Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47140 * 2 1 4 4 C 1.53008 * 109.47177 * 240.00084 * 2 1 3 5 5 C 1.50698 * 109.46645 * 175.00292 * 4 2 1 6 6 H 1.08002 * 120.00688 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99688 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00148 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00061 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46973 * 89.99720 * 9 7 5 11 11 H 1.48500 * 109.47506 * 210.00165 * 9 7 5 12 12 H 1.48512 * 109.47042 * 330.00128 * 9 7 5 13 13 O 1.45202 * 109.46738 * 120.00145 * 2 1 3 14 14 C 1.34229 * 117.00156 * 269.99584 * 13 2 1 15 15 O 1.20823 * 119.99693 * 0.02562 * 14 13 2 16 16 C 1.50693 * 120.00399 * 179.97438 * 14 13 2 17 17 C 1.50697 * 109.47435 * 180.02562 * 16 14 13 18 18 C 1.38306 * 119.96482 * 270.02429 * 17 16 14 19 19 C 1.38263 * 120.14989 * 179.97438 * 18 17 16 20 20 C 1.38127 * 120.07619 * 0.02562 * 19 18 17 21 21 C 1.38888 * 119.92317 * 359.97438 * 20 19 18 22 22 N 1.39670 * 120.07346 * 180.02562 * 21 20 19 23 23 C 1.38085 * 119.96248 * 90.00178 * 17 16 14 24 24 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47467 * 300.00037 * 1 2 3 26 26 H 1.08999 * 109.46753 * 60.00037 * 1 2 3 27 27 H 1.08999 * 109.46984 * 295.00041 * 4 2 1 28 28 H 1.08997 * 109.46896 * 55.00575 * 4 2 1 29 29 H 0.96994 * 119.99836 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47124 * 60.00265 * 16 14 13 31 31 H 1.09006 * 109.47287 * 300.00910 * 16 14 13 32 32 H 1.07998 * 119.92297 * 0.02562 * 18 17 16 33 33 H 1.08002 * 119.96282 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.03576 * 180.02562 * 20 19 18 35 35 H 0.97006 * 120.00314 * 179.97438 * 22 21 20 36 36 H 0.96996 * 120.00101 * 359.95464 * 22 21 20 37 37 H 1.07998 * 120.03376 * 359.72337 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 5.5412 -1.1003 -2.4133 9 14 3.3016 -2.1077 -3.6959 10 1 2.9399 -1.1624 -4.7826 11 1 4.1603 -3.1878 -4.2447 12 1 2.0659 -2.7003 -3.1237 13 8 2.0139 -0.6845 1.1856 14 6 2.2171 0.0639 2.2812 15 8 1.9974 1.2516 2.2506 16 6 2.7181 -0.5773 3.5495 17 6 2.8601 0.4727 4.6211 18 6 4.0549 1.1540 4.7667 19 6 4.1892 2.1185 5.7482 20 6 3.1300 2.4043 6.5874 21 6 1.9288 1.7221 6.4440 22 7 0.8555 2.0090 7.2904 23 6 1.7970 0.7539 5.4563 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2057 28 1 1.6055 -0.2617 -2.1370 29 1 6.0254 -1.5064 -3.1491 30 1 3.6870 -1.0410 3.3641 31 1 2.0085 -1.3370 3.8774 32 1 4.8845 0.9327 4.1116 33 1 5.1234 2.6489 5.8589 34 1 3.2355 3.1581 7.3536 35 1 0.0168 1.5321 7.1891 36 1 0.9487 2.6849 7.9798 37 1 0.8628 0.2249 5.3390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -75.349386 kcal Electronic energy + Delta-G solvation = -19225.756328 eV Core-core repulsion = 16160.408211 eV Total energy + Delta-G solvation = -3065.348117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10651 -39.10179 -36.29727 -34.72097 -33.38040 -32.39846 -31.62433 -28.91955 -27.99394 -27.57555 -23.39369 -22.41611 -21.95092 -20.50516 -19.66718 -17.24035 -16.98600 -16.78337 -16.71553 -15.85421 -15.59516 -15.39771 -14.29253 -14.19029 -13.72819 -13.28510 -13.24960 -12.95391 -12.84917 -12.57118 -12.25261 -11.86698 -11.74860 -11.62707 -11.33870 -10.99279 -10.86225 -10.68396 -10.58096 -10.16389 -9.88981 -9.75060 -9.41013 -9.19968 -8.72753 -8.54449 -7.53926 -6.03487 -4.01642 1.41722 1.69606 2.80691 3.28925 3.35321 3.38732 3.41292 3.77465 4.03777 4.44635 4.71508 4.93784 5.17939 5.26741 5.32579 5.41362 5.50447 5.59230 5.60007 5.70007 5.72430 5.89616 5.93688 6.03965 6.27115 6.31280 6.42666 6.58657 6.59313 6.76125 6.89156 7.03563 7.05307 7.41460 7.43906 7.64429 7.73666 8.42270 8.52932 9.00544 9.57030 11.10027 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.004198 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.352184 B = 6667.621907 C = 7249.474196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.079 0.921 4 C -0.013 4.013 5 C -0.516 4.516 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.265 1.265 13 O -0.336 6.336 14 C 0.460 3.540 15 O -0.512 6.512 16 C -0.079 4.079 17 C -0.021 4.021 18 C -0.157 4.157 19 C -0.072 4.072 20 C -0.199 4.199 21 C 0.211 3.789 22 N -0.882 5.882 23 C -0.181 4.181 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.396 0.604 36 H 0.395 0.605 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 2.844 17.707 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.050 4.050 5 C -0.554 4.554 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 O -0.252 6.252 14 C 0.303 3.697 15 O -0.400 6.400 16 C -0.117 4.117 17 C -0.022 4.022 18 C -0.177 4.177 19 C -0.090 4.090 20 C -0.222 4.222 21 C 0.107 3.893 22 N -0.422 5.422 23 C -0.203 4.203 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.224 0.776 36 H 0.223 0.777 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.510 3.128 17.507 19.715 hybrid contribution -0.667 -0.247 -0.646 0.961 sum -9.177 2.881 16.861 19.412 Atomic orbital electron populations 1.22257 0.96316 1.02113 1.01919 1.22836 0.91731 0.97746 0.82968 0.90287 1.19767 0.98096 0.96468 0.90657 1.21006 0.89402 1.35292 1.09708 0.91052 1.24997 0.94756 0.95784 0.97825 1.69911 1.06529 1.45353 1.32237 0.86808 0.80309 0.80033 0.82316 1.20273 1.21266 1.18924 1.86565 1.76147 1.42241 1.20207 1.23289 0.74708 0.86034 0.85657 1.90624 1.48216 1.16678 1.84521 1.20326 1.04947 0.97469 0.88927 1.19043 0.93587 0.95581 0.93952 1.20853 0.97862 0.98759 1.00230 1.20827 0.97913 0.96202 0.94105 1.20533 0.93182 1.04299 1.04143 1.17667 0.88026 0.93370 0.90226 1.42407 1.13959 1.46983 1.38833 1.20357 0.99271 1.01986 0.98732 0.92148 0.93101 0.91175 0.95287 0.94867 0.92711 0.86525 0.87293 0.86044 0.86084 0.86586 0.77623 0.77685 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.55 37.16 0.35 -2.54 16 2 C 0.10 2.17 2.50 -26.73 -0.07 2.10 16 3 H 0.08 1.82 7.16 -51.93 -0.37 1.45 16 4 C -0.01 -0.31 3.76 -27.88 -0.10 -0.41 16 5 C -0.52 -14.90 9.44 -34.44 -0.33 -15.23 16 6 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 13 O -0.34 -7.06 9.64 -39.26 -0.38 -7.44 16 14 C 0.46 8.75 7.92 36.00 0.29 9.04 16 15 O -0.51 -10.95 15.25 -18.75 -0.29 -11.24 16 16 C -0.08 -1.13 5.94 -29.04 -0.17 -1.30 16 17 C -0.02 -0.30 4.37 -104.65 -0.46 -0.76 16 18 C -0.16 -2.23 9.70 -39.55 -0.38 -2.61 16 19 C -0.07 -0.89 10.04 -39.61 -0.40 -1.29 16 20 C -0.20 -2.32 9.90 -39.38 -0.39 -2.71 16 21 C 0.21 2.48 6.75 -83.79 -0.57 1.92 16 22 N -0.88 -7.30 9.09 32.41 0.29 -7.01 16 23 C -0.18 -2.36 9.55 -39.38 -0.38 -2.73 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 28 H 0.03 0.77 7.57 -51.93 -0.39 0.37 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.12 1.55 8.09 -51.93 -0.42 1.13 16 31 H 0.11 1.24 8.08 -51.93 -0.42 0.83 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.40 2.67 8.84 -40.82 -0.36 2.31 16 36 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -34.18 319.78 -7.39 -41.56 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.25 Total: 4.21 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.70 Total: -14.64 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 1.07 Total: -34.15 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.66 Total: -18.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.18 -7.39 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.785 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds