Wall clock time and date at job start Mon Mar 30 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08989 * 109.47651 * 2 1 4 4 C 1.53001 * 109.46972 * 120.00243 * 2 1 3 5 5 C 1.50703 * 109.47128 * 184.99808 * 4 2 1 6 6 H 1.08000 * 120.00221 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00015 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99958 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47166 * 120.00077 * 9 7 5 12 12 H 1.48493 * 109.47236 * 240.00247 * 9 7 5 13 13 O 1.45203 * 109.46994 * 239.99539 * 2 1 3 14 14 C 1.34227 * 116.99550 * 90.00282 * 13 2 1 15 15 O 1.20826 * 119.99982 * 0.02562 * 14 13 2 16 16 C 1.50701 * 120.00312 * 179.97438 * 14 13 2 17 17 C 1.50689 * 109.47698 * 179.97438 * 16 14 13 18 18 C 1.38293 * 119.92619 * 90.00181 * 17 16 14 19 19 C 1.38103 * 120.07544 * 180.02562 * 18 17 16 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46938 * 300.00467 * 1 2 3 26 26 H 1.09003 * 109.47129 * 60.00133 * 1 2 3 27 27 H 1.08999 * 109.47052 * 304.99446 * 4 2 1 28 28 H 1.08998 * 109.47204 * 64.99696 * 4 2 1 29 29 H 0.96996 * 119.99752 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46897 * 59.99591 * 16 14 13 31 31 H 1.09003 * 109.46911 * 300.00907 * 16 14 13 32 32 H 1.08001 * 119.95790 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.03416 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 36 36 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 37 37 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3584 8 7 3.5763 -1.8371 3.3000 9 14 6.0920 -1.0617 2.4366 10 1 6.5838 -0.2922 1.2656 11 1 6.4871 -0.3652 3.6873 12 1 6.6853 -2.4229 2.4196 13 8 2.0140 -0.6846 -1.1855 14 6 2.2171 0.0639 -2.2811 15 8 1.9982 1.2518 -2.2503 16 6 2.7193 -0.5771 -3.5492 17 6 2.8610 0.4728 -4.6208 18 6 4.0558 1.1541 -4.7655 19 6 4.1889 2.1172 -5.7462 20 6 3.1208 2.4018 -6.5876 21 7 3.2519 3.3757 -7.5801 22 6 1.9203 1.7197 -6.4357 23 6 1.7957 0.7540 -5.4564 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0606 -2.2439 4.0354 30 1 2.0104 -1.3374 -3.8773 31 1 3.6883 -1.0402 -3.3631 32 1 4.8853 0.9332 -4.1101 33 1 5.1221 2.6492 -5.8583 34 1 4.0896 3.8539 -7.6828 35 1 2.5067 3.5707 -8.1697 36 1 1.0865 1.9417 -7.0854 37 1 0.8639 0.2203 -5.3405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:56 Heat of formation + Delta-G solvation = -79.863343 kcal Electronic energy + Delta-G solvation = -19160.884971 eV Core-core repulsion = 16095.341114 eV Total energy + Delta-G solvation = -3065.543857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03791 -39.09523 -36.23281 -34.84957 -33.34801 -31.68815 -30.87778 -30.85962 -27.41317 -26.58754 -23.40418 -22.83151 -21.99450 -20.53601 -19.58276 -17.19737 -17.11104 -16.98619 -16.36589 -15.73916 -15.43606 -15.01846 -14.43227 -14.18425 -13.69240 -13.37179 -13.25529 -13.03862 -12.82791 -12.42746 -11.90970 -11.73363 -11.56509 -11.45144 -11.33083 -10.91007 -10.77821 -10.71760 -10.55884 -10.30399 -9.90757 -9.72310 -9.29454 -9.00154 -8.87474 -8.37750 -7.52582 -6.00679 -4.01954 1.49773 1.56406 2.87273 3.32265 3.39599 3.43384 3.44728 3.73898 4.03235 4.46976 4.84844 4.87956 5.02281 5.31897 5.35098 5.44495 5.50304 5.65726 5.70768 5.77746 5.86096 5.90198 6.07817 6.08267 6.30536 6.37316 6.43699 6.62693 6.75635 6.79476 6.86915 7.26074 7.39038 7.54469 7.59980 7.73069 7.96126 8.35795 8.53688 9.01646 9.61212 11.10808 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.004395 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.733239 B = 6369.620269 C = 7184.855989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.023 3.977 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 O -0.337 6.337 14 C 0.455 3.545 15 O -0.515 6.515 16 C -0.070 4.070 17 C -0.125 4.125 18 C -0.053 4.053 19 C -0.197 4.197 20 C 0.212 3.788 21 N -0.882 5.882 22 C -0.199 4.199 23 C -0.055 4.055 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.117 0.883 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 5.413 -19.913 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.014 4.014 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 O -0.253 6.253 14 C 0.298 3.702 15 O -0.404 6.404 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.072 4.072 19 C -0.219 4.219 20 C 0.108 3.892 21 N -0.421 5.421 22 C -0.221 4.221 23 C -0.074 4.074 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.224 0.776 35 H 0.223 0.777 36 H 0.135 0.865 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.448 5.634 -19.652 20.590 hybrid contribution 1.016 0.456 -0.020 1.114 sum -1.432 6.090 -19.672 20.643 Atomic orbital electron populations 1.22223 0.96455 1.02064 1.01591 1.23132 0.91911 0.97642 0.83459 0.90896 1.19313 0.96574 0.96484 0.88993 1.21160 0.91757 1.34281 1.07961 0.92717 1.24982 0.98481 0.95261 0.95642 1.69960 1.35456 1.36051 1.12109 0.86525 0.85735 0.77780 0.77939 1.19757 1.21015 1.20928 1.86591 1.76009 1.42386 1.20312 1.23499 0.74759 0.86120 0.85861 1.90606 1.48415 1.16808 1.84585 1.20198 1.04423 0.97317 0.88831 1.19087 0.94833 1.00560 0.98204 1.20792 0.96975 0.93677 0.95712 1.20504 0.98417 1.03319 0.99682 1.17778 0.93822 0.88824 0.88779 1.42440 1.18317 1.43642 1.37727 1.20471 0.96704 1.01573 1.03365 1.20713 0.97404 0.95782 0.93477 0.92154 0.91246 0.93481 0.94309 0.95231 0.92995 0.87543 0.87175 0.85979 0.86373 0.77620 0.77670 0.86455 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.55 37.16 0.35 -2.71 16 2 C 0.09 2.07 2.50 -26.73 -0.07 2.00 16 3 H 0.07 1.72 7.15 -51.94 -0.37 1.35 16 4 C 0.02 0.60 4.69 -27.88 -0.13 0.47 16 5 C -0.51 -14.73 8.89 -34.44 -0.31 -15.03 16 6 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 O -0.34 -7.25 9.64 -39.25 -0.38 -7.63 16 14 C 0.45 8.67 7.92 36.01 0.29 8.96 16 15 O -0.51 -11.05 15.25 -18.75 -0.29 -11.33 16 16 C -0.07 -0.99 5.94 -29.04 -0.17 -1.16 16 17 C -0.12 -1.74 4.38 -104.59 -0.46 -2.20 16 18 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16 19 C -0.20 -2.38 9.90 -39.38 -0.39 -2.77 16 20 C 0.21 2.39 6.75 -83.79 -0.57 1.82 16 21 N -0.88 -6.86 9.09 32.41 0.29 -6.57 16 22 C -0.20 -2.30 9.90 -39.38 -0.39 -2.69 16 23 C -0.06 -0.70 9.69 -39.62 -0.38 -1.08 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.11 1.22 8.08 -51.92 -0.42 0.80 16 31 H 0.11 1.42 8.09 -51.93 -0.42 1.00 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.40 2.41 8.84 -40.82 -0.36 2.05 16 35 H 0.40 2.33 8.84 -40.82 -0.36 1.97 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -33.56 323.38 -7.76 -41.32 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.28 Total: 2.49 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.70 Total: -13.94 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 1.03 Total: -32.66 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.66 Total: -18.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.56 -7.76 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.542 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds