 -7.07 9.64 -39.24 -0.38 -7.44 16 14 C 0.46 8.76 7.92 36.00 0.29 9.04 16 15 O -0.51 -10.97 15.25 -18.75 -0.29 -11.25 16 16 C -0.08 -1.13 5.94 -29.04 -0.17 -1.31 16 17 C -0.02 -0.29 4.37 -104.66 -0.46 -0.75 16 18 C -0.16 -2.12 9.70 -39.54 -0.38 -2.50 16 19 C -0.07 -0.87 10.04 -39.61 -0.40 -1.26 16 20 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16 21 C 0.21 2.69 6.75 -83.79 -0.57 2.13 16 22 N -0.88 -8.35 9.09 32.41 0.29 -8.06 16 23 C -0.18 -2.52 9.55 -39.38 -0.38 -2.90 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.88 7.20 -51.93 -0.37 0.51 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.11 1.53 8.08 -51.93 -0.42 1.11 16 31 H 0.11 1.27 8.08 -51.93 -0.42 0.85 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.40 3.39 8.84 -40.82 -0.36 3.03 16 36 H 0.40 2.82 8.84 -40.82 -0.36 2.46 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -34.05 319.78 -7.39 -41.44 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.25 Total: 5.16 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.70 Total: -14.45 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 1.07 Total: -35.14 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.66 Total: -18.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.05 -7.39 -41.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.307 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds