Wall clock time and date at job start Mon Mar 30 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47140 * 2 1 4 4 C 1.53008 * 109.47177 * 240.00084 * 2 1 3 5 5 C 1.50698 * 109.46645 * 175.00292 * 4 2 1 6 6 H 1.08002 * 120.00688 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99688 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00148 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00061 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46973 * 89.99720 * 9 7 5 11 11 H 1.48500 * 109.47506 * 210.00165 * 9 7 5 12 12 H 1.48512 * 109.47042 * 330.00128 * 9 7 5 13 13 O 1.45202 * 109.46738 * 120.00145 * 2 1 3 14 14 C 1.34229 * 117.00156 * 269.99584 * 13 2 1 15 15 O 1.20823 * 119.99693 * 0.02562 * 14 13 2 16 16 C 1.50693 * 120.00399 * 179.97438 * 14 13 2 17 17 C 1.50697 * 109.47435 * 180.02562 * 16 14 13 18 18 C 1.38306 * 119.96482 * 270.02429 * 17 16 14 19 19 C 1.38263 * 120.14989 * 179.97438 * 18 17 16 20 20 C 1.38127 * 120.07619 * 0.02562 * 19 18 17 21 21 C 1.38888 * 119.92317 * 359.97438 * 20 19 18 22 22 N 1.39670 * 120.07346 * 180.02562 * 21 20 19 23 23 C 1.38085 * 119.96248 * 90.00178 * 17 16 14 24 24 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47467 * 300.00037 * 1 2 3 26 26 H 1.08999 * 109.46753 * 60.00037 * 1 2 3 27 27 H 1.08999 * 109.46984 * 295.00041 * 4 2 1 28 28 H 1.08997 * 109.46896 * 55.00575 * 4 2 1 29 29 H 0.96994 * 119.99836 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47124 * 60.00265 * 16 14 13 31 31 H 1.09006 * 109.47287 * 300.00910 * 16 14 13 32 32 H 1.07998 * 119.92297 * 0.02562 * 18 17 16 33 33 H 1.08002 * 119.96282 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.03576 * 180.02562 * 20 19 18 35 35 H 0.97006 * 120.00314 * 179.97438 * 22 21 20 36 36 H 0.96996 * 120.00101 * 359.95464 * 22 21 20 37 37 H 1.07998 * 120.03376 * 359.72337 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 5.5412 -1.1003 -2.4133 9 14 3.3016 -2.1077 -3.6959 10 1 2.9399 -1.1624 -4.7826 11 1 4.1603 -3.1878 -4.2447 12 1 2.0659 -2.7003 -3.1237 13 8 2.0139 -0.6845 1.1856 14 6 2.2171 0.0639 2.2812 15 8 1.9974 1.2516 2.2506 16 6 2.7181 -0.5773 3.5495 17 6 2.8601 0.4727 4.6211 18 6 4.0549 1.1540 4.7667 19 6 4.1892 2.1185 5.7482 20 6 3.1300 2.4043 6.5874 21 6 1.9288 1.7221 6.4440 22 7 0.8555 2.0090 7.2904 23 6 1.7970 0.7539 5.4563 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2057 28 1 1.6055 -0.2617 -2.1370 29 1 6.0254 -1.5064 -3.1491 30 1 3.6870 -1.0410 3.3641 31 1 2.0085 -1.3370 3.8774 32 1 4.8845 0.9327 4.1116 33 1 5.1234 2.6489 5.8589 34 1 3.2355 3.1581 7.3536 35 1 0.0168 1.5321 7.1891 36 1 0.9487 2.6849 7.9798 37 1 0.8628 0.2249 5.3390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:53 Heat of formation + Delta-G solvation = -97.292627 kcal Electronic energy + Delta-G solvation = -19226.707858 eV Core-core repulsion = 16160.408211 eV Total energy + Delta-G solvation = -3066.299648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55676 -40.17490 -37.87551 -35.65267 -35.35424 -33.78062 -33.21602 -29.96480 -29.74926 -28.65104 -25.15343 -23.66686 -23.11829 -21.89290 -21.23284 -19.00389 -18.70452 -17.88858 -17.71117 -17.15442 -16.87606 -16.72841 -16.23562 -15.26491 -14.91768 -14.79100 -14.54161 -14.39048 -14.13609 -13.97062 -13.78538 -13.51951 -13.27998 -12.96822 -12.57991 -12.51143 -12.34032 -11.97400 -11.93251 -11.68699 -11.59025 -11.41201 -11.32345 -11.08704 -10.76907 -9.72271 -8.39636 -8.28149 -6.33523 0.41264 0.71353 1.30323 1.38502 1.41181 1.53033 1.96124 2.37768 2.99088 3.04413 3.07854 3.64011 3.95885 3.98149 4.00309 4.19753 4.27159 4.36156 4.39172 4.49303 4.58020 4.72158 4.80656 4.90111 4.98154 5.04485 5.08387 5.18746 5.28069 5.38413 5.60091 5.61268 5.75711 5.76483 5.98996 6.23729 6.62985 6.70761 6.88962 7.04688 7.29352 8.89223 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.004198 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.352184 B = 6667.621907 C = 7249.474196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 H 0.050 0.950 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.019 0.981 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.239 1.239 13 O -0.350 6.350 14 C 0.456 3.544 15 O -0.541 6.541 16 C -0.072 4.072 17 C -0.038 4.038 18 C -0.188 4.188 19 C -0.078 4.078 20 C -0.204 4.204 21 C 0.210 3.790 22 N -0.868 5.868 23 C -0.195 4.195 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.267 0.733 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.405 0.595 36 H 0.408 0.592 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 2.198 18.205 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.068 0.932 4 C -0.046 4.046 5 C -0.567 4.567 6 H 0.038 0.962 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.163 1.163 13 O -0.267 6.267 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.109 4.109 17 C -0.039 4.039 18 C -0.208 4.208 19 C -0.096 4.096 20 C -0.226 4.226 21 C 0.104 3.896 22 N -0.408 5.408 23 C -0.217 4.217 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.234 0.766 36 H 0.237 0.763 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.107 2.495 18.048 21.338 hybrid contribution 0.203 0.056 -0.672 0.704 sum -10.903 2.551 17.376 20.671 Atomic orbital electron populations 1.22162 0.92371 1.03645 1.03191 1.22746 0.94706 0.95710 0.82545 0.93168 1.19719 0.94651 0.97426 0.92829 1.21265 0.92164 1.34768 1.08544 0.96241 1.26063 0.95672 0.96766 1.00789 1.70083 1.08766 1.46845 1.33570 0.85590 0.79479 0.78591 0.78567 1.18891 1.20984 1.16253 1.86549 1.76601 1.42819 1.20696 1.24199 0.73725 0.85839 0.86141 1.90595 1.49590 1.17976 1.84958 1.20443 1.05706 0.98086 0.86649 1.19120 0.94215 0.96085 0.94435 1.20975 0.98031 1.00337 1.01439 1.21096 0.99170 0.95705 0.93648 1.20862 0.92794 1.04622 1.04366 1.17822 0.88927 0.92710 0.90121 1.42378 1.13405 1.46918 1.38140 1.20555 0.99411 1.02722 0.99035 0.90403 0.92523 0.89262 0.94378 0.93115 0.92435 0.86110 0.84010 0.87151 0.84310 0.83998 0.76550 0.76261 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 9.55 71.98 0.69 -4.32 16 2 C 0.10 4.17 2.50 30.60 0.08 4.25 16 3 H 0.05 2.40 7.16 -2.39 -0.02 2.38 16 4 C -0.01 -0.43 3.76 29.85 0.11 -0.32 16 5 C -0.53 -31.49 9.44 25.60 0.24 -31.25 16 6 H 0.02 1.31 7.99 -2.91 -0.02 1.28 16 7 C 0.00 0.22 5.47 84.66 0.46 0.68 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.96 43.78 27.47 68.60 1.88 45.67 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 O -0.35 -14.93 9.64 -51.41 -0.50 -15.43 16 14 C 0.46 17.74 7.92 71.23 0.56 18.30 16 15 O -0.54 -23.88 15.25 21.97 0.34 -23.54 16 16 C -0.07 -2.06 5.94 29.10 0.17 -1.89 16 17 C -0.04 -1.09 4.37 -19.89 -0.09 -1.17 16 18 C -0.19 -5.50 9.70 22.29 0.22 -5.29 16 19 C -0.08 -1.91 10.04 22.25 0.22 -1.69 16 20 C -0.20 -4.43 9.90 22.40 0.22 -4.20 16 21 C 0.21 4.58 6.75 38.21 0.26 4.84 16 22 N -0.87 -12.16 9.09 -51.37 -0.47 -12.63 16 23 C -0.19 -4.86 9.55 22.40 0.21 -4.65 16 24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 28 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 29 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.12 3.33 8.09 -2.39 -0.02 3.31 16 31 H 0.14 3.05 8.08 -2.38 -0.02 3.03 16 32 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.41 4.41 8.84 -92.70 -0.82 3.59 16 36 H 0.41 3.89 8.84 -92.71 -0.82 3.07 16 37 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -76.59 319.78 4.31 -72.28 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.61 Total: 20.83 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.36 Total: -26.71 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -0.17 Total: -73.09 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.16 Total: -38.97 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -76.59 4.31 -72.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.015 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds