Wall clock time and date at job start Mon Mar 30 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08989 * 109.47651 * 2 1 4 4 C 1.53001 * 109.46972 * 120.00243 * 2 1 3 5 5 C 1.50703 * 109.47128 * 184.99808 * 4 2 1 6 6 H 1.08000 * 120.00221 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00015 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99958 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47166 * 120.00077 * 9 7 5 12 12 H 1.48493 * 109.47236 * 240.00247 * 9 7 5 13 13 O 1.45203 * 109.46994 * 239.99539 * 2 1 3 14 14 C 1.34227 * 116.99550 * 90.00282 * 13 2 1 15 15 O 1.20826 * 119.99982 * 0.02562 * 14 13 2 16 16 C 1.50701 * 120.00312 * 179.97438 * 14 13 2 17 17 C 1.50689 * 109.47698 * 179.97438 * 16 14 13 18 18 C 1.38293 * 119.92619 * 90.00181 * 17 16 14 19 19 C 1.38103 * 120.07544 * 180.02562 * 18 17 16 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46938 * 300.00467 * 1 2 3 26 26 H 1.09003 * 109.47129 * 60.00133 * 1 2 3 27 27 H 1.08999 * 109.47052 * 304.99446 * 4 2 1 28 28 H 1.08998 * 109.47204 * 64.99696 * 4 2 1 29 29 H 0.96996 * 119.99752 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46897 * 59.99591 * 16 14 13 31 31 H 1.09003 * 109.46911 * 300.00907 * 16 14 13 32 32 H 1.08001 * 119.95790 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.03416 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 36 36 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 37 37 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3584 8 7 3.5763 -1.8371 3.3000 9 14 6.0920 -1.0617 2.4366 10 1 6.5838 -0.2922 1.2656 11 1 6.4871 -0.3652 3.6873 12 1 6.6853 -2.4229 2.4196 13 8 2.0140 -0.6846 -1.1855 14 6 2.2171 0.0639 -2.2811 15 8 1.9982 1.2518 -2.2503 16 6 2.7193 -0.5771 -3.5492 17 6 2.8610 0.4728 -4.6208 18 6 4.0558 1.1541 -4.7655 19 6 4.1889 2.1172 -5.7462 20 6 3.1208 2.4018 -6.5876 21 7 3.2519 3.3757 -7.5801 22 6 1.9203 1.7197 -6.4357 23 6 1.7957 0.7540 -5.4564 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0606 -2.2439 4.0354 30 1 2.0104 -1.3374 -3.8773 31 1 3.6883 -1.0402 -3.3631 32 1 4.8853 0.9332 -4.1101 33 1 5.1221 2.6492 -5.8583 34 1 4.0896 3.8539 -7.6828 35 1 2.5067 3.5707 -8.1697 36 1 1.0865 1.9417 -7.0854 37 1 0.8639 0.2203 -5.3405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:55 Heat of formation + Delta-G solvation = -100.119274 kcal Electronic energy + Delta-G solvation = -19161.763334 eV Core-core repulsion = 16095.341114 eV Total energy + Delta-G solvation = -3066.422220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47944 -40.14476 -37.81970 -35.78742 -35.39038 -33.48384 -31.99226 -31.76229 -29.38056 -27.61574 -25.35658 -23.73667 -23.37306 -21.87363 -21.17291 -18.72859 -18.51127 -18.01563 -17.78720 -17.22806 -16.85638 -16.44706 -16.10444 -15.20282 -14.86766 -14.70393 -14.44093 -14.24484 -14.09226 -13.98073 -13.77612 -13.34325 -13.20612 -12.89773 -12.67988 -12.57474 -12.42039 -12.25729 -11.80558 -11.68921 -11.55777 -11.40133 -11.18974 -10.92717 -10.58944 -9.80050 -8.35057 -8.21763 -6.31367 0.57595 0.60077 1.37747 1.39124 1.39307 1.52533 2.02857 2.40299 3.01246 3.06312 3.12529 3.79531 3.95642 4.04212 4.09997 4.17712 4.26613 4.35885 4.43454 4.54101 4.66477 4.81277 4.81629 4.97686 4.98828 5.12631 5.17899 5.36439 5.41968 5.42304 5.51660 5.73892 5.80145 5.85297 6.01255 6.18156 6.62699 6.78963 6.96836 7.03842 7.36235 8.90125 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.004395 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.733239 B = 6369.620269 C = 7184.855989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 H 0.054 0.946 4 C 0.029 3.971 5 C -0.535 4.535 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.273 1.273 13 O -0.351 6.351 14 C 0.452 3.548 15 O -0.542 6.542 16 C -0.061 4.061 17 C -0.149 4.149 18 C -0.071 4.071 19 C -0.210 4.210 20 C 0.212 3.788 21 N -0.868 5.868 22 C -0.207 4.207 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.010 0.990 29 H 0.266 0.734 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.406 0.594 35 H 0.407 0.593 36 H 0.140 0.860 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 5.836 -21.669 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.573 4.573 6 H 0.065 0.935 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.198 1.198 13 O -0.268 6.268 14 C 0.296 3.704 15 O -0.433 6.433 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.090 4.090 19 C -0.233 4.233 20 C 0.106 3.894 21 N -0.408 5.408 22 C -0.230 4.230 23 C -0.082 4.082 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.235 0.765 35 H 0.237 0.763 36 H 0.158 0.842 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.074 6.078 -21.445 22.386 hybrid contribution 0.890 0.388 0.451 1.071 sum -1.184 6.466 -20.994 21.999 Atomic orbital electron populations 1.22127 0.93307 1.03069 1.02771 1.22829 0.94307 0.95781 0.82839 0.92751 1.19142 0.95579 0.95478 0.90596 1.21442 0.93201 1.34570 1.08082 0.93527 1.25846 1.03571 0.94669 0.95109 1.70062 1.37512 1.36587 1.12665 0.85460 0.79585 0.78225 0.78178 1.19330 1.20128 1.19836 1.86578 1.76511 1.42971 1.20729 1.24506 0.73726 0.85926 0.86205 1.90581 1.49662 1.18067 1.84943 1.20318 1.05358 0.97853 0.86277 1.19151 0.95606 1.01479 0.98877 1.20957 0.97127 0.94452 0.96439 1.20724 0.99531 1.03316 0.99700 1.17930 0.93486 0.89011 0.88952 1.42424 1.19311 1.42405 1.36676 1.20778 0.97570 1.01202 1.03449 1.20965 0.97583 0.96149 0.93478 0.91218 0.90087 0.92238 0.95798 0.97200 0.92548 0.84690 0.86124 0.86223 0.84850 0.76490 0.76340 0.84208 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 9.55 71.98 0.69 -4.96 16 2 C 0.10 4.40 2.50 30.59 0.08 4.48 16 3 H 0.05 2.64 7.15 -2.39 -0.02 2.63 16 4 C 0.03 1.55 4.69 29.85 0.14 1.69 16 5 C -0.53 -31.30 8.89 25.60 0.23 -31.07 16 6 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 O -0.35 -15.22 9.64 -51.39 -0.50 -15.72 16 14 C 0.45 17.17 7.92 71.24 0.56 17.73 16 15 O -0.54 -23.38 15.25 21.96 0.33 -23.04 16 16 C -0.06 -1.67 5.94 29.10 0.17 -1.49 16 17 C -0.15 -4.02 4.38 -19.84 -0.09 -4.11 16 18 C -0.07 -1.89 9.69 22.25 0.22 -1.68 16 19 C -0.21 -4.84 9.90 22.40 0.22 -4.62 16 20 C 0.21 4.37 6.75 38.22 0.26 4.63 16 21 N -0.87 -11.27 9.09 -51.37 -0.47 -11.74 16 22 C -0.21 -4.37 9.90 22.40 0.22 -4.15 16 23 C -0.06 -1.51 9.69 22.25 0.22 -1.29 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.14 2.86 8.08 -2.38 -0.02 2.84 16 31 H 0.12 3.02 8.09 -2.39 -0.02 3.00 16 32 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.41 3.89 8.84 -92.71 -0.82 3.07 16 35 H 0.41 3.61 8.84 -92.70 -0.82 2.79 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -72.24 323.38 4.50 -67.74 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.56 Total: 15.58 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 3.38 Total: -24.02 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.18 Total: -67.55 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.16 Total: -38.76 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.24 4.50 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.379 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds