Wall clock time and date at job start Mon Mar 30 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53002 * 109.46978 * 120.00092 * 2 1 3 5 5 C 1.50704 * 109.46805 * 185.00141 * 4 2 1 6 6 H 1.08001 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99798 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99906 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00126 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47080 * 90.00417 * 9 7 5 11 11 H 1.48501 * 109.47196 * 210.00388 * 9 7 5 12 12 H 1.48508 * 109.46912 * 330.00062 * 9 7 5 13 13 O 1.45206 * 109.46989 * 239.99883 * 2 1 3 14 14 C 1.34222 * 117.00150 * 90.00001 * 13 2 1 15 15 O 1.20828 * 119.99743 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00425 * 179.97438 * 14 13 2 17 17 C 1.50692 * 109.47453 * 180.02562 * 16 14 13 18 18 C 1.38313 * 119.96624 * 269.72463 * 17 16 14 19 19 C 1.38263 * 120.15146 * 179.72556 * 18 17 16 20 20 C 1.38126 * 120.07426 * 0.54978 * 19 18 17 21 21 C 1.38886 * 119.92408 * 359.72625 * 20 19 18 22 22 N 1.39678 * 120.07339 * 179.97438 * 21 20 19 23 23 C 1.38082 * 119.96435 * 90.00144 * 17 16 14 24 24 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47045 * 300.00075 * 1 2 3 27 27 H 1.09003 * 109.47073 * 304.99337 * 4 2 1 28 28 H 1.08993 * 109.47403 * 64.99978 * 4 2 1 29 29 H 0.97004 * 119.99697 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46719 * 300.00610 * 16 14 13 31 31 H 1.09000 * 109.47192 * 59.99797 * 16 14 13 32 32 H 1.08006 * 119.91681 * 359.97438 * 18 17 16 33 33 H 1.07996 * 119.95801 * 180.27730 * 19 18 17 34 34 H 1.07997 * 120.03473 * 179.75166 * 20 19 18 35 35 H 0.96997 * 119.99890 * 180.02562 * 22 21 20 36 36 H 0.97003 * 119.99746 * 0.02713 * 22 21 20 37 37 H 1.08004 * 120.03518 * 359.97436 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1935 2.3578 8 7 5.5412 -1.1011 2.4129 9 14 3.3015 -2.1087 3.6953 10 1 3.1700 -3.5386 3.3169 11 1 4.0453 -2.0020 4.9762 12 1 1.9508 -1.5129 3.8562 13 8 2.0140 -0.6845 -1.1856 14 6 2.2171 0.0639 -2.2811 15 8 1.9982 1.2517 -2.2504 16 6 2.7192 -0.5771 -3.5492 17 6 2.8621 0.4730 -4.6205 18 6 1.7999 0.7507 -5.4617 19 6 1.9250 1.7175 -6.4422 20 6 3.1156 2.4013 -6.5922 21 6 4.1861 2.1209 -5.7529 22 7 5.3918 2.8102 -5.9021 23 6 4.0552 1.1529 -4.7650 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 6.0256 -1.5085 3.1480 30 1 3.6883 -1.0402 -3.3631 31 1 2.0104 -1.3374 -3.8774 32 1 0.8694 0.2140 -5.3496 33 1 1.0921 1.9350 -7.0944 34 1 3.2139 3.1535 -7.3609 35 1 6.1388 2.6133 -5.3156 36 1 5.4819 3.4859 -6.5923 37 1 4.8856 0.9327 -4.1104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:50 Heat of formation + Delta-G solvation = -97.547469 kcal Electronic energy + Delta-G solvation = -19247.066912 eV Core-core repulsion = 16180.756213 eV Total energy + Delta-G solvation = -3066.310698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55461 -40.16992 -37.87534 -35.66015 -35.35917 -33.77880 -33.20202 -29.96672 -29.77287 -28.63872 -25.15416 -23.67172 -23.10419 -21.88666 -21.23545 -19.00517 -18.71007 -17.86804 -17.75966 -17.08836 -16.95730 -16.68669 -16.25402 -15.26300 -14.89893 -14.81795 -14.49584 -14.38532 -14.17112 -13.99625 -13.80423 -13.48167 -13.28614 -12.96350 -12.61680 -12.46763 -12.31418 -11.94190 -11.87157 -11.74012 -11.59692 -11.47067 -11.31835 -11.08023 -10.77153 -9.71977 -8.40955 -8.29070 -6.34337 0.41696 0.73050 1.30460 1.38509 1.40828 1.52112 1.95973 2.37128 2.99406 3.03807 3.07426 3.63986 3.94763 3.99260 4.01961 4.19828 4.26127 4.36515 4.40104 4.49784 4.59507 4.72756 4.81007 4.90700 4.99872 5.04725 5.07539 5.19924 5.27444 5.40180 5.59497 5.61963 5.75321 5.75682 6.02135 6.22827 6.60440 6.69740 6.88971 7.00492 7.28614 8.88279 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.004417 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.213733 B = 6337.914240 C = 7049.678731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 H 0.050 0.950 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.019 0.981 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.239 1.239 13 O -0.350 6.350 14 C 0.456 3.544 15 O -0.541 6.541 16 C -0.072 4.072 17 C -0.038 4.038 18 C -0.176 4.176 19 C -0.074 4.074 20 C -0.204 4.204 21 C 0.206 3.794 22 N -0.872 5.872 23 C -0.208 4.208 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.402 0.598 36 H 0.408 0.592 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 2.798 -17.272 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.068 0.932 4 C -0.046 4.046 5 C -0.567 4.567 6 H 0.037 0.963 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.162 1.162 13 O -0.267 6.267 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.109 4.109 17 C -0.039 4.039 18 C -0.196 4.196 19 C -0.093 4.093 20 C -0.227 4.227 21 C 0.101 3.899 22 N -0.412 5.412 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.230 0.770 36 H 0.238 0.762 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.043 3.096 -17.122 19.169 hybrid contribution 0.868 0.126 0.864 1.231 sum -7.175 3.221 -16.258 18.061 Atomic orbital electron populations 1.22164 0.92339 1.03696 1.03188 1.22751 0.94740 0.95692 0.82500 0.93211 1.19729 0.94674 0.97316 0.92925 1.21261 0.92149 1.34784 1.08506 0.96281 1.26054 0.95659 0.96786 1.00736 1.70085 1.08749 1.46817 1.33646 0.85585 0.79827 0.79401 0.77394 1.18889 1.21067 1.16201 1.86550 1.76596 1.42835 1.20696 1.24201 0.73734 0.85839 0.86133 1.90596 1.49615 1.17970 1.84946 1.20445 1.05584 0.98148 0.86710 1.19139 0.94088 0.95915 0.94780 1.21000 0.98491 1.01874 0.98215 1.21176 0.97392 0.93848 0.96841 1.20893 0.93321 1.05371 1.03101 1.17881 0.87799 0.90948 0.93285 1.42440 1.12153 1.45011 1.41616 1.20584 0.99134 1.01456 1.01876 0.92466 0.90334 0.89335 0.92977 0.94497 0.92444 0.86400 0.83788 0.85025 0.83323 0.83995 0.76951 0.76198 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.55 71.98 0.69 -4.34 16 2 C 0.10 4.18 2.50 30.59 0.08 4.26 16 3 H 0.05 2.38 7.16 -2.39 -0.02 2.37 16 4 C -0.01 -0.44 3.76 29.85 0.11 -0.33 16 5 C -0.53 -31.40 9.44 25.60 0.24 -31.16 16 6 H 0.02 1.28 7.99 -2.91 -0.02 1.25 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -60.60 13.96 21.45 0.30 -60.31 16 9 Si 0.96 43.73 27.47 68.60 1.88 45.61 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 13 O -0.35 -14.93 9.64 -51.34 -0.50 -15.43 16 14 C 0.46 17.75 7.92 71.24 0.56 18.31 16 15 O -0.54 -23.90 15.25 21.96 0.33 -23.56 16 16 C -0.07 -2.07 5.94 29.10 0.17 -1.89 16 17 C -0.04 -1.11 4.37 -19.89 -0.09 -1.19 16 18 C -0.18 -4.36 9.70 22.29 0.22 -4.15 16 19 C -0.07 -1.59 10.04 22.25 0.22 -1.36 16 20 C -0.20 -4.40 9.90 22.40 0.22 -4.18 16 21 C 0.21 5.10 6.75 38.21 0.26 5.35 16 22 N -0.87 -16.07 9.09 -51.37 -0.47 -16.53 16 23 C -0.21 -6.08 9.55 22.40 0.21 -5.87 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 28 H 0.04 1.66 7.57 -2.39 -0.02 1.65 16 29 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.12 3.27 8.08 -2.38 -0.02 3.25 16 31 H 0.14 3.10 8.08 -2.39 -0.02 3.08 16 32 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.40 6.90 8.84 -92.71 -0.82 6.08 16 36 H 0.41 5.30 8.84 -92.71 -0.82 4.48 16 37 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -76.25 319.78 4.31 -71.94 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.61 Total: 24.12 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.36 Total: -25.84 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.17 Total: -76.84 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.16 Total: -38.99 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -76.25 4.31 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.611 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds